Wall clock time and date at job start Wed Apr 1 2020 05:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47506 * 2 1 4 4 C 1.36889 * 126.39577 * 265.82142 * 3 2 1 5 5 C 1.34666 * 106.81574 * 179.97438 * 4 3 2 6 6 N 1.34134 * 108.02336 * 359.78013 * 5 4 3 7 7 C 1.30502 * 109.25343 * 0.36612 * 6 5 4 8 8 C 1.50700 * 125.65018 * 179.89345 * 7 6 5 9 9 N 1.46902 * 109.47009 * 93.54713 * 8 7 6 10 10 C 1.46857 * 111.00022 * 184.25809 * 9 8 7 11 11 C 1.54061 * 108.85495 * 181.70983 * 10 9 8 12 12 H 1.08992 * 113.19275 * 169.31473 * 11 10 9 13 13 C 1.55571 * 106.10555 * 294.29629 * 11 10 9 14 14 C 1.55311 * 99.91581 * 72.73898 * 13 11 10 15 15 H 1.08998 * 112.68985 * 164.05138 * 14 13 11 16 16 C 1.47570 * 111.79585 * 311.31756 * 9 8 7 17 17 N 1.47880 * 104.03262 * 41.71346 * 14 13 11 18 18 C 1.34783 * 125.91797 * 152.72404 * 17 14 13 19 19 O 1.21275 * 120.00259 * 0.02562 * 18 17 14 20 20 C 1.50699 * 119.99451 * 179.97438 * 18 17 14 21 21 C 1.53007 * 109.47038 * 179.97438 * 20 18 17 22 22 C 1.50699 * 109.47038 * 179.97438 * 21 20 18 23 23 H 1.07991 * 120.00135 * 359.72982 * 22 21 20 24 24 C 1.37880 * 119.99549 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00265 * 359.72711 * 24 22 21 26 26 Si 1.86804 * 119.99941 * 179.72801 * 24 22 21 27 27 H 1.48500 * 109.47129 * 59.99901 * 26 24 22 28 28 H 1.48495 * 109.47143 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.46836 * 300.00042 * 26 24 22 30 30 C 1.47122 * 108.15780 * 332.98974 * 17 14 13 31 31 H 1.09005 * 109.46921 * 59.99635 * 1 2 3 32 32 H 1.08991 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46984 * 300.00411 * 1 2 3 34 34 H 1.09002 * 109.46984 * 239.99589 * 2 1 3 35 35 H 1.09005 * 109.46475 * 120.00071 * 2 1 3 36 36 H 1.07998 * 126.59119 * 359.94278 * 4 3 2 37 37 H 1.07996 * 125.98750 * 179.97438 * 5 4 3 38 38 H 1.09007 * 109.46784 * 333.55257 * 8 7 6 39 39 H 1.09001 * 109.47195 * 213.54965 * 8 7 6 40 40 H 1.08994 * 109.57748 * 61.89172 * 10 9 8 41 41 H 1.09005 * 109.67532 * 301.58229 * 10 9 8 42 42 H 1.08997 * 111.31546 * 315.06414 * 13 11 10 43 43 H 1.08995 * 111.35908 * 190.42073 * 13 11 10 44 44 H 1.08998 * 110.35139 * 58.68924 * 16 9 8 45 45 H 1.08993 * 108.02606 * 298.92541 * 16 9 8 46 46 H 1.09003 * 109.47364 * 60.00370 * 20 18 17 47 47 H 1.09002 * 109.47588 * 300.00281 * 20 18 17 48 48 H 1.09003 * 109.46697 * 60.00016 * 21 20 18 49 49 H 1.09002 * 109.47204 * 300.00570 * 21 20 18 50 50 H 0.96994 * 120.00083 * 180.02562 * 25 24 22 51 51 H 1.09004 * 110.00330 * 120.21359 * 30 17 14 52 52 H 1.09003 * 110.00214 * 241.56284 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3649 2.1201 -1.0989 5 6 2.7564 3.3275 -0.6489 6 7 2.6472 3.3275 0.6880 7 6 2.2103 2.1633 1.0840 8 6 1.9561 1.7605 2.5138 9 7 0.5467 2.0052 2.8482 10 6 0.2844 1.7189 4.2645 11 6 -1.2118 1.9496 4.5503 12 1 -1.5234 1.5834 5.5285 13 6 -1.4588 3.4730 4.3537 14 6 -1.3682 3.5609 2.8057 15 1 -1.7812 4.4899 2.4125 16 6 0.1149 3.3577 2.4459 17 7 -2.1027 2.3668 2.3351 18 6 -2.7409 2.2456 1.1542 19 8 -2.7439 3.1696 0.3688 20 6 -3.4499 0.9612 0.8094 21 6 -4.0874 1.0867 -0.5759 22 6 -4.7958 -0.1979 -0.9210 23 1 -4.7881 -1.0228 -0.2241 24 6 -5.4487 -0.3220 -2.1291 25 7 -5.4577 0.6825 -2.9779 26 14 -6.3204 -1.9169 -2.5602 27 1 -7.3756 -2.1924 -1.5522 28 1 -6.9402 -1.7946 -3.9041 29 1 -5.3390 -3.0312 -2.5666 30 6 -2.0213 1.3364 3.3821 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8901 36 1 2.3313 1.7969 -2.1289 37 1 3.0955 4.1524 -1.2579 38 1 2.5935 2.3471 3.1754 39 1 2.1804 0.7011 2.6382 40 1 0.8821 2.3834 4.8882 41 1 0.5424 0.6827 4.4833 42 1 -0.6783 4.0657 4.8307 43 1 -2.4468 3.7641 4.7099 44 1 0.2518 3.4960 1.3734 45 1 0.7237 4.0813 2.9879 46 1 -4.2257 0.7644 1.5494 47 1 -2.7333 0.1399 0.8070 48 1 -3.3119 1.2837 -1.3162 49 1 -4.8041 1.9080 -0.5731 50 1 -5.9173 0.5954 -3.8276 51 1 -3.0224 1.0684 3.7201 52 1 -1.5085 0.4544 2.9982 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271252531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:24 Heat of formation + Delta-G solvation = 41.342740 kcal Electronic energy + Delta-G solvation = -32916.245364 eV Core-core repulsion = 28916.910002 eV Total energy + Delta-G solvation = -3999.335362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13987 -40.68423 -38.11075 -35.50080 -34.88250 -33.43675 -32.18303 -31.38946 -30.40001 -30.05139 -29.63513 -26.42155 -26.02140 -25.53910 -23.67423 -22.94897 -22.61398 -21.32610 -20.97940 -19.61021 -19.45116 -18.48029 -17.16298 -17.02048 -16.43303 -15.78404 -15.55652 -15.01241 -14.95431 -14.65454 -14.46507 -14.38881 -14.33680 -13.84584 -13.61845 -13.50987 -13.39181 -13.11393 -12.73590 -12.61307 -12.46626 -12.32190 -12.27069 -12.07509 -11.99656 -11.79758 -11.71714 -11.22541 -11.11787 -11.01561 -10.90751 -10.61241 -10.54329 -10.51778 -9.93724 -9.90213 -9.60689 -9.51647 -9.13154 -8.91669 -8.55047 -8.31680 -8.26875 -8.12240 -5.94486 -3.98828 2.04184 2.82892 3.07899 3.33485 3.35194 3.38470 3.39441 3.42144 3.82078 4.24065 4.38858 4.46823 4.49862 4.59366 4.62102 4.73968 4.99186 5.03536 5.10939 5.14613 5.19023 5.24453 5.25466 5.31077 5.40126 5.44894 5.48786 5.52855 5.60817 5.68848 5.76694 5.81205 5.83949 5.85552 5.88834 5.93561 6.00907 6.13401 6.29862 6.31337 6.37660 6.48799 6.64229 6.78465 6.85591 6.90681 6.99912 7.23436 7.76126 7.89882 8.05792 8.10552 8.13378 8.41281 8.89849 9.10192 9.64360 11.16360 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.003844 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.959661 B = 7281.835299 C = 8688.737657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.439 5.439 4 C -0.049 4.049 5 C -0.032 4.032 6 N -0.491 5.491 7 C 0.206 3.794 8 C 0.150 3.850 9 N -0.540 5.540 10 C 0.066 3.934 11 C -0.103 4.103 12 H 0.105 0.895 13 C -0.134 4.134 14 C 0.134 3.866 15 H 0.101 0.899 16 C 0.061 3.939 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.538 6.538 20 C -0.122 4.122 21 C 0.040 3.960 22 C -0.525 4.525 23 H 0.054 0.946 24 C 0.059 3.941 25 N -0.889 5.889 26 Si 0.891 3.109 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.277 1.277 30 C 0.125 3.875 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.261 0.739 51 H 0.060 0.940 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.954 -0.435 16.188 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.121 5.121 4 C -0.183 4.183 5 C -0.180 4.180 6 N -0.211 5.211 7 C -0.056 4.056 8 C 0.021 3.979 9 N -0.266 5.266 10 C -0.061 4.061 11 C -0.122 4.122 12 H 0.123 0.877 13 C -0.172 4.172 14 C 0.029 3.971 15 H 0.119 0.881 16 C -0.067 4.067 17 N -0.346 5.346 18 C 0.320 3.680 19 O -0.413 6.413 20 C -0.162 4.162 21 C 0.003 3.997 22 C -0.563 4.563 23 H 0.072 0.928 24 C -0.142 4.142 25 N -0.528 5.528 26 Si 0.718 3.282 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.203 1.203 30 C 0.001 3.999 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.189 0.811 37 H 0.184 0.816 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.039 0.961 49 H 0.040 0.960 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.702 0.280 15.722 22.940 hybrid contribution -0.198 -1.016 -0.608 1.200 sum 16.505 -0.737 15.115 22.392 Atomic orbital electron populations 1.22247 0.92438 1.03523 1.05005 1.21875 0.96977 0.79238 1.03581 1.45412 1.47270 1.12953 1.06513 1.22736 1.08561 0.94189 0.92813 1.22200 1.07371 0.97288 0.91184 1.70205 1.19549 1.18993 1.12304 1.22786 1.04327 0.87842 0.90688 1.20207 0.89224 1.00961 0.87500 1.61189 1.17453 1.29185 1.18801 1.22266 0.95493 1.01091 0.87295 1.22780 0.94687 0.95987 0.98747 0.87657 1.23158 1.02545 0.96012 0.95523 1.22264 0.90785 0.90968 0.93056 0.88097 1.22629 0.94675 0.87422 1.01951 1.48635 1.53828 1.14712 1.17465 1.21168 0.77307 0.90801 0.78746 1.90671 1.60781 1.41901 1.47989 1.21826 0.99013 0.92558 1.02818 1.18863 0.95679 0.96915 0.88264 1.21167 1.33481 0.99473 1.02196 0.92780 1.25009 0.96463 0.96310 0.96467 1.69989 1.43097 1.30789 1.08929 0.86693 0.79936 0.83973 0.77564 1.20260 1.21308 1.20315 1.21839 0.98849 0.91911 0.87307 0.91638 0.90668 0.89768 0.89505 0.89547 0.81065 0.81583 0.92056 0.89524 0.94379 0.90254 0.90269 0.90532 0.89769 0.94314 0.90756 0.90562 0.96067 0.96036 0.92943 0.92195 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.03 37.16 0.37 -1.93 16 2 C 0.11 1.09 6.62 -4.04 -0.03 1.07 16 3 N -0.44 -5.54 2.75 -113.90 -0.31 -5.86 16 4 C -0.05 -0.63 11.58 -16.56 -0.19 -0.82 16 5 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 6 N -0.49 -7.34 10.70 -10.82 -0.12 -7.45 16 7 C 0.21 2.70 5.75 -155.41 -0.89 1.81 16 8 C 0.15 1.52 5.49 -4.97 -0.03 1.50 16 9 N -0.54 -5.70 3.21 -234.21 -0.75 -6.46 16 10 C 0.07 0.51 5.01 -3.29 -0.02 0.50 16 11 C -0.10 -0.83 4.33 -87.75 -0.38 -1.21 16 12 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.13 -1.25 6.20 -24.14 -0.15 -1.40 16 14 C 0.13 1.79 4.05 -65.44 -0.27 1.52 16 15 H 0.10 1.53 8.02 -51.93 -0.42 1.12 16 16 C 0.06 0.81 4.72 -2.95 -0.01 0.79 16 17 N -0.61 -9.24 2.76 -161.52 -0.45 -9.68 16 18 C 0.53 10.68 7.86 -10.98 -0.09 10.59 16 19 O -0.54 -13.34 16.24 5.56 0.09 -13.25 16 20 C -0.12 -2.55 4.85 -27.88 -0.14 -2.68 16 21 C 0.04 1.09 4.26 -27.88 -0.12 0.98 16 22 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 23 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 24 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 26 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 C 0.12 1.40 5.47 -2.76 -0.02 1.38 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.22 7.60 -51.93 -0.39 0.82 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.71 7.26 -51.93 -0.38 0.33 16 36 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.71 7.27 -51.93 -0.38 0.33 16 40 H 0.04 0.28 7.98 -51.93 -0.41 -0.14 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.64 7.78 -51.93 -0.40 0.24 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.46 6.57 -51.93 -0.34 1.11 16 45 H 0.04 0.49 8.02 -51.93 -0.42 0.07 16 46 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.08 1.46 7.94 -51.93 -0.41 1.05 16 48 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 49 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.07 0.83 7.76 -51.93 -0.40 0.42 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -35.96 410.29 -11.20 -47.15 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.99 Total: 1.62 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.57 Total: -2.08 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.89 Total: -56.16 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.96 -11.20 -47.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271252531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.495 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds