Wall clock time and date at job start Wed Apr 1 2020 04:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46996 * 2 1 4 4 C 1.34261 * 125.74991 * 125.00278 * 3 2 1 5 5 C 1.38047 * 107.41576 * 180.02562 * 4 3 2 6 6 C 1.47423 * 126.41170 * 179.97438 * 5 4 3 7 7 O 1.21612 * 119.99578 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00317 * 0.02562 * 6 5 4 9 9 C 1.46501 * 119.99891 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.68738 * 37.01458 * 9 8 6 11 11 C 1.55482 * 110.61171 * 160.15479 * 9 8 6 12 12 C 1.55841 * 103.32865 * 118.41411 * 11 9 8 13 13 H 1.08996 * 116.12580 * 159.24059 * 12 11 9 14 14 C 1.56868 * 105.77845 * 288.56620 * 12 11 9 15 15 C 1.54851 * 103.35089 * 71.45500 * 14 12 11 16 16 C 1.55839 * 103.45022 * 0.27590 * 15 14 12 17 17 H 1.09005 * 115.56558 * 158.80572 * 16 15 14 18 18 N 1.50230 * 101.05289 * 33.02381 * 12 11 9 19 19 C 1.36940 * 130.83569 * 126.06090 * 18 12 11 20 20 H 1.08005 * 119.99704 * 179.97438 * 19 18 12 21 21 C 1.38807 * 120.00312 * 359.67162 * 19 18 12 22 22 N 1.31618 * 119.99655 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00330 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46688 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47186 * 119.99680 * 23 21 19 26 26 H 1.48495 * 109.47120 * 240.00043 * 23 21 19 27 27 C 1.41291 * 107.16954 * 0.22691 * 5 4 3 28 28 C 1.50699 * 125.98691 * 179.74206 * 27 5 4 29 29 C 1.53004 * 109.47161 * 119.99723 * 28 27 5 30 30 C 1.53004 * 109.46900 * 239.99452 * 28 27 5 31 31 N 1.30452 * 108.02098 * 359.61486 * 27 5 4 32 32 H 1.09000 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47519 * 300.00126 * 1 2 3 34 34 H 1.09009 * 109.47215 * 59.99756 * 1 2 3 35 35 H 1.08996 * 109.46937 * 240.00356 * 2 1 3 36 36 H 1.08997 * 109.46821 * 120.00106 * 2 1 3 37 37 H 1.08005 * 126.29089 * 359.97438 * 4 3 2 38 38 H 0.96996 * 120.00229 * 0.02562 * 8 6 5 39 39 H 1.09005 * 110.60183 * 359.97438 * 11 9 8 40 40 H 1.08992 * 110.89584 * 236.97017 * 11 9 8 41 41 H 1.09005 * 110.42961 * 313.10908 * 14 12 11 42 42 H 1.08992 * 111.04189 * 190.09399 * 14 12 11 43 43 H 1.09007 * 110.62938 * 241.78342 * 15 14 12 44 44 H 1.09005 * 110.62191 * 118.76666 * 15 14 12 45 45 H 0.97001 * 119.99787 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.47161 * 359.97438 * 28 27 5 47 47 H 1.08996 * 109.46695 * 179.97438 * 29 28 27 48 48 H 1.09003 * 109.46838 * 300.00092 * 29 28 27 49 49 H 1.08996 * 109.47090 * 59.99947 * 29 28 27 50 50 H 1.08998 * 109.47008 * 60.00218 * 30 28 27 51 51 H 1.09004 * 109.46624 * 180.02562 * 30 28 27 52 52 H 1.08996 * 109.47428 * 300.00099 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8691 1.9125 0.8925 5 6 3.0705 3.2311 0.5372 6 6 3.9314 4.2037 1.2346 7 8 4.0234 5.3425 0.8181 8 7 4.6164 3.8307 2.3338 9 6 5.4723 4.7970 3.0264 10 1 5.0200 5.7887 3.0163 11 6 5.7522 4.3341 4.4841 12 6 7.3002 4.1572 4.5139 13 1 7.7668 4.1781 5.4987 14 6 7.6001 2.8785 3.6562 15 6 7.3149 3.3447 2.2074 16 6 6.8911 4.8341 2.3827 17 1 6.9885 5.4586 1.4945 18 7 7.7317 5.2358 3.5613 19 6 8.6217 6.2648 3.7174 20 1 8.8026 6.9505 2.9028 21 6 9.2865 6.4305 4.9246 22 7 9.0611 5.5987 5.9195 23 14 10.5010 7.8337 5.1373 24 1 10.5745 8.6196 3.8794 25 1 10.0514 8.7138 6.2457 26 1 11.8428 7.2831 5.4555 27 6 2.2926 3.4757 -0.6166 28 6 2.1945 4.7843 -1.3575 29 6 2.6682 4.5909 -2.7994 30 6 0.7411 5.2624 -1.3579 31 7 1.6763 2.3694 -0.9298 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.3134 1.4022 1.7344 38 1 4.5433 2.9222 2.6658 39 1 5.2531 3.3867 4.6882 40 1 5.4386 5.0935 5.2002 41 1 6.9298 2.0661 3.9372 42 1 8.6402 2.5707 3.7629 43 1 6.5032 2.7635 1.7696 44 1 8.2145 3.2708 1.5962 45 1 9.5259 5.7142 6.7630 46 1 2.8212 5.5282 -0.8656 47 1 2.5968 5.5373 -3.3353 48 1 3.7036 4.2502 -2.7991 49 1 2.0412 3.8471 -3.2911 50 1 0.4036 5.4002 -0.3307 51 1 0.6701 6.2087 -1.8942 52 1 0.1141 4.5187 -1.8496 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096082351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:13 Heat of formation + Delta-G solvation = 75.470988 kcal Electronic energy + Delta-G solvation = -31560.752722 eV Core-core repulsion = 27562.897272 eV Total energy + Delta-G solvation = -3997.855450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57712 -39.67273 -37.98682 -36.03271 -34.05003 -33.65261 -32.29538 -30.51613 -29.72944 -29.15568 -28.87976 -27.29447 -27.11671 -24.53613 -24.24474 -22.98305 -21.84708 -21.32561 -20.22929 -19.42056 -19.17877 -18.41562 -17.62951 -16.86478 -16.27794 -15.84398 -15.25388 -14.94916 -14.80642 -14.68329 -14.53301 -14.31817 -13.99987 -13.73625 -13.61936 -13.31717 -13.12841 -12.63794 -12.49417 -12.31599 -12.20705 -12.14265 -11.82667 -11.73590 -11.48437 -11.43099 -11.17268 -11.00891 -10.94754 -10.88998 -10.85704 -10.80514 -10.68546 -10.16193 -10.03113 -9.78556 -9.46487 -9.44671 -9.33029 -9.17834 -8.91284 -8.76030 -8.37099 -6.87679 -5.70217 -3.07651 1.44588 2.14796 2.19505 3.41185 3.47214 3.49397 3.62164 3.71340 4.06983 4.41248 4.48554 4.49570 4.57692 4.75780 4.91856 5.10739 5.17298 5.21872 5.24428 5.31537 5.34799 5.42045 5.50045 5.57963 5.65204 5.65273 5.69700 5.84346 5.85027 5.89600 5.91225 6.00490 6.02802 6.12029 6.14442 6.25703 6.29370 6.35934 6.36327 6.53993 6.58424 6.63741 6.67517 6.76950 6.87367 7.01531 7.05066 7.30478 7.51958 7.56486 7.79182 7.97307 8.19857 8.67012 9.13580 9.76027 10.56740 11.39563 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.002707 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.119705 B =10341.718425 C =11398.211783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.361 5.361 4 C 0.093 3.907 5 C -0.279 4.279 6 C 0.589 3.411 7 O -0.542 6.542 8 N -0.711 5.711 9 C 0.131 3.869 10 H 0.083 0.917 11 C -0.138 4.138 12 C 0.153 3.847 13 H 0.154 0.846 14 C -0.137 4.137 15 C -0.129 4.129 16 C 0.129 3.871 17 H 0.084 0.916 18 N -0.591 5.591 19 C -0.206 4.206 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.924 5.924 23 Si 0.916 3.084 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.140 3.860 28 C -0.032 4.032 29 C -0.138 4.138 30 C -0.138 4.138 31 N -0.296 5.296 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.180 0.820 38 H 0.390 0.610 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.253 0.747 46 H 0.120 0.880 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.060 0.940 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 -13.199 -10.425 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.140 5.140 4 C -0.058 4.058 5 C -0.294 4.294 6 C 0.376 3.624 7 O -0.421 6.421 8 N -0.361 5.361 9 C 0.026 3.974 10 H 0.101 0.899 11 C -0.178 4.178 12 C 0.047 3.953 13 H 0.171 0.829 14 C -0.176 4.176 15 C -0.169 4.169 16 C 0.020 3.980 17 H 0.103 0.897 18 N -0.312 5.312 19 C -0.334 4.334 20 H 0.097 0.903 21 C -0.209 4.209 22 N -0.573 5.573 23 Si 0.747 3.253 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.028 4.028 28 C -0.052 4.052 29 C -0.196 4.196 30 C -0.195 4.195 31 N -0.117 5.117 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.197 0.803 38 H 0.224 0.776 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.137 0.863 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.579 -12.910 -11.359 24.591 hybrid contribution 1.155 0.264 0.945 1.516 sum -16.424 -12.646 -10.414 23.197 Atomic orbital electron populations 1.22050 0.93538 1.02932 1.03775 1.21781 0.96335 0.77130 1.04092 1.48491 1.34479 1.10386 1.20610 1.23075 0.93457 0.94002 0.95236 1.20389 1.11116 0.94422 1.03519 1.17237 0.78663 0.86589 0.79943 1.90695 1.65513 1.20051 1.65829 1.46053 1.46800 1.14678 1.28537 1.22696 0.90736 0.91697 0.92321 0.89871 1.23344 1.00845 0.99414 0.94175 1.23949 0.88999 0.84830 0.97560 0.82939 1.23216 0.99890 0.98480 0.96046 1.22882 0.99237 0.97787 0.96993 1.23188 0.89540 0.93533 0.91719 0.89745 1.46500 1.45586 1.30175 1.08909 1.19123 1.13765 1.02715 0.97835 0.90261 1.24686 1.00795 0.99463 0.95941 1.69444 1.45811 1.38281 1.03776 0.85962 0.80525 0.81277 0.77559 1.20540 1.21818 1.21884 1.22380 0.92604 0.94570 0.93207 1.19988 0.98814 0.91111 0.95300 1.21765 1.01257 1.01754 0.94816 1.21764 0.94983 1.00947 1.01853 1.77074 1.24572 0.96661 1.13362 0.90611 0.91977 0.90969 0.89463 0.88373 0.80308 0.77643 0.92922 0.91553 0.93927 0.92716 0.93149 0.93173 0.93686 0.86253 0.92064 0.92659 0.92635 0.92772 0.92063 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.09 37.16 0.37 -0.54 16 2 C 0.13 0.74 7.21 -4.04 -0.03 0.71 16 3 N -0.36 -3.58 3.65 -60.81 -0.22 -3.80 16 4 C 0.09 0.94 10.95 -16.56 -0.18 0.76 16 5 C -0.28 -3.79 6.13 -105.07 -0.64 -4.44 16 6 C 0.59 9.47 7.81 -12.52 -0.10 9.38 16 7 O -0.54 -10.57 14.30 5.27 0.08 -10.50 16 8 N -0.71 -10.57 3.66 -52.14 -0.19 -10.77 16 9 C 0.13 2.45 3.10 -65.09 -0.20 2.25 16 10 H 0.08 1.75 7.71 -51.93 -0.40 1.35 16 11 C -0.14 -2.58 6.25 -23.90 -0.15 -2.73 16 12 C 0.15 3.41 4.72 -62.23 -0.29 3.12 16 13 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16 14 C -0.14 -2.60 6.50 -23.66 -0.15 -2.76 16 15 C -0.13 -2.39 6.34 -24.24 -0.15 -2.55 16 16 C 0.13 2.72 5.29 -62.80 -0.33 2.39 16 17 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 18 N -0.59 -14.70 2.97 -145.21 -0.43 -15.13 16 19 C -0.21 -5.70 10.59 -15.06 -0.16 -5.86 16 20 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.92 -26.15 10.47 55.49 0.58 -25.57 16 23 Si 0.92 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.14 1.91 5.77 -82.02 -0.47 1.44 16 28 C -0.03 -0.41 3.26 -91.77 -0.30 -0.71 16 29 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 30 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 31 N -0.30 -3.73 12.33 33.90 0.42 -3.31 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.31 8.06 -51.93 -0.42 -0.11 16 37 H 0.18 1.13 7.46 -52.48 -0.39 0.74 16 38 H 0.39 4.63 6.98 -40.82 -0.28 4.35 16 39 H 0.05 0.81 7.41 -51.93 -0.38 0.43 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.12 1.82 5.60 -51.93 -0.29 1.53 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 409.40 15.07 6.17 6.17 Total: -1.00 -32.69 409.40 -9.50 -42.20 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.67 Total: 6.06 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.21 Total: -2.43 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.16 Total: -58.57 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.69 -9.50 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096082351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.666 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds