Wall clock time and date at job start Wed Apr 1 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47176 * 2 1 4 4 C 1.34261 * 125.75053 * 125.30979 * 3 2 1 5 5 C 1.38039 * 107.41312 * 180.10942 * 4 3 2 6 6 C 1.47440 * 126.41133 * 179.87214 * 5 4 3 7 7 O 1.21606 * 119.99613 * 139.45722 * 6 5 4 8 8 N 1.34775 * 119.99865 * 319.45279 * 6 5 4 9 9 C 1.46926 * 120.63059 * 354.33880 * 8 6 5 10 10 C 1.53198 * 108.77209 * 233.62840 * 9 8 6 11 11 C 1.53048 * 109.30877 * 305.36365 * 10 9 8 12 12 C 1.53037 * 109.53874 * 61.36845 * 11 10 9 13 13 H 1.09000 * 109.52326 * 58.59545 * 12 11 10 14 14 C 1.52994 * 109.49793 * 178.67874 * 12 11 10 15 15 N 1.46497 * 109.47229 * 184.83957 * 14 12 11 16 16 C 1.36940 * 120.00156 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99898 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99703 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00024 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47067 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46827 * 299.99957 * 20 18 16 23 23 H 1.48504 * 109.47327 * 59.99707 * 20 18 16 24 24 C 1.46923 * 120.62862 * 174.35401 * 8 6 5 25 25 C 1.41290 * 107.17211 * 359.60914 * 5 4 3 26 26 C 1.50703 * 125.98708 * 180.23879 * 25 5 4 27 27 C 1.52995 * 117.49833 * 188.62143 * 26 25 5 28 28 C 1.53002 * 117.49616 * 119.99862 * 26 25 5 29 29 N 1.30444 * 108.02050 * 0.23847 * 25 5 4 30 30 H 1.09001 * 109.46970 * 59.99759 * 1 2 3 31 31 H 1.08996 * 109.47451 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47021 * 299.99972 * 1 2 3 33 33 H 1.09006 * 109.46777 * 240.00451 * 2 1 3 34 34 H 1.08997 * 109.47385 * 120.00535 * 2 1 3 35 35 H 1.07999 * 126.28976 * 359.96219 * 4 3 2 36 36 H 1.09000 * 109.58606 * 353.41348 * 9 8 6 37 37 H 1.08999 * 109.58852 * 113.69956 * 9 8 6 38 38 H 1.08997 * 109.49601 * 65.31503 * 10 9 8 39 39 H 1.08996 * 109.49358 * 185.38148 * 10 9 8 40 40 H 1.08996 * 109.45766 * 301.34344 * 11 10 9 41 41 H 1.09003 * 109.45401 * 181.39040 * 11 10 9 42 42 H 1.09005 * 109.46951 * 64.83373 * 14 12 11 43 43 H 1.09001 * 109.47617 * 304.83894 * 14 12 11 44 44 H 0.96999 * 120.00053 * 359.97438 * 15 14 12 45 45 H 0.96992 * 120.00539 * 0.02562 * 19 18 16 46 46 H 1.09003 * 109.58497 * 6.58815 * 24 8 6 47 47 H 1.08999 * 109.70627 * 246.22788 * 24 8 6 48 48 H 1.09003 * 115.55083 * 334.33843 * 26 25 5 49 49 H 1.09002 * 117.49732 * 0.02562 * 27 26 25 50 50 H 1.08995 * 117.49881 * 145.02194 * 27 26 25 51 51 H 1.09002 * 117.49954 * 214.97640 * 28 26 25 52 52 H 1.08998 * 117.49856 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8736 1.9109 0.8892 5 6 3.0718 3.2306 0.5362 6 6 3.9341 4.2028 1.2327 7 8 4.6148 4.9803 0.5917 8 7 3.9679 4.2297 2.5798 9 6 3.0616 3.3838 3.3684 10 6 2.3011 4.2683 4.3616 11 6 3.3033 5.0667 5.1985 12 6 4.1302 5.9709 4.2816 13 1 3.4664 6.6419 3.7366 14 6 5.1091 6.7928 5.1226 15 7 5.8187 7.7400 4.2593 16 6 6.7524 8.5870 4.7942 17 1 6.9653 8.5569 5.8526 18 6 7.4253 9.4841 3.9761 19 7 7.1661 9.5203 2.6861 20 14 8.6994 10.6389 4.7056 21 1 9.2697 11.4896 3.6304 22 1 8.0573 11.5002 5.7308 23 1 9.7845 9.8445 5.3356 24 6 4.9114 5.1058 3.2875 25 6 2.2984 3.4736 -0.6209 26 6 2.2071 4.7799 -1.3668 27 6 1.1585 4.8885 -2.4756 28 6 2.6426 4.7878 -2.8335 29 7 1.6772 2.3691 -0.9304 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3220 1.3991 1.7279 36 1 2.3537 2.8882 2.7040 37 1 3.6395 2.6354 3.9105 38 1 1.6541 4.9549 3.8158 39 1 1.6963 3.6419 5.0172 40 1 3.9658 4.3796 5.7247 41 1 2.7654 5.6785 5.9228 42 1 5.8280 6.1258 5.5985 43 1 4.5595 7.3404 5.8882 44 1 5.6278 7.7667 3.3086 45 1 6.5048 8.9205 2.3072 46 1 5.4240 5.7464 2.5698 47 1 5.6421 4.5012 3.8248 48 1 2.4104 5.6735 -0.7766 49 1 0.5343 4.0152 -2.6653 50 1 0.6715 5.8536 -2.6150 51 1 3.1320 5.6868 -3.2083 52 1 2.9956 3.8484 -3.2588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266791325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:05 Heat of formation + Delta-G solvation = 76.071775 kcal Electronic energy + Delta-G solvation = -31167.056744 eV Core-core repulsion = 27169.227346 eV Total energy + Delta-G solvation = -3997.829398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75962 -39.70171 -37.52836 -37.15228 -35.06873 -34.53025 -33.03229 -31.71240 -30.76741 -30.09447 -29.23577 -25.63907 -25.27860 -24.97116 -23.09101 -22.85532 -22.42551 -22.02917 -21.39581 -20.29735 -19.61923 -18.80976 -17.35578 -17.12650 -16.66871 -16.13578 -15.74768 -15.32074 -15.17343 -14.84343 -14.64506 -14.39681 -14.28535 -14.11203 -13.72399 -13.52629 -13.42616 -13.04846 -12.94442 -12.86844 -12.57351 -12.43728 -12.37890 -12.05545 -11.89107 -11.65137 -11.56007 -11.12838 -11.10919 -10.90699 -10.74911 -10.64050 -10.59821 -10.42094 -10.37723 -10.18290 -9.88623 -9.67196 -9.33007 -9.06442 -8.80371 -8.73643 -8.41598 -6.90220 -5.99211 -2.99346 1.37166 2.01789 2.05734 3.04133 3.31539 3.57344 3.61752 3.79508 3.91475 3.97490 4.27790 4.39363 4.47515 4.64636 4.67375 4.71740 4.78927 4.80381 4.90009 4.94400 5.00399 5.05972 5.12532 5.21110 5.23145 5.30420 5.34052 5.45840 5.52594 5.59722 5.62762 5.64062 5.71480 5.78648 5.80346 5.82609 5.95628 6.06628 6.08817 6.09387 6.10306 6.13911 6.27740 6.38027 6.50367 6.56137 6.69678 6.76620 6.86303 7.39464 7.59594 7.89445 8.41972 8.86808 9.34183 10.20373 10.35342 11.49245 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.002710 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.789946 B =10329.018234 C =11804.230624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.360 5.360 4 C 0.090 3.910 5 C -0.269 4.269 6 C 0.589 3.411 7 O -0.525 6.525 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.132 4.132 11 C -0.111 4.111 12 C -0.108 4.108 13 H 0.073 0.927 14 C 0.167 3.833 15 N -0.744 5.744 16 C -0.334 4.334 17 H 0.063 0.937 18 C -0.046 4.046 19 N -0.942 5.942 20 Si 1.080 2.920 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.296 1.296 24 C 0.123 3.877 25 C 0.159 3.841 26 C -0.081 4.081 27 C -0.168 4.168 28 C -0.154 4.154 29 N -0.295 5.295 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.182 0.818 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.368 0.632 45 H 0.257 0.743 46 H 0.100 0.900 47 H 0.065 0.935 48 H 0.127 0.873 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.103 0.897 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.765 -23.418 -3.538 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.139 5.139 4 C -0.060 4.060 5 C -0.284 4.284 6 C 0.376 3.624 7 O -0.400 6.400 8 N -0.342 5.342 9 C -0.020 4.020 10 C -0.171 4.171 11 C -0.149 4.149 12 C -0.128 4.128 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.390 5.390 16 C -0.465 4.465 17 H 0.081 0.919 18 C -0.244 4.244 19 N -0.587 5.587 20 Si 0.911 3.089 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.223 1.223 24 C 0.002 3.998 25 C -0.008 4.008 26 C -0.101 4.101 27 C -0.205 4.205 28 C -0.192 4.192 29 N -0.116 5.116 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.199 0.801 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.202 0.798 45 H 0.069 0.931 46 H 0.118 0.882 47 H 0.083 0.917 48 H 0.145 0.855 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.121 0.879 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.112 -22.534 -4.808 28.115 hybrid contribution -0.573 -1.092 1.022 1.602 sum -16.685 -23.626 -3.786 29.170 Atomic orbital electron populations 1.22050 0.93391 1.03004 1.03847 1.21793 0.96424 0.76965 1.04103 1.48452 1.34298 1.10382 1.20800 1.23060 0.93698 0.93892 0.95343 1.20161 1.10859 0.94758 1.02607 1.17350 0.81077 0.82643 0.81314 1.90841 1.42966 1.40731 1.65485 1.48011 1.38151 1.43058 1.05023 1.21874 0.92784 0.93158 0.94184 1.21898 0.98178 0.99092 0.97909 1.21507 0.97487 0.98273 0.97650 1.21702 0.97747 0.96721 0.96621 0.90899 1.20559 0.92162 0.90784 0.92633 1.42422 1.47251 1.42645 1.06703 1.19997 1.16635 1.15386 0.94486 0.91895 1.25771 1.02611 1.00457 0.95514 1.70846 1.35844 1.40756 1.11265 0.83244 0.75375 0.75766 0.74472 1.21052 1.22368 1.22344 1.21668 0.90409 0.92417 0.95333 1.21356 0.93270 0.93402 0.92738 1.20329 1.06107 0.92994 0.90686 1.23004 0.92224 1.03489 1.01790 1.22945 0.97225 1.03689 0.95357 1.77039 1.24675 0.96595 1.13283 0.90927 0.90544 0.91907 0.89460 0.88361 0.80090 0.89880 0.91677 0.91532 0.91048 0.91779 0.91573 0.96243 0.96089 0.79781 0.93147 0.88194 0.91654 0.85472 0.88212 0.88276 0.87856 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.09 37.16 0.37 -0.41 16 2 C 0.13 0.65 7.21 -4.04 -0.03 0.62 16 3 N -0.36 -3.38 3.65 -60.81 -0.22 -3.60 16 4 C 0.09 0.88 9.06 -16.56 -0.15 0.73 16 5 C -0.27 -3.65 5.21 -105.06 -0.55 -4.20 16 6 C 0.59 9.73 7.45 -12.51 -0.09 9.64 16 7 O -0.52 -11.04 16.00 5.27 0.08 -10.95 16 8 N -0.61 -8.82 2.97 -174.03 -0.52 -9.33 16 9 C 0.10 1.05 5.48 -3.71 -0.02 1.03 16 10 C -0.13 -1.36 6.08 -26.60 -0.16 -1.52 16 11 C -0.11 -1.38 5.17 -26.69 -0.14 -1.52 16 12 C -0.11 -1.81 2.38 -90.50 -0.21 -2.02 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.17 3.46 5.65 -4.05 -0.02 3.43 16 15 N -0.74 -19.62 5.37 -59.91 -0.32 -19.95 16 16 C -0.33 -9.81 9.99 -15.06 -0.15 -9.96 16 17 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 19 N -0.94 -30.57 13.70 55.49 0.76 -29.81 16 20 Si 1.08 26.88 29.92 -169.99 -5.09 21.79 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.12 2.11 5.53 -3.71 -0.02 2.09 16 25 C 0.16 2.19 6.79 -82.02 -0.56 1.63 16 26 C -0.08 -1.09 5.74 -91.77 -0.53 -1.62 16 27 C -0.17 -1.81 10.14 -26.73 -0.27 -2.08 16 28 C -0.15 -1.82 10.23 -26.73 -0.27 -2.10 16 29 N -0.29 -3.63 11.92 33.90 0.40 -3.23 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.23 8.06 -51.93 -0.42 -0.19 16 35 H 0.18 1.13 7.35 -52.49 -0.39 0.75 16 36 H 0.08 0.74 4.82 -51.93 -0.25 0.49 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.37 10.15 5.72 -40.82 -0.23 9.91 16 45 H 0.26 8.35 6.77 -40.82 -0.28 8.07 16 46 H 0.10 2.13 6.20 -51.93 -0.32 1.81 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.13 1.90 8.01 -51.93 -0.42 1.48 16 49 H 0.10 1.06 7.90 -51.93 -0.41 0.65 16 50 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 52 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 415.47 15.07 6.26 6.26 Total: -1.00 -37.46 415.47 -10.22 -47.68 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.68 Total: 8.87 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.90 Total: -7.73 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: 0.10 Total: -65.92 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -5.09 Total: 21.79 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.46 -10.22 -47.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266791325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.752 kcal (2) G-P(sol) polarization free energy of solvation -37.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds