Wall clock time and date at job start Wed Apr 1 2020 05:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47417 * 2 1 4 4 C 1.35032 * 124.88592 * 124.99838 * 3 2 1 5 5 C 1.35363 * 107.22781 * 180.02562 * 4 3 2 6 6 C 1.41495 * 105.50426 * 359.97438 * 5 4 3 7 7 C 1.47718 * 126.51835 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99880 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99714 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99704 * 179.97438 * 9 7 6 11 11 H 1.08999 * 113.22762 * 22.19483 * 10 9 7 12 12 C 1.50006 * 114.29251 * 249.22254 * 10 9 7 13 13 H 1.08997 * 112.50459 * 170.15073 * 12 10 9 14 14 C 1.50981 * 126.18444 * 27.70101 * 12 10 9 15 15 C 1.54089 * 106.30422 * 198.55262 * 14 12 10 16 16 C 1.52496 * 112.59013 * 55.47146 * 15 14 12 17 17 N 1.48403 * 111.87335 * 313.26422 * 16 15 14 18 18 C 1.36936 * 123.16440 * 231.84521 * 17 16 15 19 19 H 1.08004 * 119.99489 * 208.86959 * 18 17 16 20 20 C 1.38804 * 120.00530 * 28.86359 * 18 17 16 21 21 N 1.31626 * 119.99991 * 18.36006 * 20 18 17 22 22 Si 1.86799 * 120.00237 * 198.36669 * 20 18 17 23 23 H 1.48499 * 109.47390 * 59.99865 * 22 20 18 24 24 H 1.48502 * 109.47270 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47173 * 299.99760 * 22 20 18 26 26 C 1.45377 * 113.66682 * 51.83684 * 17 16 15 27 27 H 1.08999 * 112.09478 * 58.83433 * 26 17 16 28 28 C 1.49973 * 126.67282 * 204.05035 * 26 17 16 29 29 C 1.52994 * 114.08395 * 253.26699 * 28 26 17 30 30 C 1.53006 * 114.07966 * 25.51464 * 28 26 17 31 31 N 1.28467 * 124.88274 * 305.33451 * 3 2 1 32 32 H 1.08993 * 109.47450 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47087 * 300.00400 * 1 2 3 34 34 H 1.09000 * 109.46548 * 59.99892 * 1 2 3 35 35 H 1.08997 * 109.46963 * 239.99595 * 2 1 3 36 36 H 1.09007 * 109.46891 * 119.99887 * 2 1 3 37 37 H 1.08003 * 126.38602 * 359.97438 * 4 3 2 38 38 H 1.08005 * 127.24497 * 179.97438 * 5 4 3 39 39 H 0.96999 * 120.00687 * 0.02562 * 9 7 6 40 40 H 1.08995 * 109.97330 * 79.37927 * 14 12 10 41 41 H 1.09002 * 110.11662 * 317.79176 * 14 12 10 42 42 H 1.08997 * 108.84468 * 294.69526 * 15 14 12 43 43 H 1.09002 * 108.84098 * 176.24211 * 15 14 12 44 44 H 1.09000 * 108.99952 * 73.88001 * 16 15 14 45 45 H 1.09001 * 109.00363 * 192.72391 * 16 15 14 46 46 H 0.96998 * 120.00027 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.47758 * 59.99862 * 29 28 26 48 48 H 1.09001 * 109.47157 * 179.97438 * 29 28 26 49 49 H 1.08996 * 109.47305 * 299.99674 * 29 28 26 50 50 H 1.08995 * 109.47424 * 64.03399 * 30 28 26 51 51 H 1.09009 * 109.46723 * 184.02992 * 30 28 26 52 52 H 1.08995 * 109.47357 * 304.02921 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0824 3.1922 0.5713 6 6 2.3003 3.4124 -0.5871 7 6 2.1857 4.6762 -1.3433 8 8 2.8019 5.6595 -0.9807 9 7 1.3981 4.7391 -2.4351 10 6 1.2841 5.9926 -3.1847 11 1 2.1271 6.6654 -3.0280 12 6 -0.0574 6.6554 -3.0782 13 1 -0.0605 7.6608 -3.4993 14 6 -1.0195 6.5395 -1.9205 15 6 -2.3958 6.9793 -2.4561 16 6 -2.8298 6.1815 -3.6811 17 7 -1.7393 6.0670 -4.6812 18 6 -1.8971 6.3916 -6.0021 19 1 -1.3050 5.8928 -6.7551 20 6 -2.8182 7.3614 -6.3733 21 7 -3.2723 8.2142 -5.4795 22 14 -3.4134 7.4562 -8.1414 23 1 -4.0705 6.1770 -8.5118 24 1 -4.3868 8.5694 -8.2770 25 1 -2.2567 7.6971 -9.0409 26 6 -0.4877 5.5780 -4.1263 27 1 -0.5986 4.5950 -3.6684 28 6 0.8873 5.8066 -4.6797 29 6 1.5069 4.5742 -5.3415 30 6 1.0166 7.0745 -5.5263 31 7 1.6887 2.2771 -0.8597 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3632 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8901 37 1 3.3120 1.3751 1.7455 38 1 3.7124 3.9068 1.0803 39 1 0.9062 3.9547 -2.7242 40 1 -0.7061 7.1959 -1.1088 41 1 -1.0652 5.5074 -1.5729 42 1 -2.3490 8.0353 -2.7220 43 1 -3.1383 6.8476 -1.6690 44 1 -3.1287 5.1818 -3.3660 45 1 -3.6832 6.6775 -4.1436 46 1 -3.9156 8.8922 -5.7390 47 1 0.8771 4.2516 -6.1705 48 1 2.4999 4.8233 -5.7156 49 1 1.5851 3.7698 -4.6102 50 1 0.8365 7.9489 -4.9011 51 1 2.0207 7.1294 -5.9472 52 1 0.2851 7.0483 -6.3339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087304474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:53 Heat of formation + Delta-G solvation = 98.060242 kcal Electronic energy + Delta-G solvation = -32375.262348 eV Core-core repulsion = 28378.386441 eV Total energy + Delta-G solvation = -3996.875907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.58675 -42.53826 -39.86354 -36.92780 -35.44405 -34.74256 -34.38130 -32.15988 -31.61666 -30.98487 -30.60684 -28.36852 -27.55384 -26.71598 -25.35927 -23.97429 -23.31244 -22.32062 -22.18825 -21.14462 -20.47827 -19.70347 -18.71072 -18.48969 -17.62606 -17.09876 -16.76325 -16.42689 -15.96908 -15.71667 -15.47582 -15.38959 -15.22926 -15.18120 -14.76081 -14.48820 -14.26795 -14.15610 -14.02984 -13.91828 -13.48616 -13.26796 -13.17185 -12.95507 -12.94775 -12.72137 -12.67757 -12.53226 -12.28892 -12.27036 -12.12853 -12.06926 -11.79051 -11.74010 -11.48372 -11.29856 -11.18519 -10.81258 -10.61986 -10.24886 -10.22852 -10.04108 -9.83911 -8.43713 -7.76197 -5.17733 0.56601 1.25363 1.49351 1.51917 1.56904 1.58941 2.13928 2.39151 2.56787 3.27185 3.35892 3.40690 3.50026 3.76407 3.91017 3.93066 4.01458 4.08349 4.15193 4.27725 4.29710 4.39715 4.40049 4.50772 4.58936 4.64760 4.74581 4.75914 4.76995 4.82900 4.84794 4.89331 4.90872 4.97789 5.05897 5.10398 5.16910 5.17734 5.23954 5.26235 5.30296 5.39742 5.41831 5.54777 5.60853 5.65059 5.70449 5.78237 5.87727 5.96116 6.46251 6.49469 6.94960 7.18604 7.19349 7.91048 8.56760 9.29349 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003091 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.341356 B = 9057.431101 C = 9397.632231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.276 5.276 4 C 0.002 3.998 5 C -0.205 4.205 6 C -0.046 4.046 7 C 0.604 3.396 8 O -0.572 6.572 9 N -0.680 5.680 10 C 0.152 3.848 11 H 0.091 0.909 12 C -0.165 4.165 13 H 0.077 0.923 14 C -0.076 4.076 15 C -0.111 4.111 16 C 0.158 3.842 17 N -0.583 5.583 18 C -0.231 4.231 19 H 0.067 0.933 20 C -0.046 4.046 21 N -0.922 5.922 22 Si 0.951 3.049 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.277 1.277 26 C 0.140 3.860 27 H 0.053 0.947 28 C -0.058 4.058 29 C -0.127 4.127 30 C -0.116 4.116 31 N -0.274 5.274 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.229 0.771 38 H 0.162 0.838 39 H 0.410 0.590 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.058 0.942 44 H 0.003 0.997 45 H 0.066 0.934 46 H 0.245 0.755 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.041 0.959 51 H 0.064 0.936 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.715 -19.040 12.986 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.066 5.066 4 C -0.140 4.140 5 C -0.233 4.233 6 C -0.204 4.204 7 C 0.390 3.610 8 O -0.450 6.450 9 N -0.330 5.330 10 C 0.046 3.954 11 H 0.109 0.891 12 C -0.186 4.186 13 H 0.095 0.905 14 C -0.114 4.114 15 C -0.150 4.150 16 C 0.033 3.967 17 N -0.305 5.305 18 C -0.361 4.361 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.568 5.568 22 Si 0.781 3.219 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.203 1.203 26 C 0.033 3.967 27 H 0.071 0.929 28 C -0.060 4.060 29 C -0.185 4.185 30 C -0.173 4.173 31 N -0.112 5.112 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.162 0.838 37 H 0.246 0.754 38 H 0.179 0.821 39 H 0.248 0.752 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.020 0.980 45 H 0.085 0.915 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.060 0.940 51 H 0.083 0.917 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.206 -18.846 12.389 25.184 hybrid contribution -0.610 0.912 -0.535 1.220 sum 10.596 -17.934 11.855 23.968 Atomic orbital electron populations 1.22071 0.93594 1.04472 1.02363 1.22468 0.96328 0.74827 1.07306 1.46125 1.31399 1.11030 1.18023 1.23496 0.97636 0.94338 0.98575 1.21997 1.05318 0.97830 0.98159 1.21775 1.04786 0.92891 1.00997 1.17228 0.78213 0.85921 0.79595 1.90744 1.47918 1.37215 1.69074 1.45432 1.46698 1.13657 1.27257 1.21317 0.96929 0.85505 0.91652 0.89133 1.23146 0.95413 1.00408 0.99628 0.90504 1.20904 0.94484 0.99746 0.96257 1.21653 0.96086 0.99983 0.97271 1.20801 0.92620 0.94628 0.88655 1.43978 1.06666 1.74763 1.05075 1.19092 1.19890 1.13754 0.83320 0.91570 1.25545 1.02926 0.95814 0.99918 1.70110 1.34249 1.18078 1.34397 0.85589 0.77939 0.76447 0.81961 1.21085 1.22696 1.20292 1.21955 0.86820 0.94068 0.93880 0.92932 1.21811 0.93935 0.97454 0.92751 1.21639 1.00598 0.95898 1.00324 1.21564 1.01413 0.94508 0.99815 1.73426 1.22155 0.98302 1.17289 0.87774 0.92682 0.93290 0.87775 0.83768 0.75429 0.82052 0.75182 0.93740 0.92756 0.94484 0.92350 0.97958 0.91536 0.94598 0.92666 0.91417 0.92122 0.94022 0.91673 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.01 71.98 0.72 -0.86 16 2 C 0.11 0.75 7.12 86.38 0.61 1.37 16 3 N -0.28 -4.43 3.41 -347.94 -1.19 -5.62 16 4 C 0.00 0.03 11.40 83.54 0.95 0.99 16 5 C -0.20 -4.53 10.81 22.41 0.24 -4.29 16 6 C -0.05 -1.29 7.13 42.46 0.30 -0.99 16 7 C 0.60 20.31 7.83 86.75 0.68 20.99 16 8 O -0.57 -22.68 16.52 -3.95 -0.07 -22.74 16 9 N -0.68 -21.75 4.19 -457.70 -1.92 -23.67 16 10 C 0.15 5.39 3.97 42.47 0.17 5.56 16 11 H 0.09 3.38 7.45 -2.39 -0.02 3.36 16 12 C -0.16 -6.64 2.97 -14.23 -0.04 -6.68 16 13 H 0.08 3.58 5.98 -2.39 -0.01 3.57 16 14 C -0.08 -3.01 5.92 30.31 0.18 -2.83 16 15 C -0.11 -4.82 5.91 30.80 0.18 -4.64 16 16 C 0.16 7.61 5.76 85.85 0.49 8.11 16 17 N -0.58 -28.39 2.91 -689.88 -2.01 -30.40 16 18 C -0.23 -12.12 7.57 84.03 0.64 -11.49 16 19 H 0.07 3.43 7.31 -2.91 -0.02 3.41 16 20 C -0.05 -2.52 5.05 84.86 0.43 -2.09 16 21 N -0.92 -53.10 11.21 21.65 0.24 -52.85 16 22 Si 0.95 44.50 29.59 68.60 2.03 46.53 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 C 0.14 5.69 2.96 42.88 0.13 5.82 16 27 H 0.05 2.09 6.45 -2.39 -0.02 2.07 16 28 C -0.06 -2.07 1.39 -55.18 -0.08 -2.15 16 29 C -0.13 -3.79 9.21 71.98 0.66 -3.13 16 30 C -0.12 -4.39 8.64 71.98 0.62 -3.77 16 31 N -0.27 -6.64 11.35 -48.17 -0.55 -7.18 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.14 -0.16 8.04 -2.38 -0.02 -0.18 16 37 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.41 12.35 6.07 -92.71 -0.56 11.78 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 2.04 7.95 -2.39 -0.02 2.02 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.07 3.64 5.68 -2.39 -0.01 3.63 16 46 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 49 H 0.06 1.65 6.45 -2.39 -0.02 1.64 16 50 H 0.04 1.70 6.10 -2.39 -0.01 1.69 16 51 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 52 H 0.07 2.88 5.52 -2.39 -0.01 2.87 16 Total: -1.00 -70.98 400.96 3.81 -67.17 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.36 Total: 28.85 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 6.89 Total: -0.08 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -5.41 Total: -119.72 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.74 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.98 3.81 -67.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087304474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.232 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds