Wall clock time and date at job start Wed Apr 1 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47408 * 2 1 4 4 N 1.28447 * 125.18915 * 85.17972 * 3 2 1 5 5 C 1.30865 * 110.92554 * 179.74060 * 4 3 2 6 6 C 1.50699 * 126.06669 * 179.97438 * 5 4 3 7 7 C 1.53006 * 117.49892 * 163.64636 * 6 5 4 8 8 C 1.53001 * 60.00043 * 252.50983 * 7 6 5 9 9 C 1.39669 * 107.86407 * 0.02562 * 5 4 3 10 10 C 1.36601 * 125.19016 * 264.88304 * 3 2 1 11 11 C 1.47158 * 126.88421 * 0.24345 * 10 3 2 12 12 O 1.21628 * 119.99925 * 6.58893 * 11 10 3 13 13 N 1.34774 * 120.00182 * 186.60063 * 11 10 3 14 14 C 1.48116 * 127.03672 * 185.50353 * 13 11 10 15 15 C 1.54595 * 103.42391 * 219.28374 * 14 13 11 16 16 H 1.08997 * 110.72891 * 81.24528 * 15 14 13 17 17 C 1.53000 * 110.83092 * 204.44326 * 15 14 13 18 18 N 1.46503 * 109.47480 * 288.56268 * 17 15 14 19 19 C 1.36938 * 119.99853 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00146 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99661 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00132 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46935 * 90.00434 * 23 21 19 25 25 H 1.48494 * 109.47711 * 210.00338 * 23 21 19 26 26 H 1.48502 * 109.47325 * 330.00825 * 23 21 19 27 27 C 1.54612 * 102.91063 * 322.86588 * 15 14 13 28 28 H 1.09002 * 110.41469 * 262.76044 * 27 15 14 29 29 C 1.53007 * 110.32350 * 140.59004 * 27 15 14 30 30 C 1.47487 * 127.03095 * 5.81671 * 13 11 10 31 31 H 1.08991 * 109.47249 * 304.99680 * 1 2 3 32 32 H 1.09001 * 109.46649 * 64.99738 * 1 2 3 33 33 H 1.09004 * 109.46999 * 184.99566 * 1 2 3 34 34 H 1.08998 * 109.47636 * 240.00025 * 2 1 3 35 35 H 1.09007 * 109.47135 * 119.99687 * 2 1 3 36 36 H 1.08997 * 115.54970 * 309.35267 * 6 5 4 37 37 H 1.09007 * 117.49228 * 359.97438 * 7 6 5 38 38 H 1.08996 * 117.49841 * 145.01828 * 7 6 5 39 39 H 1.08999 * 117.49718 * 252.51373 * 8 7 6 40 40 H 1.08998 * 117.52174 * 107.48108 * 8 7 6 41 41 H 1.07997 * 127.32772 * 180.02562 * 9 5 4 42 42 H 1.09004 * 110.65973 * 337.76807 * 14 13 11 43 43 H 1.09003 * 110.66193 * 100.88132 * 14 13 11 44 44 H 1.09004 * 109.47336 * 48.56198 * 17 15 14 45 45 H 1.09002 * 109.47306 * 168.56167 * 17 15 14 46 46 H 0.96999 * 119.99685 * 0.02562 * 18 17 15 47 47 H 0.97000 * 120.00208 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.47498 * 298.10135 * 29 27 15 49 49 H 1.09005 * 109.46596 * 58.10880 * 29 27 15 50 50 H 1.09003 * 109.46880 * 178.09803 * 29 27 15 51 51 H 1.08996 * 109.91027 * 273.87665 * 30 13 11 52 52 H 1.08998 * 109.91665 * 35.16044 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1820 2.1085 1.0460 5 6 2.6355 3.2933 0.7252 6 6 2.9472 4.4135 1.6839 7 6 3.8140 5.5641 1.1683 8 6 4.3945 4.5539 2.1599 9 6 2.7784 3.3359 -0.6635 10 6 2.3747 2.0902 -1.1119 11 6 2.3367 1.6232 -2.5069 12 8 1.8462 0.5426 -2.7733 13 7 2.8457 2.3928 -3.4893 14 6 2.7898 2.1323 -4.9463 15 6 4.1830 2.5803 -5.4447 16 1 4.9240 1.8000 -5.2713 17 6 4.1349 2.9592 -6.9262 18 7 3.9715 1.7486 -7.7350 19 6 3.9029 1.8408 -9.0995 20 1 3.9688 2.8060 -9.5795 21 6 3.7487 0.6937 -9.8658 22 7 3.6679 -0.4826 -9.2808 23 14 3.6544 0.8195 -11.7271 24 1 5.0209 0.7188 -12.2999 25 1 2.8135 -0.2843 -12.2560 26 1 3.0541 2.1240 -12.1053 27 6 4.4797 3.8212 -4.5715 28 1 4.2268 4.7345 -5.1102 29 6 5.9526 3.8399 -4.1575 30 6 3.5780 3.6635 -3.3330 31 1 -0.3633 0.5893 0.8418 32 1 -0.3633 0.4344 -0.9314 33 1 -0.3633 -1.0238 0.0895 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.1577 4.6572 2.3948 37 1 4.1591 5.5105 0.1357 38 1 3.5947 6.5650 1.5398 39 1 4.5571 4.8903 3.1839 40 1 5.1212 3.8358 1.7800 41 1 3.1301 4.1642 -1.2606 42 1 2.6352 1.0711 -5.1416 43 1 2.0063 2.7286 -5.4138 44 1 3.2940 3.6301 -7.1026 45 1 5.0629 3.4591 -7.2038 46 1 3.9120 0.8817 -7.3038 47 1 3.5605 -1.2842 -9.8162 48 1 6.1727 2.9569 -3.5577 49 1 6.5804 3.8397 -5.0487 50 1 6.1539 4.7367 -3.5716 51 1 2.8736 4.4935 -3.2785 52 1 4.1887 3.6315 -2.4308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106296924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:23 Heat of formation + Delta-G solvation = 83.962623 kcal Electronic energy + Delta-G solvation = -30972.445909 eV Core-core repulsion = 26974.958684 eV Total energy + Delta-G solvation = -3997.487225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.78978 -39.98101 -38.00981 -37.42511 -34.86555 -34.32751 -32.95185 -31.60185 -31.07037 -29.88970 -28.95336 -26.71134 -25.67527 -24.75368 -23.85225 -23.02355 -22.57662 -21.94890 -21.05049 -20.68615 -19.94939 -18.93313 -17.51622 -16.97321 -16.66720 -16.31777 -15.96479 -15.51008 -15.20749 -14.81563 -14.75806 -14.61301 -14.22445 -14.05093 -13.78958 -13.47233 -13.25300 -13.03573 -12.92657 -12.76781 -12.48571 -12.40419 -12.14969 -12.01379 -11.88021 -11.80666 -11.49713 -11.34757 -11.21457 -11.10980 -10.92199 -10.86759 -10.62663 -10.51991 -10.44469 -10.37731 -10.05339 -9.98371 -9.67706 -9.26279 -9.01852 -8.89020 -8.67390 -6.93713 -5.76387 -3.05926 1.13976 2.13395 2.29011 2.95287 3.10771 3.43565 3.48508 3.50561 3.53786 4.06271 4.23791 4.50754 4.53582 4.56981 4.61536 4.67238 4.76820 4.80263 4.85018 4.96731 5.01722 5.07284 5.19353 5.26441 5.32013 5.37548 5.41764 5.45647 5.47030 5.52006 5.57236 5.59059 5.65964 5.73689 5.76858 5.81459 5.85859 5.86966 5.93584 6.01616 6.07533 6.14164 6.17286 6.27403 6.36725 6.43553 6.57692 6.68874 6.81302 7.43536 7.69297 7.87845 8.04263 8.41731 9.53041 10.09927 10.44116 11.46218 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002500 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.786662 B =11197.877674 C =12760.025974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.253 5.253 4 N -0.271 5.271 5 C 0.050 3.950 6 C -0.072 4.072 7 C -0.166 4.166 8 C -0.167 4.167 9 C -0.192 4.192 10 C -0.026 4.026 11 C 0.604 3.396 12 O -0.537 6.537 13 N -0.604 5.604 14 C 0.117 3.883 15 C -0.102 4.102 16 H 0.085 0.915 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.101 4.101 28 H 0.090 0.910 29 C -0.142 4.142 30 C 0.095 3.905 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.167 0.833 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.055 0.945 51 H 0.071 0.929 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 11.134 24.325 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.040 5.040 4 N -0.104 5.104 5 C -0.106 4.106 6 C -0.092 4.092 7 C -0.204 4.204 8 C -0.205 4.205 9 C -0.221 4.221 10 C -0.154 4.154 11 C 0.392 3.608 12 O -0.415 6.415 13 N -0.337 5.337 14 C -0.004 4.004 15 C -0.122 4.122 16 H 0.103 0.897 17 C 0.037 3.963 18 N -0.377 5.377 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.120 4.120 28 H 0.108 0.892 29 C -0.199 4.199 30 C -0.028 4.028 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.184 0.816 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.089 0.911 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.070 9.710 24.980 26.822 hybrid contribution 0.105 0.175 -1.587 1.600 sum -0.965 9.884 23.392 25.413 Atomic orbital electron populations 1.22072 0.93337 1.03472 1.03200 1.22233 0.96404 0.76303 1.05872 1.45797 1.44103 1.12352 1.01764 1.73052 1.19251 1.04429 1.13619 1.20982 1.04155 0.92728 0.92695 1.20005 0.94979 0.94402 0.99806 1.23005 1.02958 0.94377 1.00044 1.22991 0.95361 1.02445 0.99719 1.22451 1.07564 0.97294 0.94758 1.21354 1.10114 0.94072 0.89890 1.16431 0.78581 0.83493 0.82287 1.90809 1.46786 1.20712 1.83213 1.48434 1.54689 1.23303 1.07235 1.22597 0.97748 1.03480 0.76561 1.22521 0.96427 0.96979 0.96243 0.89702 1.20628 0.98030 0.90869 0.86751 1.42378 1.88416 1.03612 1.03344 1.19199 1.42268 0.93056 0.82711 0.91167 1.24752 1.02852 0.95350 0.97969 1.69659 1.56873 0.97184 1.34275 0.86198 0.77430 0.76915 0.85675 1.21735 1.21784 1.20761 1.22122 0.95350 0.99655 0.94896 0.89201 1.21842 0.94925 1.01423 1.01745 1.22628 0.94799 0.85870 0.99529 0.91917 0.91441 0.90048 0.86298 0.88570 0.86501 0.88320 0.88065 0.88326 0.88671 0.81592 0.88970 0.90283 0.96032 0.95809 0.78210 0.93467 0.92691 0.91706 0.92634 0.91068 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.24 37.15 0.38 -1.22 16 2 C 0.11 1.22 6.59 -4.04 -0.03 1.19 16 3 N -0.25 -3.28 3.35 -57.14 -0.19 -3.47 16 4 N -0.27 -3.49 11.90 33.64 0.40 -3.09 16 5 C 0.05 0.57 6.85 -82.47 -0.57 0.01 16 6 C -0.07 -0.61 6.33 -91.77 -0.58 -1.19 16 7 C -0.17 -1.05 10.02 -26.73 -0.27 -1.32 16 8 C -0.17 -1.17 10.23 -26.73 -0.27 -1.45 16 9 C -0.19 -2.16 8.63 -38.98 -0.34 -2.50 16 10 C -0.03 -0.35 6.90 -82.06 -0.57 -0.91 16 11 C 0.60 9.26 7.85 -12.64 -0.10 9.16 16 12 O -0.54 -9.68 14.87 5.25 0.08 -9.60 16 13 N -0.60 -8.40 3.29 -171.34 -0.56 -8.96 16 14 C 0.12 1.86 6.46 -2.31 -0.01 1.84 16 15 C -0.10 -1.54 2.61 -88.93 -0.23 -1.77 16 16 H 0.08 1.40 7.86 -51.93 -0.41 0.99 16 17 C 0.17 3.10 5.58 -4.04 -0.02 3.07 16 18 N -0.73 -18.09 5.52 -59.90 -0.33 -18.42 16 19 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.10 -1.11 3.17 -89.25 -0.28 -1.39 16 28 H 0.09 0.91 7.85 -51.93 -0.41 0.50 16 29 C -0.14 -1.40 8.89 37.16 0.33 -1.07 16 30 C 0.09 0.98 4.89 -2.98 -0.01 0.97 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.12 1.45 6.19 -51.93 -0.32 1.13 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.60 7.22 -51.93 -0.38 0.22 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.17 1.47 4.53 -52.49 -0.24 1.23 16 42 H 0.09 1.72 7.81 -51.93 -0.41 1.31 16 43 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 44 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 52 H 0.08 0.76 5.43 -51.93 -0.28 0.48 16 LS Contribution 415.79 15.07 6.27 6.27 Total: -1.00 -33.23 415.79 -10.06 -43.29 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.61 Total: 8.05 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.82 Total: -3.86 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.04 Total: -61.48 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.23 -10.06 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106296924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.255 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds