Wall clock time and date at job start Wed Apr 1 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47161 * 2 1 4 4 C 1.35399 * 126.44069 * 265.00365 * 3 2 1 5 5 C 1.35568 * 107.15930 * 180.02562 * 4 3 2 6 6 N 1.33103 * 108.35153 * 359.77202 * 5 4 3 7 7 C 1.31614 * 109.09265 * 0.37288 * 6 5 4 8 8 C 1.47408 * 125.86477 * 179.89254 * 7 6 5 9 9 O 1.21605 * 120.00083 * 179.69764 * 8 7 6 10 10 N 1.34779 * 119.99865 * 359.69221 * 8 7 6 11 11 C 1.46501 * 119.99975 * 180.02562 * 10 8 7 12 12 H 1.08995 * 113.22476 * 22.19877 * 11 10 8 13 13 C 1.49993 * 114.12520 * 249.14151 * 11 10 8 14 14 H 1.09000 * 112.50907 * 170.16550 * 13 11 10 15 15 C 1.51200 * 126.17493 * 27.77055 * 13 11 10 16 16 C 1.54097 * 106.20188 * 198.56850 * 15 13 11 17 17 C 1.52501 * 112.66450 * 55.43608 * 16 15 13 18 18 N 1.48411 * 111.87359 * 313.21825 * 17 16 15 19 19 C 1.36934 * 123.16139 * 231.83637 * 18 17 16 20 20 H 1.08003 * 119.99449 * 208.55291 * 19 18 17 21 21 C 1.38814 * 120.00292 * 28.56396 * 19 18 17 22 22 N 1.31618 * 119.99927 * 17.62789 * 21 19 18 23 23 Si 1.86801 * 119.99994 * 197.63291 * 21 19 18 24 24 H 1.48497 * 109.46984 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47251 * 119.99533 * 23 21 19 26 26 H 1.48506 * 109.46746 * 239.99915 * 23 21 19 27 27 C 1.45382 * 113.66612 * 51.83780 * 18 17 16 28 28 H 1.08998 * 112.09382 * 58.83689 * 27 18 17 29 29 C 1.49972 * 126.66632 * 204.04838 * 27 18 17 30 30 C 1.53002 * 114.08030 * 253.26327 * 29 27 18 31 31 C 1.53001 * 114.08378 * 25.68627 * 29 27 18 32 32 H 1.09004 * 109.47363 * 59.99367 * 1 2 3 33 33 H 1.08992 * 109.47182 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46887 * 300.00100 * 1 2 3 35 35 H 1.09003 * 109.46914 * 240.00686 * 2 1 3 36 36 H 1.08993 * 109.47132 * 119.99893 * 2 1 3 37 37 H 1.07996 * 126.42065 * 359.97438 * 4 3 2 38 38 H 1.08000 * 125.82554 * 180.02562 * 5 4 3 39 39 H 0.97001 * 119.99576 * 359.97438 * 10 8 7 40 40 H 1.09006 * 110.10347 * 79.39848 * 15 13 11 41 41 H 1.09002 * 110.10240 * 317.73958 * 15 13 11 42 42 H 1.08995 * 108.83944 * 294.62332 * 16 15 13 43 43 H 1.08993 * 108.84904 * 176.26159 * 16 15 13 44 44 H 1.09008 * 108.99968 * 73.82926 * 17 16 15 45 45 H 1.08994 * 109.00126 * 192.59850 * 17 16 15 46 46 H 0.96996 * 120.00154 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47390 * 60.00740 * 30 29 27 48 48 H 1.09002 * 109.46535 * 180.02562 * 30 29 27 49 49 H 1.08992 * 109.47466 * 300.00110 * 30 29 27 50 50 H 1.08995 * 109.46973 * 65.11191 * 31 29 27 51 51 H 1.08999 * 109.46749 * 185.11080 * 31 29 27 52 52 H 1.08996 * 109.47188 * 305.10830 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3759 2.1079 -1.0851 5 6 2.7662 3.3271 -0.6391 6 7 2.6453 3.3470 0.6863 7 6 2.1991 2.1783 1.0954 8 6 1.9338 1.7968 2.4943 9 8 1.5155 0.6844 2.7523 10 7 2.1549 2.6807 3.4874 11 6 1.8917 2.3013 4.8778 12 1 1.8981 1.2232 5.0377 13 6 0.7232 3.0100 5.4960 14 1 0.4444 2.5903 6.4626 15 6 -0.4822 3.5520 4.7616 16 6 -1.1408 4.5722 5.7104 17 6 -0.1739 5.6596 6.1668 18 7 1.1252 5.0943 6.6089 19 6 1.6989 5.3906 7.8165 20 1 2.7731 5.3630 7.9252 21 6 0.8998 5.7261 8.9009 22 7 -0.3831 5.4325 8.8887 23 14 1.6454 6.5943 10.3773 24 1 3.0963 6.8087 10.1447 25 1 0.9756 7.9053 10.5709 26 1 1.4572 5.7582 11.5902 27 6 1.7313 4.1966 5.6392 28 1 1.9115 4.6873 4.6828 29 6 2.7193 3.1050 5.9246 30 6 4.1480 3.4241 5.4795 31 6 2.6388 2.5461 7.3466 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5137 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 2.3549 1.7778 -2.1132 38 1 3.1120 4.1445 -1.2546 39 1 2.4889 3.5678 3.2816 40 1 -1.1791 2.7443 4.5380 41 1 -0.1696 4.0444 3.8407 42 1 -1.5173 4.0454 6.5871 43 1 -1.9800 5.0405 5.1962 44 1 0.0017 6.3482 5.3402 45 1 -0.6223 6.2085 6.9948 46 1 -0.9416 5.6673 9.6463 47 1 4.4987 4.3174 5.9963 48 1 4.7998 2.5846 5.7212 49 1 4.1631 3.5973 4.4035 50 1 1.6777 2.0521 7.4889 51 1 3.4433 1.8269 7.5004 52 1 2.7381 3.3611 8.0635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087284607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:27 Heat of formation + Delta-G solvation = 99.489769 kcal Electronic energy + Delta-G solvation = -32689.765869 eV Core-core repulsion = 28692.951951 eV Total energy + Delta-G solvation = -3996.813918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.42239 -41.04013 -38.56453 -35.46689 -35.06042 -33.21414 -32.76370 -30.62382 -30.24754 -29.72482 -29.12953 -26.88856 -25.81837 -24.96483 -24.13995 -22.92540 -22.30207 -21.56413 -20.47139 -20.04183 -18.99256 -18.22216 -17.66358 -16.67985 -16.39683 -15.87880 -15.45365 -14.84151 -14.70713 -14.49535 -14.15415 -14.03263 -13.92021 -13.72441 -13.65132 -13.60475 -13.21725 -12.85347 -12.65035 -12.49973 -12.36976 -12.31602 -11.91477 -11.61565 -11.49112 -11.21621 -11.11513 -10.95627 -10.83224 -10.63320 -10.40882 -10.35342 -10.20133 -10.17989 -10.02045 -9.96152 -9.81408 -9.46349 -9.17735 -8.88825 -8.79127 -8.51895 -8.35522 -6.51191 -5.73955 -3.15275 1.29541 2.30169 2.52181 3.30173 3.38385 3.42529 3.47640 3.48498 4.29771 4.40002 4.50951 4.61168 4.73382 4.82337 4.99046 5.05574 5.10339 5.23596 5.27672 5.35440 5.38450 5.48664 5.51178 5.68370 5.84320 5.91557 5.95315 5.97500 6.04196 6.08054 6.16847 6.21901 6.38401 6.40927 6.43976 6.45741 6.57221 6.60015 6.69711 6.73335 6.75422 6.78438 6.87256 7.01700 7.13271 7.15356 7.30216 7.50722 7.52990 7.74171 7.80901 7.81778 8.24539 8.47838 9.19086 9.86108 10.52696 11.32782 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.003067 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.197579 B = 9128.058776 C = 9358.621851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.414 5.414 4 C -0.035 4.035 5 C -0.028 4.028 6 N -0.445 5.445 7 C 0.146 3.854 8 C 0.607 3.393 9 O -0.544 6.544 10 N -0.673 5.673 11 C 0.135 3.865 12 H 0.098 0.902 13 C -0.168 4.168 14 H 0.106 0.894 15 C -0.085 4.085 16 C -0.121 4.121 17 C 0.156 3.844 18 N -0.570 5.570 19 C -0.233 4.233 20 H 0.068 0.932 21 C 0.001 3.999 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.145 3.855 28 H 0.047 0.953 29 C -0.062 4.062 30 C -0.135 4.135 31 C -0.123 4.123 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.412 0.588 40 H 0.038 0.962 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.039 0.961 44 H -0.005 1.005 45 H 0.099 0.901 46 H 0.251 0.749 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.049 0.951 50 H 0.058 0.942 51 H 0.037 0.963 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -9.191 -18.437 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.095 5.095 4 C -0.173 4.173 5 C -0.182 4.182 6 N -0.167 5.167 7 C -0.114 4.114 8 C 0.391 3.609 9 O -0.421 6.421 10 N -0.324 5.324 11 C 0.030 3.970 12 H 0.116 0.884 13 C -0.189 4.189 14 H 0.124 0.876 15 C -0.123 4.123 16 C -0.160 4.160 17 C 0.031 3.969 18 N -0.291 5.291 19 C -0.362 4.362 20 H 0.085 0.915 21 C -0.198 4.198 22 N -0.540 5.540 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.037 3.963 28 H 0.065 0.935 29 C -0.063 4.063 30 C -0.193 4.193 31 C -0.180 4.180 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.198 0.802 38 H 0.194 0.806 39 H 0.250 0.750 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.013 0.987 45 H 0.117 0.883 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.056 0.944 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.909 -9.434 -17.465 20.231 hybrid contribution 0.128 0.279 -0.127 0.332 sum 4.037 -9.155 -17.592 20.238 Atomic orbital electron populations 1.22067 0.93488 1.03394 1.03151 1.22120 0.96418 0.78791 1.05220 1.45285 1.45143 1.12916 1.06117 1.22885 1.07173 0.94194 0.93028 1.22424 1.07233 0.97429 0.91081 1.70236 1.15294 1.18509 1.12631 1.22751 1.09906 0.88350 0.90390 1.16403 0.78028 0.84619 0.81871 1.90776 1.46955 1.20861 1.83485 1.45390 1.64752 1.16710 1.05509 1.21699 0.97485 0.99023 0.78776 0.88397 1.23326 0.95074 1.00221 1.00304 0.87564 1.21052 0.96357 0.97415 0.97493 1.21800 0.97946 0.97986 0.98296 1.20916 0.85667 0.92903 0.97433 1.43830 1.19915 1.50663 1.14705 1.18990 0.90748 1.40546 0.85959 0.91483 1.24949 0.96049 1.01732 0.97040 1.69954 1.04957 1.48520 1.30562 0.86339 0.78669 0.79477 0.83020 1.20349 1.21774 1.21913 1.21788 0.93184 0.88569 0.92758 0.93535 1.21863 0.93383 0.95743 0.95316 1.21707 0.95728 1.01415 1.00411 1.21696 1.00484 1.01487 0.94315 0.92367 0.90367 0.91093 0.89156 0.87148 0.80224 0.80631 0.75020 0.94278 0.93611 0.91549 0.94262 0.98708 0.88333 0.93876 0.92021 0.93143 0.93158 0.92283 0.94356 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.23 37.16 0.38 -1.04 16 2 C 0.10 0.85 6.18 -4.04 -0.02 0.83 16 3 N -0.41 -4.62 2.76 -114.58 -0.32 -4.94 16 4 C -0.03 -0.31 11.53 -16.93 -0.20 -0.51 16 5 C -0.03 -0.31 11.85 -17.95 -0.21 -0.52 16 6 N -0.45 -6.26 10.89 -11.25 -0.12 -6.38 16 7 C 0.15 2.06 7.79 -154.52 -1.20 0.86 16 8 C 0.61 9.52 7.81 -12.53 -0.10 9.42 16 9 O -0.54 -9.23 14.10 5.27 0.07 -9.15 16 10 N -0.67 -10.52 4.18 -58.75 -0.25 -10.77 16 11 C 0.14 2.28 3.97 -71.84 -0.28 2.00 16 12 H 0.10 1.69 7.45 -51.93 -0.39 1.31 16 13 C -0.17 -3.21 2.96 -95.83 -0.28 -3.50 16 14 H 0.11 2.29 5.99 -51.93 -0.31 1.98 16 15 C -0.09 -1.63 5.94 -27.07 -0.16 -1.79 16 16 C -0.12 -2.54 5.90 -26.41 -0.16 -2.70 16 17 C 0.16 3.65 5.76 -3.24 -0.02 3.63 16 18 N -0.57 -13.49 2.91 -169.41 -0.49 -13.98 16 19 C -0.23 -5.97 7.56 -15.06 -0.11 -6.09 16 20 H 0.07 1.72 7.31 -52.48 -0.38 1.33 16 21 C 0.00 0.02 5.07 -17.43 -0.09 -0.07 16 22 N -0.90 -24.65 11.14 55.49 0.62 -24.03 16 23 Si 0.89 21.11 29.59 -169.99 -5.03 16.08 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 C 0.15 2.90 2.96 -72.13 -0.21 2.68 16 28 H 0.05 0.94 6.44 -51.93 -0.33 0.60 16 29 C -0.06 -1.08 1.39 -159.14 -0.22 -1.30 16 30 C -0.14 -2.09 9.22 37.16 0.34 -1.75 16 31 C -0.12 -2.24 8.67 37.16 0.32 -1.92 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 35 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 36 H 0.11 1.15 6.64 -51.93 -0.34 0.81 16 37 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.41 6.38 6.02 -40.82 -0.25 6.13 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.00 -0.11 8.14 -51.92 -0.42 -0.54 16 45 H 0.10 2.59 5.64 -51.93 -0.29 2.30 16 46 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 49 H 0.05 0.73 6.46 -51.93 -0.34 0.39 16 50 H 0.06 1.13 6.11 -51.93 -0.32 0.81 16 51 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 52 H 0.09 1.97 5.47 -51.93 -0.28 1.69 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -29.59 396.70 -10.02 -39.61 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -8.26 Total: 9.34 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.23 Total: -1.76 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.56 Total: -60.10 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.59 -10.02 -39.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.102 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds