Wall clock time and date at job start Wed Apr 1 2020 04:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47196 * 2 1 4 4 C 1.34259 * 125.75317 * 124.99961 * 3 2 1 5 5 C 1.38041 * 107.41566 * 180.20561 * 4 3 2 6 6 C 1.47437 * 126.41582 * 179.73831 * 5 4 3 7 7 O 1.21599 * 119.99995 * 188.42529 * 6 5 4 8 8 N 1.34774 * 119.99642 * 8.42557 * 6 5 4 9 9 C 1.48113 * 127.84546 * 6.38977 * 8 6 5 10 10 C 1.54699 * 104.51128 * 140.23521 * 9 8 6 11 11 H 1.08995 * 112.01450 * 262.66102 * 10 9 8 12 12 C 1.54162 * 109.52038 * 137.99775 * 10 9 8 13 13 C 1.54849 * 104.32595 * 270.98202 * 12 10 9 14 14 C 1.56262 * 103.31676 * 322.37350 * 13 12 10 15 15 C 1.54163 * 103.65768 * 37.04123 * 14 13 12 16 16 C 1.52996 * 111.81932 * 214.43098 * 15 14 13 17 17 N 1.46501 * 109.47461 * 298.61392 * 16 15 14 18 18 C 1.36932 * 120.00610 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99728 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00430 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99980 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99779 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46722 * 90.00364 * 22 20 18 24 24 H 1.48499 * 109.46884 * 209.99644 * 22 20 18 25 25 H 1.48492 * 109.47370 * 330.00117 * 22 20 18 26 26 C 1.48120 * 127.83769 * 186.71145 * 8 6 5 27 27 C 1.41295 * 107.17228 * 359.64128 * 5 4 3 28 28 C 1.50697 * 125.99011 * 180.15971 * 27 5 4 29 29 N 1.30451 * 108.02230 * 0.36602 * 27 5 4 30 30 H 1.09004 * 109.46936 * 60.00073 * 1 2 3 31 31 H 1.09001 * 109.47484 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47282 * 300.00346 * 1 2 3 33 33 H 1.08995 * 109.46702 * 239.99906 * 2 1 3 34 34 H 1.08995 * 109.46783 * 119.99861 * 2 1 3 35 35 H 1.07994 * 126.29410 * 359.94408 * 4 3 2 36 36 H 1.09000 * 110.39241 * 259.08283 * 9 8 6 37 37 H 1.09000 * 110.39444 * 21.46992 * 9 8 6 38 38 H 1.09001 * 110.46136 * 29.68946 * 12 10 9 39 39 H 1.09001 * 110.46307 * 152.27162 * 12 10 9 40 40 H 1.08997 * 110.75871 * 80.11716 * 13 12 10 41 41 H 1.08999 * 110.75869 * 203.31862 * 13 12 10 42 42 H 1.09001 * 109.43139 * 279.18480 * 14 13 12 43 43 H 1.09012 * 112.12678 * 156.19233 * 14 13 12 44 44 H 1.09000 * 109.47464 * 58.61567 * 16 15 14 45 45 H 1.09004 * 109.47083 * 178.61713 * 16 15 14 46 46 H 0.96998 * 119.99400 * 0.02562 * 17 16 15 47 47 H 0.97001 * 119.99472 * 179.97438 * 21 20 18 48 48 H 1.08992 * 110.39375 * 338.52090 * 26 8 6 49 49 H 1.09005 * 110.38849 * 100.80670 * 26 8 6 50 50 H 1.09004 * 109.47432 * 270.26068 * 28 27 5 51 51 H 1.09002 * 109.47435 * 30.26340 * 28 27 5 52 52 H 1.09001 * 109.47379 * 150.26671 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9125 0.8925 5 6 3.0674 3.2322 0.5395 6 6 3.9233 4.2066 1.2406 7 8 3.8965 5.3797 0.9214 8 7 4.7355 3.7971 2.2351 9 6 5.0032 2.4088 2.6764 10 6 6.5194 2.3850 2.9827 11 1 7.0985 1.9891 2.1485 12 6 6.7702 1.5932 4.2814 13 6 6.6660 2.6551 5.4037 14 6 7.3291 3.9185 4.7665 15 6 6.8836 3.8587 3.2919 16 6 7.9653 4.3896 2.3491 17 7 8.2391 5.7945 2.6617 18 6 9.1776 6.4856 1.9430 19 1 9.7164 5.9949 1.1458 20 6 9.4374 7.8166 2.2396 21 7 10.3391 8.4810 1.5483 22 14 8.5060 8.6651 3.6187 23 1 9.2469 8.4944 4.8944 24 1 8.3765 10.1121 3.3114 25 1 7.1546 8.0633 3.7468 26 6 5.5578 4.6339 3.1393 27 6 2.2982 3.4737 -0.6209 28 6 2.2072 4.7798 -1.3670 29 7 1.6772 2.3691 -0.9306 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.3130 1.4024 1.7346 36 1 4.4286 2.1779 3.5733 37 1 4.7646 1.7044 1.8796 38 1 6.0084 0.8247 4.4122 39 1 7.7647 1.1474 4.2699 40 1 5.6232 2.8625 5.6437 41 1 7.2088 2.3326 6.2922 42 1 8.4134 3.8353 4.8407 43 1 6.9841 4.8420 5.2317 44 1 8.8766 3.8050 2.4757 45 1 7.6211 4.3073 1.3181 46 1 7.7555 6.2350 3.3779 47 1 10.5203 9.4112 1.7554 48 1 5.7386 5.6114 2.6925 49 1 5.0668 4.7438 4.1063 50 1 1.3916 5.3761 -0.9578 51 1 3.1449 5.3252 -1.2607 52 1 2.0191 4.5830 -2.4225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112537608.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:08 Heat of formation + Delta-G solvation = 37.312822 kcal Electronic energy + Delta-G solvation = -31791.502308 eV Core-core repulsion = 27791.992196 eV Total energy + Delta-G solvation = -3999.510113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.57545 -41.46910 -39.41044 -36.66459 -35.76974 -35.54915 -33.72995 -32.53330 -31.69965 -30.97618 -30.27519 -28.81216 -27.39053 -26.60756 -25.51102 -24.28622 -23.53804 -22.65734 -21.64606 -20.92482 -20.21326 -20.08436 -19.32821 -17.91034 -17.50796 -17.09274 -16.68578 -16.56138 -16.47758 -16.09799 -15.57794 -15.36268 -15.22531 -14.97234 -14.82822 -14.74787 -14.52959 -14.14613 -13.97901 -13.77386 -13.66001 -13.46854 -13.22716 -13.11485 -13.08322 -12.94443 -12.84135 -12.76136 -12.34917 -12.26935 -11.96130 -11.84103 -11.81702 -11.78391 -11.56220 -11.49503 -11.40383 -11.31727 -11.00700 -10.84444 -10.37768 -9.87363 -9.51498 -9.32006 -8.06427 -5.38780 0.49977 1.05815 1.31224 1.36982 1.38711 1.42938 2.02216 2.39387 2.44361 3.23399 3.26034 3.33903 3.49724 3.58849 3.66384 3.88323 3.93802 4.06117 4.09455 4.18440 4.19253 4.23284 4.30295 4.37634 4.43618 4.45792 4.49537 4.51317 4.68015 4.68272 4.76237 4.77987 4.79807 4.82029 4.91757 4.93894 4.96516 4.98326 5.07765 5.16180 5.24089 5.24648 5.30747 5.35251 5.39258 5.47615 5.52300 5.58973 5.71242 5.91739 6.17849 6.50123 6.66900 7.04475 7.24307 7.80812 8.00178 9.15607 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.003291 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.012195 B = 8507.001847 C =10034.813591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.351 5.351 4 C 0.116 3.884 5 C -0.313 4.313 6 C 0.601 3.399 7 O -0.593 6.593 8 N -0.620 5.620 9 C 0.094 3.906 10 C -0.091 4.091 11 H 0.085 0.915 12 C -0.102 4.102 13 C -0.114 4.114 14 C -0.115 4.115 15 C -0.075 4.075 16 C 0.177 3.823 17 N -0.752 5.752 18 C -0.233 4.233 19 H 0.052 0.948 20 C -0.063 4.063 21 N -0.984 5.984 22 Si 0.952 3.048 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.260 1.260 26 C 0.115 3.885 27 C 0.111 3.889 28 C -0.073 4.073 29 N -0.320 5.320 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.143 0.857 35 H 0.235 0.765 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.030 0.970 45 H -0.001 1.001 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.040 0.960 49 H 0.090 0.910 50 H 0.082 0.918 51 H 0.066 0.934 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.094 -27.745 6.944 35.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.129 5.129 4 C -0.037 4.037 5 C -0.328 4.328 6 C 0.393 3.607 7 O -0.474 6.474 8 N -0.352 5.352 9 C -0.027 4.027 10 C -0.111 4.111 11 H 0.103 0.897 12 C -0.140 4.140 13 C -0.151 4.151 14 C -0.153 4.153 15 C -0.077 4.077 16 C 0.051 3.949 17 N -0.397 5.397 18 C -0.364 4.364 19 H 0.070 0.930 20 C -0.255 4.255 21 N -0.634 5.634 22 Si 0.779 3.221 23 H -0.192 1.192 24 H -0.222 1.222 25 H -0.186 1.186 26 C -0.008 4.008 27 C -0.056 4.056 28 C -0.131 4.131 29 N -0.142 5.142 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.160 0.840 35 H 0.251 0.749 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.017 0.983 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.108 0.892 50 H 0.100 0.900 51 H 0.085 0.915 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.916 -27.840 5.687 35.885 hybrid contribution 0.774 2.245 0.491 2.425 sum -21.142 -25.594 6.178 33.767 Atomic orbital electron populations 1.22037 0.93458 1.04311 1.02221 1.22350 0.96500 0.74703 1.06847 1.48993 1.33249 1.11288 1.19396 1.24178 0.91610 0.92321 0.95584 1.20123 1.12571 0.95766 1.04322 1.17330 0.78559 0.86837 0.77948 1.90758 1.69736 1.20556 1.66363 1.48754 1.43843 1.10068 1.32516 1.23280 0.95634 0.82088 1.01659 1.22767 0.95463 0.92597 1.00253 0.89672 1.22328 1.03405 0.97207 0.91040 1.22718 1.01128 0.93162 0.98141 1.22630 1.00810 0.99467 0.92353 1.22231 0.92772 0.96347 0.96331 1.20653 0.95406 0.83697 0.95141 1.42659 1.46526 1.09651 1.40907 1.19013 1.12148 0.93817 1.11397 0.92986 1.25485 1.00306 0.97315 1.02359 1.69886 1.38178 1.10396 1.44975 0.85453 0.79315 0.77481 0.79881 1.19171 1.22248 1.18557 1.22450 0.90359 0.94657 0.93342 1.22574 0.93378 0.95531 0.94092 1.20217 1.03416 0.90178 0.99309 1.77074 1.24903 0.97138 1.15122 0.93407 0.87744 0.92683 0.88315 0.83953 0.74908 0.86907 0.87763 0.87562 0.90939 0.90354 0.90118 0.92268 0.92246 0.95189 0.98342 0.80132 0.93309 0.94103 0.89226 0.89956 0.91499 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.09 71.98 0.73 -0.41 16 2 C 0.11 0.69 7.21 86.38 0.62 1.32 16 3 N -0.35 -5.73 3.65 -346.31 -1.26 -6.99 16 4 C 0.12 1.85 9.80 84.28 0.83 2.68 16 5 C -0.31 -8.43 6.06 -20.15 -0.12 -8.55 16 6 C 0.60 20.43 7.89 86.67 0.68 21.12 16 7 O -0.59 -26.41 15.31 -4.03 -0.06 -26.47 16 8 N -0.62 -17.08 3.31 -811.48 -2.69 -19.77 16 9 C 0.09 1.39 5.09 86.65 0.44 1.83 16 10 C -0.09 -1.64 3.55 -9.16 -0.03 -1.67 16 11 H 0.08 1.66 7.88 -2.39 -0.02 1.64 16 12 C -0.10 -1.14 6.16 31.62 0.19 -0.94 16 13 C -0.11 -1.60 6.87 32.36 0.22 -1.38 16 14 C -0.11 -2.80 5.26 32.12 0.17 -2.63 16 15 C -0.08 -2.13 0.63 -50.68 -0.03 -2.16 16 16 C 0.18 7.20 5.16 86.38 0.45 7.64 16 17 N -0.75 -37.74 4.71 -343.45 -1.62 -39.36 16 18 C -0.23 -14.26 10.47 84.03 0.88 -13.38 16 19 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 20 C -0.06 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.98 -66.34 13.97 21.65 0.30 -66.04 16 22 Si 0.95 48.59 27.74 68.60 1.90 50.49 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 25 H -0.26 -12.47 6.52 99.48 0.65 -11.82 16 26 C 0.11 3.61 5.79 86.52 0.50 4.11 16 27 C 0.11 3.17 7.26 43.51 0.32 3.48 16 28 C -0.07 -2.04 9.84 71.24 0.70 -1.34 16 29 N -0.32 -7.95 12.33 -46.67 -0.58 -8.52 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.14 -0.32 8.06 -2.39 -0.02 -0.34 16 35 H 0.24 1.36 5.07 -2.91 -0.01 1.35 16 36 H 0.11 0.87 7.68 -2.39 -0.02 0.85 16 37 H 0.10 1.02 4.95 -2.39 -0.01 1.01 16 38 H 0.11 0.44 7.79 -2.39 -0.02 0.42 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.63 7.97 -2.39 -0.02 1.61 16 43 H 0.06 1.55 7.76 -2.38 -0.02 1.53 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.37 17.58 4.68 -92.71 -0.43 17.14 16 47 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 48 H 0.04 1.73 6.83 -2.39 -0.02 1.72 16 49 H 0.09 2.36 7.64 -2.38 -0.02 2.35 16 50 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 51 H 0.07 2.25 6.78 -2.39 -0.02 2.23 16 52 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -92.05 403.39 3.44 -88.61 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.43 Total: 21.85 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 7.01 Total: 6.21 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -5.84 Total: -140.69 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.06 Total: -26.47 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.90 Total: 50.49 kcal Total: -92.05 3.44 -88.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112537608.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.921 kcal (2) G-P(sol) polarization free energy of solvation -92.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds