Wall clock time and date at job start Wed Apr 1 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47161 * 2 1 4 4 C 1.35399 * 126.44069 * 265.00365 * 3 2 1 5 5 C 1.35568 * 107.15930 * 180.02562 * 4 3 2 6 6 N 1.33103 * 108.35153 * 359.77202 * 5 4 3 7 7 C 1.31614 * 109.09265 * 0.37288 * 6 5 4 8 8 C 1.47408 * 125.86477 * 179.89254 * 7 6 5 9 9 O 1.21605 * 120.00083 * 179.69764 * 8 7 6 10 10 N 1.34779 * 119.99865 * 359.69221 * 8 7 6 11 11 C 1.46501 * 119.99975 * 180.02562 * 10 8 7 12 12 H 1.08995 * 113.22476 * 22.19877 * 11 10 8 13 13 C 1.49993 * 114.12520 * 249.14151 * 11 10 8 14 14 H 1.09000 * 112.50907 * 170.16550 * 13 11 10 15 15 C 1.51200 * 126.17493 * 27.77055 * 13 11 10 16 16 C 1.54097 * 106.20188 * 198.56850 * 15 13 11 17 17 C 1.52501 * 112.66450 * 55.43608 * 16 15 13 18 18 N 1.48411 * 111.87359 * 313.21825 * 17 16 15 19 19 C 1.36934 * 123.16139 * 231.83637 * 18 17 16 20 20 H 1.08003 * 119.99449 * 208.55291 * 19 18 17 21 21 C 1.38814 * 120.00292 * 28.56396 * 19 18 17 22 22 N 1.31618 * 119.99927 * 17.62789 * 21 19 18 23 23 Si 1.86801 * 119.99994 * 197.63291 * 21 19 18 24 24 H 1.48497 * 109.46984 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47251 * 119.99533 * 23 21 19 26 26 H 1.48506 * 109.46746 * 239.99915 * 23 21 19 27 27 C 1.45382 * 113.66612 * 51.83780 * 18 17 16 28 28 H 1.08998 * 112.09382 * 58.83689 * 27 18 17 29 29 C 1.49972 * 126.66632 * 204.04838 * 27 18 17 30 30 C 1.53002 * 114.08030 * 253.26327 * 29 27 18 31 31 C 1.53001 * 114.08378 * 25.68627 * 29 27 18 32 32 H 1.09004 * 109.47363 * 59.99367 * 1 2 3 33 33 H 1.08992 * 109.47182 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46887 * 300.00100 * 1 2 3 35 35 H 1.09003 * 109.46914 * 240.00686 * 2 1 3 36 36 H 1.08993 * 109.47132 * 119.99893 * 2 1 3 37 37 H 1.07996 * 126.42065 * 359.97438 * 4 3 2 38 38 H 1.08000 * 125.82554 * 180.02562 * 5 4 3 39 39 H 0.97001 * 119.99576 * 359.97438 * 10 8 7 40 40 H 1.09006 * 110.10347 * 79.39848 * 15 13 11 41 41 H 1.09002 * 110.10240 * 317.73958 * 15 13 11 42 42 H 1.08995 * 108.83944 * 294.62332 * 16 15 13 43 43 H 1.08993 * 108.84904 * 176.26159 * 16 15 13 44 44 H 1.09008 * 108.99968 * 73.82926 * 17 16 15 45 45 H 1.08994 * 109.00126 * 192.59850 * 17 16 15 46 46 H 0.96996 * 120.00154 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47390 * 60.00740 * 30 29 27 48 48 H 1.09002 * 109.46535 * 180.02562 * 30 29 27 49 49 H 1.08992 * 109.47466 * 300.00110 * 30 29 27 50 50 H 1.08995 * 109.46973 * 65.11191 * 31 29 27 51 51 H 1.08999 * 109.46749 * 185.11080 * 31 29 27 52 52 H 1.08996 * 109.47188 * 305.10830 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3759 2.1079 -1.0851 5 6 2.7662 3.3271 -0.6391 6 7 2.6453 3.3470 0.6863 7 6 2.1991 2.1783 1.0954 8 6 1.9338 1.7968 2.4943 9 8 1.5155 0.6844 2.7523 10 7 2.1549 2.6807 3.4874 11 6 1.8917 2.3013 4.8778 12 1 1.8981 1.2232 5.0377 13 6 0.7232 3.0100 5.4960 14 1 0.4444 2.5903 6.4626 15 6 -0.4822 3.5520 4.7616 16 6 -1.1408 4.5722 5.7104 17 6 -0.1739 5.6596 6.1668 18 7 1.1252 5.0943 6.6089 19 6 1.6989 5.3906 7.8165 20 1 2.7731 5.3630 7.9252 21 6 0.8998 5.7261 8.9009 22 7 -0.3831 5.4325 8.8887 23 14 1.6454 6.5943 10.3773 24 1 3.0963 6.8087 10.1447 25 1 0.9756 7.9053 10.5709 26 1 1.4572 5.7582 11.5902 27 6 1.7313 4.1966 5.6392 28 1 1.9115 4.6873 4.6828 29 6 2.7193 3.1050 5.9246 30 6 4.1480 3.4241 5.4795 31 6 2.6388 2.5461 7.3466 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5137 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 2.3549 1.7778 -2.1132 38 1 3.1120 4.1445 -1.2546 39 1 2.4889 3.5678 3.2816 40 1 -1.1791 2.7443 4.5380 41 1 -0.1696 4.0444 3.8407 42 1 -1.5173 4.0454 6.5871 43 1 -1.9800 5.0405 5.1962 44 1 0.0017 6.3482 5.3402 45 1 -0.6223 6.2085 6.9948 46 1 -0.9416 5.6673 9.6463 47 1 4.4987 4.3174 5.9963 48 1 4.7998 2.5846 5.7212 49 1 4.1631 3.5973 4.4035 50 1 1.6777 2.0521 7.4889 51 1 3.4433 1.8269 7.5004 52 1 2.7381 3.3611 8.0635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087284607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:25 Heat of formation + Delta-G solvation = 83.676687 kcal Electronic energy + Delta-G solvation = -32690.451575 eV Core-core repulsion = 28692.951951 eV Total energy + Delta-G solvation = -3997.499624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.29205 -42.51188 -39.82905 -36.97005 -36.06929 -34.72930 -34.35216 -32.15157 -31.36690 -30.87227 -30.39739 -28.34826 -27.53858 -26.49783 -25.07422 -24.08495 -23.87397 -22.45531 -22.09960 -21.17987 -20.52904 -19.65656 -18.71382 -18.50149 -17.44620 -16.99158 -16.67540 -16.45521 -15.83200 -15.65645 -15.59090 -15.41559 -15.31947 -15.09046 -14.76249 -14.69191 -14.46770 -14.24669 -14.12405 -13.95202 -13.58141 -13.49792 -13.17798 -12.99185 -12.93771 -12.76142 -12.67179 -12.54795 -12.32315 -12.27130 -12.07536 -12.03732 -11.73418 -11.49153 -11.36114 -11.23527 -11.12346 -10.82367 -10.81567 -10.63679 -10.23815 -10.03144 -9.47294 -8.43962 -7.75752 -5.17581 0.34865 1.42240 1.47519 1.51911 1.59506 1.65423 2.24432 2.38914 2.56667 3.26741 3.29638 3.40422 3.49289 3.74314 3.76596 3.86952 3.93177 4.06655 4.15159 4.28704 4.36117 4.39544 4.42584 4.49660 4.50751 4.56345 4.64147 4.72107 4.75772 4.77098 4.81352 4.89983 4.97972 5.06456 5.10434 5.13814 5.17464 5.17935 5.23087 5.27804 5.31274 5.40778 5.52876 5.59975 5.65214 5.68376 5.71522 5.78776 5.88096 5.95775 6.34947 6.49800 6.85028 7.08574 7.19044 7.91230 8.56531 9.29699 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.003067 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.197579 B = 9128.058776 C = 9358.621851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.093 3.907 3 N -0.412 5.412 4 C -0.006 4.006 5 C -0.049 4.049 6 N -0.468 5.468 7 C 0.104 3.896 8 C 0.607 3.393 9 O -0.563 6.563 10 N -0.672 5.672 11 C 0.156 3.844 12 H 0.097 0.903 13 C -0.162 4.162 14 H 0.079 0.921 15 C -0.076 4.076 16 C -0.111 4.111 17 C 0.156 3.844 18 N -0.583 5.583 19 C -0.226 4.226 20 H 0.067 0.933 21 C -0.048 4.048 22 N -0.922 5.922 23 Si 0.950 3.050 24 H -0.269 1.269 25 H -0.298 1.298 26 H -0.297 1.297 27 C 0.137 3.863 28 H 0.052 0.948 29 C -0.058 4.058 30 C -0.128 4.128 31 C -0.117 4.117 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.033 0.967 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.229 0.771 38 H 0.201 0.799 39 H 0.413 0.587 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.001 0.999 45 H 0.068 0.932 46 H 0.244 0.756 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.043 0.957 51 H 0.066 0.934 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.732 -10.226 -21.756 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.093 5.093 4 C -0.145 4.145 5 C -0.202 4.202 6 N -0.191 5.191 7 C -0.153 4.153 8 C 0.393 3.607 9 O -0.442 6.442 10 N -0.322 5.322 11 C 0.050 3.950 12 H 0.115 0.885 13 C -0.184 4.184 14 H 0.097 0.903 15 C -0.113 4.113 16 C -0.150 4.150 17 C 0.031 3.969 18 N -0.305 5.305 19 C -0.356 4.356 20 H 0.085 0.915 21 C -0.243 4.243 22 N -0.569 5.569 23 Si 0.780 3.220 24 H -0.193 1.193 25 H -0.225 1.225 26 H -0.224 1.224 27 C 0.030 3.970 28 H 0.070 0.930 29 C -0.059 4.059 30 C -0.186 4.186 31 C -0.174 4.174 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.245 0.755 38 H 0.218 0.782 39 H 0.251 0.749 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.019 0.981 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.062 0.938 51 H 0.085 0.915 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.451 -10.482 -20.791 23.914 hybrid contribution -0.341 0.587 0.739 1.004 sum 5.109 -9.895 -20.052 22.937 Atomic orbital electron populations 1.22022 0.93502 1.04188 1.01821 1.22301 0.96345 0.77855 1.06295 1.45517 1.44365 1.13509 1.05874 1.23675 1.03584 0.93018 0.94211 1.23026 1.07785 0.99213 0.90214 1.70161 1.15458 1.18805 1.14628 1.22313 1.13259 0.89539 0.90207 1.16642 0.77219 0.84147 0.82689 1.90757 1.47772 1.21578 1.84049 1.45269 1.65182 1.16910 1.04876 1.21346 0.95535 0.98571 0.79531 0.88480 1.23178 0.95474 1.00174 0.99529 0.90286 1.20943 0.96352 0.97010 0.97040 1.21649 0.98018 0.97611 0.97726 1.20824 0.86096 0.93597 0.96365 1.43989 1.20172 1.51541 1.14810 1.19166 0.90753 1.39154 0.86566 0.91524 1.25533 0.96461 1.03044 0.99286 1.70099 1.05923 1.49991 1.30902 0.85456 0.78339 0.77907 0.80280 1.19330 1.22496 1.22447 1.21990 0.94677 0.88383 0.91988 0.93027 1.21827 0.94501 0.94422 0.95153 1.21649 0.94246 1.01793 1.00882 1.21580 1.00750 1.00948 0.94130 0.91127 0.88591 0.94810 0.84984 0.89153 0.75504 0.78169 0.74859 0.93549 0.92895 0.94398 0.92454 0.98143 0.91369 0.94625 0.92776 0.91280 0.92165 0.93829 0.91537 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.23 71.98 0.74 -1.68 16 2 C 0.09 1.39 6.18 86.38 0.53 1.92 16 3 N -0.41 -8.09 2.76 -516.43 -1.42 -9.51 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.88 16 5 C -0.05 -0.91 11.85 83.88 0.99 0.09 16 6 N -0.47 -12.40 10.89 -189.52 -2.06 -14.46 16 7 C 0.10 2.81 7.79 136.28 1.06 3.87 16 8 C 0.61 18.74 7.81 86.66 0.68 19.42 16 9 O -0.56 -19.04 14.10 -4.05 -0.06 -19.10 16 10 N -0.67 -20.61 4.18 -458.05 -1.91 -22.52 16 11 C 0.16 5.23 3.97 42.46 0.17 5.39 16 12 H 0.10 3.33 7.45 -2.39 -0.02 3.31 16 13 C -0.16 -6.30 2.96 -14.17 -0.04 -6.34 16 14 H 0.08 3.55 5.99 -2.39 -0.01 3.54 16 15 C -0.08 -2.91 5.94 30.38 0.18 -2.73 16 16 C -0.11 -4.77 5.90 30.80 0.18 -4.59 16 17 C 0.16 7.52 5.76 85.85 0.49 8.02 16 18 N -0.58 -28.27 2.91 -689.88 -2.01 -30.28 16 19 C -0.23 -11.85 7.56 84.03 0.64 -11.21 16 20 H 0.07 3.45 7.31 -2.91 -0.02 3.43 16 21 C -0.05 -2.59 5.07 84.86 0.43 -2.16 16 22 N -0.92 -52.83 11.14 21.65 0.24 -52.59 16 23 Si 0.95 44.48 29.59 68.60 2.03 46.51 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 C 0.14 5.50 2.96 42.87 0.13 5.62 16 28 H 0.05 2.06 6.44 -2.39 -0.02 2.04 16 29 C -0.06 -1.99 1.39 -55.18 -0.08 -2.07 16 30 C -0.13 -3.77 9.22 71.98 0.66 -3.11 16 31 C -0.12 -4.28 8.67 71.98 0.62 -3.66 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.77 7.85 -2.38 -0.02 0.75 16 35 H 0.13 0.88 8.13 -2.39 -0.02 0.86 16 36 H 0.09 1.76 6.64 -2.39 -0.02 1.75 16 37 H 0.23 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.41 12.50 6.02 -92.71 -0.56 11.94 16 40 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.05 1.96 7.95 -2.39 -0.02 1.94 16 42 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 45 H 0.07 3.74 5.64 -2.39 -0.01 3.73 16 46 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 49 H 0.06 1.65 6.46 -2.39 -0.02 1.63 16 50 H 0.04 1.71 6.11 -2.39 -0.01 1.69 16 51 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 52 H 0.07 2.82 5.47 -2.39 -0.01 2.81 16 Total: -1.00 -67.21 396.70 3.53 -63.68 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.37 Total: 30.60 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 8.35 Total: 7.67 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -7.17 Total: -129.36 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.21 3.53 -63.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.354 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds