Wall clock time and date at job start Wed Apr 1 2020 04:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46601 * 2 1 4 4 N 1.39933 * 125.75331 * 269.68996 * 3 2 1 5 5 C 1.30448 * 108.89417 * 179.85119 * 4 3 2 6 6 C 1.41290 * 108.02406 * 0.40900 * 5 4 3 7 7 C 1.47426 * 126.41788 * 179.70181 * 6 5 4 8 8 O 1.21602 * 120.00070 * 174.08707 * 7 6 5 9 9 N 1.34777 * 119.99775 * 354.09038 * 7 6 5 10 10 C 1.46503 * 120.00058 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47093 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.88731 * 51.12421 * 11 10 9 13 13 C 1.54906 * 111.00584 * 287.19488 * 11 10 9 14 14 N 1.47432 * 104.83194 * 204.91880 * 13 11 10 15 15 C 1.36936 * 125.64409 * 204.14736 * 14 13 11 16 16 H 1.08003 * 120.00380 * 6.76489 * 15 14 13 17 17 C 1.38819 * 119.99757 * 186.75639 * 15 14 13 18 18 N 1.31624 * 119.99438 * 352.18472 * 17 15 14 19 19 Si 1.86792 * 120.00000 * 172.18094 * 17 15 14 20 20 H 1.48507 * 109.46993 * 94.97795 * 19 17 15 21 21 H 1.48500 * 109.47049 * 214.97685 * 19 17 15 22 22 H 1.48495 * 109.47302 * 334.98061 * 19 17 15 23 23 C 1.47018 * 108.70346 * 24.12694 * 14 13 11 24 24 C 1.54323 * 107.27057 * 358.94265 * 23 14 13 25 25 H 1.09006 * 110.87629 * 96.24323 * 24 23 14 26 26 C 1.53002 * 110.71935 * 219.44057 * 24 23 14 27 27 C 1.34257 * 125.74927 * 90.00440 * 3 2 1 28 28 C 1.50703 * 126.29691 * 359.97438 * 27 3 2 29 29 C 1.52998 * 117.49689 * 128.48111 * 28 27 3 30 30 C 1.52996 * 117.49563 * 59.82105 * 28 27 3 31 31 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47281 * 59.99653 * 1 2 3 33 33 H 1.09001 * 109.46879 * 299.99301 * 1 2 3 34 34 H 1.08995 * 109.47596 * 119.99943 * 2 1 3 35 35 H 1.09001 * 109.46879 * 240.00699 * 2 1 3 36 36 H 1.07997 * 125.98776 * 180.10854 * 5 4 3 37 37 H 0.97002 * 120.00081 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.46748 * 299.99943 * 10 9 7 39 39 H 1.09001 * 109.47369 * 59.99650 * 10 9 7 40 40 H 1.09005 * 110.36677 * 323.75223 * 13 11 10 41 41 H 1.08994 * 110.36712 * 86.07909 * 13 11 10 42 42 H 0.97008 * 119.99136 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.88426 * 239.52714 * 23 14 13 44 44 H 1.09002 * 110.01207 * 118.42854 * 23 14 13 45 45 H 1.09005 * 109.47171 * 173.52249 * 26 24 23 46 46 H 1.09001 * 109.47409 * 293.52117 * 26 24 23 47 47 H 1.09000 * 109.46948 * 53.52727 * 26 24 23 48 48 H 1.09000 * 115.54829 * 274.15447 * 28 27 3 49 49 H 1.08998 * 117.50336 * 0.02562 * 29 28 27 50 50 H 1.09009 * 117.49231 * 145.02624 * 29 28 27 51 51 H 1.08998 * 117.49694 * 214.98100 * 30 28 27 52 52 H 1.08998 * 117.50290 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2965 2.1502 -1.1356 5 6 2.7076 3.3290 -0.7573 6 6 2.7170 3.3562 0.6553 7 6 3.1192 4.4909 1.5062 8 8 2.9806 4.4254 2.7125 9 7 3.6404 5.6009 0.9470 10 6 4.0396 6.7288 1.7925 11 6 4.5964 7.8518 0.9152 12 1 3.9080 8.0890 0.1041 13 6 5.9975 7.4846 0.3659 14 7 6.6487 8.7796 0.0967 15 6 7.6654 8.9913 -0.7959 16 1 7.9823 8.1944 -1.4524 17 6 8.2887 10.2302 -0.8569 18 7 7.8057 11.2442 -0.1706 19 14 9.8126 10.4580 -1.9126 20 1 9.4184 10.9860 -3.2435 21 1 10.7334 11.4178 -1.2522 22 1 10.4976 9.1513 -2.0817 23 6 6.0253 9.8060 0.9448 24 6 4.9143 9.1129 1.7613 25 1 5.2767 8.8324 2.7504 26 6 3.6829 10.0140 1.8737 27 6 2.2798 2.1209 1.0896 28 6 2.1245 1.6830 2.5233 29 6 3.3213 1.8807 3.4558 30 6 2.9413 0.4746 2.9851 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 0.5137 0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5137 -0.8901 36 1 2.9955 4.1402 -1.4095 37 1 3.7513 5.6530 -0.0152 38 1 3.1732 7.0938 2.3441 39 1 4.8066 6.4028 2.4950 40 1 6.5620 6.9238 1.1109 41 1 5.9050 6.9079 -0.5543 42 1 8.2410 12.1101 -0.2136 43 1 5.5936 10.5895 0.3219 44 1 6.7676 10.2347 1.6181 45 1 2.8726 9.4639 2.3524 46 1 3.9284 10.8920 2.4711 47 1 3.3702 10.3278 0.8778 48 1 1.1289 1.8097 2.9483 49 1 4.2207 2.3279 3.0325 50 1 3.1128 2.1371 4.4946 51 1 2.4832 -0.1935 3.7144 52 1 3.5906 -0.0041 2.2520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093118717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:24 Heat of formation + Delta-G solvation = 61.355160 kcal Electronic energy + Delta-G solvation = -30649.174963 eV Core-core repulsion = 26650.707404 eV Total energy + Delta-G solvation = -3998.467559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.57881 -40.38748 -39.34094 -37.96369 -35.88598 -35.43309 -34.57155 -32.52287 -31.47523 -31.16670 -30.07967 -27.82194 -26.73411 -25.41754 -24.37162 -24.08989 -23.38919 -22.93447 -21.67832 -21.33313 -20.75746 -20.16989 -18.90521 -18.49003 -17.27083 -17.17467 -16.63448 -16.56492 -16.18234 -15.88978 -15.59197 -15.55702 -15.46365 -15.21108 -14.61445 -14.56695 -14.42317 -14.29710 -14.07586 -13.46898 -13.43407 -13.19903 -13.09784 -13.02214 -12.95686 -12.78923 -12.68927 -12.49803 -12.36620 -12.33105 -12.13840 -11.92776 -11.81649 -11.52081 -11.49440 -11.36783 -11.29716 -11.15723 -10.70496 -10.63909 -10.40724 -10.01648 -9.55464 -8.86202 -7.84862 -5.18409 0.49799 1.16662 1.33911 1.45725 1.47524 1.56836 2.37376 2.50236 2.53494 2.79204 3.33447 3.36918 3.47337 3.65493 3.80647 3.90136 3.96253 3.98657 4.00041 4.04338 4.05054 4.14646 4.26657 4.32656 4.42783 4.45703 4.54294 4.64584 4.73146 4.73931 4.78487 4.79630 4.86320 4.90380 4.93121 5.01110 5.02725 5.13124 5.13910 5.18014 5.20886 5.24854 5.37320 5.40798 5.45528 5.50255 5.60371 5.75608 5.83273 5.88512 6.22344 6.51732 6.73097 7.12276 7.40898 7.80263 8.45645 9.26063 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.002254 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.500441 B =12416.662241 C =13155.334400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.351 5.351 4 N -0.319 5.319 5 C 0.081 3.919 6 C -0.313 4.313 7 C 0.591 3.409 8 O -0.569 6.569 9 N -0.717 5.717 10 C 0.151 3.849 11 C -0.090 4.090 12 H 0.088 0.912 13 C 0.138 3.862 14 N -0.629 5.629 15 C -0.241 4.241 16 H 0.082 0.918 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.975 3.025 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.269 1.269 23 C 0.191 3.809 24 C -0.101 4.101 25 H 0.074 0.926 26 C -0.127 4.127 27 C 0.184 3.816 28 C -0.111 4.111 29 C -0.133 4.133 30 C -0.155 4.155 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.210 0.790 37 H 0.407 0.593 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.046 0.954 42 H 0.246 0.754 43 H 0.012 0.988 44 H 0.002 0.998 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.134 0.866 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.130 0.870 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 -24.602 4.525 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.130 5.130 4 N -0.138 5.138 5 C -0.106 4.106 6 C -0.328 4.328 7 C 0.379 3.621 8 O -0.449 6.449 9 N -0.369 5.369 10 C 0.027 3.973 11 C -0.109 4.109 12 H 0.107 0.893 13 C 0.013 3.987 14 N -0.355 5.355 15 C -0.371 4.371 16 H 0.100 0.900 17 C -0.260 4.260 18 N -0.597 5.597 19 Si 0.803 3.197 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.194 1.194 23 C 0.066 3.934 24 C -0.120 4.120 25 H 0.093 0.907 26 C -0.185 4.185 27 C 0.050 3.950 28 C -0.130 4.130 29 C -0.171 4.171 30 C -0.192 4.192 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.226 0.774 37 H 0.243 0.757 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.030 0.970 44 H 0.020 0.980 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.152 0.848 49 H 0.089 0.911 50 H 0.122 0.878 51 H 0.148 0.852 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.449 -25.408 4.261 31.116 hybrid contribution 1.449 1.590 -0.578 2.228 sum -16.000 -23.819 3.682 28.929 Atomic orbital electron populations 1.22138 0.93005 1.04667 1.02305 1.22213 0.96338 0.75892 1.06226 1.48867 1.48587 1.13131 1.02381 1.77149 1.23274 1.04951 1.08451 1.24395 0.96473 0.95986 0.93779 1.20054 1.22120 0.96722 0.93857 1.17357 0.76371 0.81585 0.86770 1.90732 1.56965 1.81983 1.15219 1.45723 1.64185 1.15631 1.11329 1.21082 0.99189 0.84609 0.92398 1.22468 0.96172 0.94263 0.98035 0.89327 1.21754 0.91652 0.87757 0.97508 1.44796 1.40307 1.04721 1.45703 1.19443 1.08171 0.97310 1.12129 0.90028 1.25669 1.02318 0.95926 1.02082 1.70209 1.41707 1.00829 1.46998 0.85115 0.79382 0.77517 0.77656 1.21287 1.22169 1.19411 1.20980 0.91380 0.90023 0.90978 1.22307 0.96348 0.95167 0.98227 0.90729 1.21640 0.96226 0.98996 1.01591 1.20827 0.93730 0.90336 0.90118 1.20500 0.99312 1.05799 0.87428 1.22673 0.96866 0.98273 0.99269 1.23294 1.01626 0.90850 1.03457 0.87599 0.93184 0.92280 0.86358 0.87671 0.77386 0.75705 0.90769 0.92505 0.96575 0.93524 0.94465 0.97009 0.97951 0.90563 0.92776 0.93335 0.84825 0.91061 0.87765 0.85172 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.24 71.98 0.74 -0.64 16 2 C 0.11 1.17 6.93 86.38 0.60 1.77 16 3 N -0.35 -6.60 3.58 -332.97 -1.19 -7.79 16 4 N -0.32 -7.26 12.50 -56.28 -0.70 -7.96 16 5 C 0.08 1.75 11.50 85.65 0.99 2.73 16 6 C -0.31 -7.55 6.10 -20.15 -0.12 -7.68 16 7 C 0.59 16.11 7.70 86.66 0.67 16.78 16 8 O -0.57 -18.06 13.68 -4.04 -0.06 -18.11 16 9 N -0.72 -17.88 5.49 -466.37 -2.56 -20.44 16 10 C 0.15 4.15 5.13 86.38 0.44 4.60 16 11 C -0.09 -2.86 2.50 -9.40 -0.02 -2.88 16 12 H 0.09 2.72 8.05 -2.39 -0.02 2.70 16 13 C 0.14 5.50 6.65 86.85 0.58 6.08 16 14 N -0.63 -32.50 3.39 -691.99 -2.35 -34.85 16 15 C -0.24 -13.67 10.26 84.04 0.86 -12.81 16 16 H 0.08 4.41 7.84 -2.91 -0.02 4.38 16 17 C -0.07 -3.86 5.48 84.86 0.46 -3.40 16 18 N -0.95 -57.89 10.38 21.65 0.22 -57.66 16 19 Si 0.97 46.34 29.56 68.60 2.03 48.37 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 C 0.19 9.50 4.98 86.73 0.43 9.93 16 24 C -0.10 -3.61 3.02 -9.60 -0.03 -3.64 16 25 H 0.07 2.59 8.04 -2.38 -0.02 2.57 16 26 C -0.13 -3.79 9.16 71.98 0.66 -3.13 16 27 C 0.18 3.87 6.43 42.14 0.27 4.14 16 28 C -0.11 -1.88 5.17 -11.54 -0.06 -1.94 16 29 C -0.13 -2.51 8.07 30.62 0.25 -2.27 16 30 C -0.16 -1.79 8.94 30.62 0.27 -1.52 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 0.73 6.30 -2.39 -0.02 0.71 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.21 3.32 7.53 -2.91 -0.02 3.30 16 37 H 0.41 8.68 7.46 -92.71 -0.69 7.99 16 38 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 39 H 0.06 1.71 7.96 -2.39 -0.02 1.69 16 40 H 0.02 0.67 7.91 -2.38 -0.02 0.65 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 43 H 0.01 0.65 7.18 -2.39 -0.02 0.63 16 44 H 0.00 0.13 7.36 -2.39 -0.02 0.11 16 45 H 0.08 1.83 8.10 -2.38 -0.02 1.81 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 48 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.07 1.74 7.71 -2.39 -0.02 1.72 16 50 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.13 0.81 8.14 -2.39 -0.02 0.80 16 52 H 0.09 1.07 7.88 -2.39 -0.02 1.05 16 Total: -1.00 -75.45 415.22 2.59 -72.86 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.22 Total: 19.46 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.98 Total: 6.14 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -6.58 Total: -128.71 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.06 Total: -18.11 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.45 2.59 -72.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093118717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.211 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds