Wall clock time and date at job start Wed Apr 1 2020 05:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47142 * 2 1 4 4 C 1.35849 * 126.13591 * 270.00581 * 3 2 1 5 5 N 1.30175 * 109.00245 * 179.74379 * 4 3 2 6 6 C 1.35757 * 108.86690 * 0.40909 * 5 4 3 7 7 C 1.47319 * 126.23667 * 179.86086 * 6 5 4 8 8 O 1.21625 * 120.00164 * 179.40874 * 7 6 5 9 9 N 1.34786 * 119.99677 * 359.68181 * 7 6 5 10 10 C 1.46508 * 119.99702 * 179.72572 * 9 7 6 11 11 H 1.08999 * 113.22018 * 22.19609 * 10 9 7 12 12 C 1.49998 * 114.12281 * 249.14586 * 10 9 7 13 13 H 1.08997 * 112.50816 * 322.39218 * 12 10 9 14 14 C 1.51206 * 126.17852 * 104.78937 * 12 10 9 15 15 C 1.54092 * 106.19227 * 161.42909 * 14 12 10 16 16 C 1.52496 * 112.67371 * 304.56206 * 15 14 12 17 17 N 1.47788 * 111.33182 * 47.08818 * 16 15 14 18 18 C 1.36931 * 122.78818 * 127.54896 * 17 16 15 19 19 H 1.08003 * 120.00101 * 225.84534 * 18 17 16 20 20 C 1.38815 * 120.00248 * 45.85107 * 18 17 16 21 21 N 1.31623 * 120.00038 * 207.36124 * 20 18 17 22 22 Si 1.86796 * 119.99988 * 27.35697 * 20 18 17 23 23 H 1.48497 * 109.47248 * 84.80702 * 22 20 18 24 24 H 1.48502 * 109.46932 * 204.80449 * 22 20 18 25 25 H 1.48495 * 109.47137 * 324.80442 * 22 20 18 26 26 C 1.45384 * 114.04111 * 307.12242 * 17 16 15 27 27 H 1.08999 * 112.09151 * 301.58725 * 26 17 16 28 28 C 1.49969 * 126.66392 * 156.37700 * 26 17 16 29 29 C 1.52999 * 114.08488 * 107.56437 * 28 26 17 30 30 C 1.52998 * 114.08256 * 335.14628 * 28 26 17 31 31 C 1.35376 * 126.13416 * 89.99784 * 3 2 1 32 32 H 1.08994 * 109.47600 * 59.99930 * 1 2 3 33 33 H 1.09004 * 109.47508 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47363 * 299.99907 * 1 2 3 35 35 H 1.08998 * 109.46940 * 240.00158 * 2 1 3 36 36 H 1.09002 * 109.47390 * 120.00338 * 2 1 3 37 37 H 1.08005 * 125.49648 * 359.97438 * 4 3 2 38 38 H 0.96997 * 119.99996 * 359.73306 * 9 7 6 39 39 H 1.08996 * 110.10172 * 280.59935 * 14 12 10 40 40 H 1.09004 * 110.09940 * 42.14853 * 14 12 10 41 41 H 1.08993 * 108.84285 * 65.39070 * 15 14 12 42 42 H 1.09002 * 108.83703 * 183.84725 * 15 14 12 43 43 H 1.08999 * 108.99857 * 167.40257 * 16 15 14 44 44 H 1.08997 * 109.00213 * 286.25451 * 16 15 14 45 45 H 0.97001 * 120.00206 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.46989 * 173.91889 * 29 28 26 47 47 H 1.08995 * 109.47649 * 293.92563 * 29 28 26 48 48 H 1.09006 * 109.46566 * 53.92178 * 29 28 26 49 49 H 1.08994 * 109.47471 * 332.27145 * 30 28 26 50 50 H 1.09004 * 109.46984 * 92.26853 * 30 28 26 51 51 H 1.09003 * 109.47027 * 212.26665 * 30 28 26 52 52 H 1.08002 * 126.56781 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2852 2.1365 -1.0971 5 7 2.6947 3.3112 -0.7137 6 6 2.7137 3.3480 0.6433 7 6 3.1179 4.4928 1.4777 8 8 3.0810 4.4047 2.6902 9 7 3.5235 5.6398 0.8975 10 6 3.9198 6.7803 1.7273 11 1 4.2157 6.4950 2.7368 12 6 2.9718 7.9411 1.6669 13 1 2.5621 8.0938 0.6685 14 6 1.9808 8.3409 2.7368 15 6 1.5991 9.8047 2.4436 16 6 2.8125 10.7255 2.3717 17 7 3.8801 10.1434 1.5317 18 6 4.4627 10.8238 0.4960 19 1 4.6105 10.3352 -0.4558 20 6 4.8634 12.1415 0.6693 21 7 4.9101 12.9564 -0.3633 22 14 5.3362 12.7582 2.3679 23 1 6.7612 12.4352 2.6329 24 1 5.1419 14.2291 2.4323 25 1 4.4814 12.1009 3.3888 26 6 4.2607 8.7922 1.9098 27 1 4.6055 8.7371 2.9423 28 6 4.9053 7.7638 1.0289 29 6 6.3787 7.5033 1.3483 30 6 4.6356 7.9630 -0.4639 31 6 2.2844 2.1338 1.0933 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 2.1721 1.8155 -2.1222 38 1 3.5529 5.7101 -0.0695 39 1 1.0968 7.7055 2.6848 40 1 2.4409 8.2620 3.7218 41 1 1.0686 9.8464 1.4924 42 1 0.9356 10.1600 3.2320 43 1 2.5075 11.6818 1.9468 44 1 3.1931 10.8905 3.3796 45 1 5.1897 13.8773 -0.2422 46 1 6.7408 6.6735 0.7414 47 1 6.9621 8.3970 1.1271 48 1 6.4828 7.2536 2.4043 49 1 3.6811 8.4725 -0.5959 50 1 5.4324 8.5656 -0.8999 51 1 4.6011 6.9927 -0.9595 52 1 2.1776 1.8309 2.1245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087314754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:59 Heat of formation + Delta-G solvation = 90.233763 kcal Electronic energy + Delta-G solvation = -31712.453987 eV Core-core repulsion = 27715.238699 eV Total energy + Delta-G solvation = -3997.215288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.39400 -40.90917 -38.54565 -35.41397 -35.37152 -33.11130 -32.85358 -30.84175 -30.65618 -29.83127 -29.33215 -27.11491 -25.87371 -25.13603 -24.14286 -23.05139 -22.06783 -21.21369 -20.52454 -19.85252 -19.46734 -18.48510 -17.74258 -16.66729 -16.26613 -15.87459 -15.62995 -15.03413 -14.97765 -14.54362 -14.24921 -14.08644 -14.02289 -13.89957 -13.77367 -13.37113 -13.24767 -13.00027 -12.86555 -12.66784 -12.60507 -12.39352 -11.97224 -11.94653 -11.62768 -11.54510 -11.23106 -11.06808 -10.92399 -10.64108 -10.46966 -10.38269 -10.27218 -10.21063 -10.04799 -10.00138 -9.75351 -9.52784 -9.50002 -8.88714 -8.85069 -8.42290 -8.22551 -6.40614 -5.97862 -3.41991 1.48312 2.28538 2.32184 3.44757 3.52943 3.54849 3.60078 3.65578 4.07046 4.28628 4.35163 4.44103 4.61127 4.62577 4.77689 4.91577 4.98233 5.04532 5.06193 5.15986 5.25668 5.32255 5.40033 5.46257 5.64733 5.70622 5.79908 5.86002 5.93499 6.02153 6.11644 6.12864 6.19874 6.24515 6.28036 6.40271 6.51485 6.52485 6.57971 6.64337 6.70593 6.74317 6.76005 6.77607 6.94734 6.96701 7.03662 7.08504 7.28266 7.55706 7.95513 8.11665 8.51249 8.56695 9.05304 9.77650 10.37418 11.17347 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002595 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.161284 B =10788.552563 C =11107.606320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.459 5.459 4 C 0.183 3.817 5 N -0.461 5.461 6 C -0.057 4.057 7 C 0.600 3.400 8 O -0.553 6.553 9 N -0.696 5.696 10 C 0.140 3.860 11 H 0.113 0.887 12 C -0.166 4.166 13 H 0.096 0.904 14 C -0.088 4.088 15 C -0.131 4.131 16 C 0.142 3.858 17 N -0.580 5.580 18 C -0.265 4.265 19 H 0.083 0.917 20 C 0.046 3.954 21 N -0.892 5.892 22 Si 0.851 3.149 23 H -0.289 1.289 24 H -0.300 1.300 25 H -0.256 1.256 26 C 0.146 3.854 27 H 0.052 0.948 28 C -0.060 4.060 29 C -0.133 4.133 30 C -0.118 4.118 31 C 0.030 3.970 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.209 0.791 38 H 0.408 0.592 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.024 0.976 45 H 0.262 0.738 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.038 0.962 52 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.226 -26.329 0.038 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.142 5.142 4 C -0.100 4.100 5 N -0.180 5.180 6 C -0.187 4.187 7 C 0.386 3.614 8 O -0.432 6.432 9 N -0.345 5.345 10 C 0.035 3.965 11 H 0.131 0.869 12 C -0.187 4.187 13 H 0.114 0.886 14 C -0.126 4.126 15 C -0.170 4.170 16 C 0.017 3.983 17 N -0.303 5.303 18 C -0.394 4.394 19 H 0.101 0.899 20 C -0.156 4.156 21 N -0.532 5.532 22 Si 0.679 3.321 23 H -0.216 1.216 24 H -0.227 1.227 25 H -0.181 1.181 26 C 0.038 3.962 27 H 0.070 0.930 28 C -0.062 4.062 29 C -0.190 4.190 30 C -0.175 4.175 31 C -0.109 4.109 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.226 0.774 38 H 0.244 0.756 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.057 0.943 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.011 -25.598 0.257 26.542 hybrid contribution 0.073 -0.131 0.937 0.949 sum -6.937 -25.729 1.194 26.675 Atomic orbital electron populations 1.22186 0.93779 1.03395 1.03605 1.21945 0.95879 0.79431 1.05048 1.45532 1.48627 1.13113 1.06879 1.25165 1.03825 0.87474 0.93580 1.70635 1.17746 1.19089 1.10515 1.20718 1.11813 0.95648 0.90483 1.16933 0.76736 0.81392 0.86345 1.90768 1.55740 1.83203 1.13450 1.45865 1.65342 1.12275 1.11022 1.22462 0.96162 0.82541 0.95340 0.86907 1.23389 0.97893 0.96934 1.00492 0.88565 1.21092 0.98048 0.95629 0.97823 1.21972 0.99050 0.95476 1.00546 1.21281 0.87445 0.95402 0.94200 1.43915 1.37562 1.12752 1.36034 1.18777 1.35502 0.94673 0.90416 0.89921 1.25810 0.96817 0.96867 0.96072 1.69963 1.47297 1.05041 1.30911 0.87296 0.79936 0.76859 0.88013 1.21553 1.22694 1.18073 1.21544 0.93246 0.86328 0.95101 0.93019 1.21799 0.93649 0.94209 0.96502 1.21703 0.95449 1.01415 1.00471 1.21621 1.03822 0.99666 0.92405 1.22572 1.03174 0.91977 0.93163 0.91568 0.90332 0.91601 0.88447 0.88732 0.77408 0.75560 0.93638 0.92766 0.92560 0.93225 0.91873 0.95811 0.92838 0.93288 0.91717 0.93147 0.90775 0.91305 0.94266 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.24 37.16 0.38 -0.15 16 2 C 0.10 0.32 6.84 -4.04 -0.03 0.29 16 3 N -0.46 -3.42 2.72 -118.36 -0.32 -3.74 16 4 C 0.18 1.58 12.55 -89.90 -1.13 0.45 16 5 N -0.46 -5.82 11.01 -11.03 -0.12 -5.95 16 6 C -0.06 -0.78 6.98 -83.09 -0.58 -1.36 16 7 C 0.60 9.72 7.81 -12.56 -0.10 9.62 16 8 O -0.55 -10.26 16.47 5.26 0.09 -10.18 16 9 N -0.70 -10.94 5.32 -58.79 -0.31 -11.25 16 10 C 0.14 2.35 3.54 -71.85 -0.25 2.10 16 11 H 0.11 2.00 7.41 -51.93 -0.39 1.61 16 12 C -0.17 -3.00 2.82 -95.83 -0.27 -3.27 16 13 H 0.10 1.87 6.07 -51.93 -0.32 1.56 16 14 C -0.09 -1.55 6.12 -27.06 -0.17 -1.71 16 15 C -0.13 -2.40 5.89 -26.42 -0.16 -2.56 16 16 C 0.14 3.07 4.51 -3.59 -0.02 3.06 16 17 N -0.58 -13.42 2.18 -169.94 -0.37 -13.79 16 18 C -0.27 -7.09 9.16 -15.06 -0.14 -7.23 16 19 H 0.08 2.33 5.53 -52.48 -0.29 2.04 16 20 C 0.05 1.31 5.12 -17.43 -0.09 1.22 16 21 N -0.89 -26.76 13.97 55.49 0.78 -25.98 16 22 Si 0.85 21.65 27.40 -169.99 -4.66 16.99 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.26 -6.20 4.81 56.52 0.27 -5.93 16 26 C 0.15 2.92 3.05 -72.14 -0.22 2.70 16 27 H 0.05 1.06 8.01 -51.93 -0.42 0.64 16 28 C -0.06 -1.06 1.37 -159.15 -0.22 -1.28 16 29 C -0.13 -2.18 9.22 37.16 0.34 -1.84 16 30 C -0.12 -2.09 6.87 37.16 0.26 -1.83 16 31 C 0.03 0.31 11.26 -16.64 -0.19 0.12 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.41 6.14 6.50 -40.82 -0.27 5.88 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.46 7.33 -51.93 -0.38 1.08 16 44 H 0.02 0.53 6.45 -51.93 -0.33 0.19 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 49 H 0.07 1.45 5.53 -51.93 -0.29 1.16 16 50 H 0.07 1.32 7.35 -51.93 -0.38 0.93 16 51 H 0.04 0.59 6.61 -51.93 -0.34 0.25 16 52 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -33.52 400.28 -10.04 -43.56 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.58 Total: 5.98 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.57 Total: -1.67 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.35 Total: -60.72 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.66 Total: 16.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.52 -10.04 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087314754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.789 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds