Wall clock time and date at job start Wed Apr 1 2020 04:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47191 * 2 1 4 4 N 1.28441 * 125.18998 * 267.17930 * 3 2 1 5 5 C 1.30866 * 110.92773 * 180.27977 * 4 3 2 6 6 C 1.50697 * 126.07344 * 179.68303 * 5 4 3 7 7 C 1.53001 * 117.50037 * 163.66190 * 6 5 4 8 8 C 1.53001 * 117.50140 * 95.03363 * 6 5 4 9 9 C 1.39676 * 107.85870 * 359.71509 * 5 4 3 10 10 C 1.36600 * 125.19186 * 86.96603 * 3 2 1 11 11 C 1.47168 * 126.88025 * 0.02562 * 10 3 2 12 12 O 1.21623 * 119.99987 * 353.26383 * 11 10 3 13 13 N 1.34775 * 119.99524 * 173.25523 * 11 10 3 14 14 C 1.47421 * 125.65161 * 354.69526 * 13 11 10 15 15 C 1.54916 * 104.83500 * 204.08684 * 14 13 11 16 16 H 1.08996 * 111.00694 * 204.91994 * 15 14 13 17 17 C 1.53000 * 111.00034 * 81.06170 * 15 14 13 18 18 C 1.55160 * 101.58001 * 322.99302 * 15 14 13 19 19 H 1.09008 * 110.86971 * 277.06684 * 18 15 14 20 20 C 1.52999 * 110.72232 * 153.86244 * 18 15 14 21 21 N 1.46499 * 109.47240 * 180.02562 * 20 18 15 22 22 C 1.36935 * 119.99875 * 179.72562 * 21 20 18 23 23 H 1.08004 * 119.99998 * 0.27067 * 22 21 20 24 24 C 1.38812 * 119.99992 * 180.27598 * 22 21 20 25 25 N 1.31616 * 119.99840 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00086 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47078 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47273 * 119.99867 * 26 24 22 29 29 H 1.48507 * 109.47157 * 240.00196 * 26 24 22 30 30 C 1.47026 * 125.64527 * 174.64734 * 13 11 10 31 31 H 1.08999 * 109.47126 * 295.27429 * 1 2 3 32 32 H 1.08994 * 109.47395 * 55.28140 * 1 2 3 33 33 H 1.09003 * 109.47065 * 175.27951 * 1 2 3 34 34 H 1.08997 * 109.47196 * 240.00013 * 2 1 3 35 35 H 1.09004 * 109.46965 * 120.00055 * 2 1 3 36 36 H 1.09002 * 115.54327 * 309.37212 * 6 5 4 37 37 H 1.08996 * 117.49830 * 359.97438 * 7 6 5 38 38 H 1.09001 * 117.49617 * 145.01818 * 7 6 5 39 39 H 1.08990 * 117.50244 * 214.97748 * 8 6 5 40 40 H 1.09003 * 117.49698 * 0.02562 * 8 6 5 41 41 H 1.08000 * 127.31696 * 179.97438 * 9 5 4 42 42 H 1.09000 * 110.37068 * 322.92636 * 14 13 11 43 43 H 1.08999 * 110.36584 * 85.14132 * 14 13 11 44 44 H 1.09002 * 109.47441 * 307.80906 * 17 15 14 45 45 H 1.08996 * 109.47189 * 67.81210 * 17 15 14 46 46 H 1.09000 * 109.47059 * 187.80480 * 17 15 14 47 47 H 1.08999 * 109.47175 * 60.02110 * 20 18 15 48 48 H 1.08997 * 109.46943 * 300.02396 * 20 18 15 49 49 H 0.97000 * 120.00014 * 0.02562 * 21 20 18 50 50 H 0.97008 * 119.99786 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.88391 * 59.56122 * 30 13 11 52 52 H 1.09006 * 110.01336 * 298.47058 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3138 2.0618 -1.0484 5 6 2.7272 3.2609 -0.7261 6 6 3.1667 4.3359 -1.6864 7 6 3.2463 5.7685 -1.1550 8 6 2.1236 5.3699 -2.1150 9 6 2.6896 3.3672 0.6661 10 6 2.2251 2.1431 1.1148 11 6 2.0047 1.7405 2.5131 12 8 1.4818 0.6712 2.7628 13 7 2.3824 2.5568 3.5167 14 6 3.1221 3.8227 3.3626 15 6 3.8292 4.0372 4.7242 16 1 4.0338 5.0939 4.8960 17 6 5.1139 3.2108 4.8111 18 6 2.7601 3.5092 5.7170 19 1 2.0164 4.2768 5.9313 20 6 3.4165 3.0184 7.0090 21 7 2.3844 2.5262 7.9247 22 6 2.7376 2.0285 9.1505 23 1 3.7767 2.0027 9.4439 24 6 1.7602 1.5568 10.0160 25 7 0.4939 1.5885 9.6586 26 14 2.2419 0.8784 11.6884 27 1 3.7165 0.9538 11.8471 28 1 1.5873 1.6786 12.7545 29 1 1.8051 -0.5371 11.7930 30 6 2.1241 2.3328 4.9467 31 1 -0.3633 0.4388 0.9293 32 1 -0.3634 0.5853 -0.8446 33 1 -0.3633 -1.0242 -0.0846 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.9069 4.0313 -2.4263 37 1 2.9804 5.9334 -0.1109 38 1 4.0392 6.4066 -1.5451 39 1 2.1778 5.7459 -3.1366 40 1 1.1195 5.2728 -1.7021 41 1 2.9648 4.2226 1.2651 42 1 3.8574 3.7375 2.5626 43 1 2.4331 4.6422 3.1579 44 1 4.8943 2.1712 4.5679 45 1 5.8461 3.6023 4.1050 46 1 5.5164 3.2702 5.8223 47 1 3.9558 3.8415 7.4778 48 1 4.1128 2.2120 6.7791 49 1 1.4512 2.5490 7.6611 50 1 -0.1892 1.2586 10.2633 51 1 2.5785 1.3938 5.2628 52 1 1.0503 2.3056 5.1321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271628903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:28 Heat of formation + Delta-G solvation = 86.332713 kcal Electronic energy + Delta-G solvation = -31110.234446 eV Core-core repulsion = 27112.849995 eV Total energy + Delta-G solvation = -3997.384451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.79281 -40.09061 -38.05162 -37.43281 -34.90734 -34.31245 -32.90832 -31.33742 -31.05116 -29.86574 -28.85983 -26.97325 -25.63665 -24.74414 -24.00642 -23.02363 -22.57389 -22.05795 -21.30326 -20.67917 -19.27170 -18.90496 -17.54565 -16.83175 -16.68713 -16.40024 -16.02686 -15.81740 -15.12217 -14.90900 -14.77011 -14.56442 -14.29815 -13.93112 -13.78618 -13.37861 -13.20040 -13.13421 -12.83878 -12.64365 -12.36397 -12.28164 -12.23309 -12.03769 -11.89438 -11.80059 -11.57634 -11.47521 -11.26009 -11.03329 -10.92033 -10.85872 -10.60836 -10.49842 -10.40699 -10.31920 -10.04916 -9.95059 -9.68971 -9.25373 -9.01282 -8.88782 -8.59695 -6.93364 -5.76964 -3.06039 1.15049 2.14449 2.29315 2.98122 3.12120 3.43380 3.48818 3.51192 3.54327 4.07156 4.23530 4.44911 4.52761 4.58100 4.61413 4.67153 4.77398 4.79910 4.89281 4.97254 5.02648 5.05925 5.21652 5.26406 5.32813 5.37209 5.40582 5.43041 5.48002 5.52972 5.58958 5.59370 5.66073 5.76161 5.80940 5.82057 5.86521 5.91271 5.97165 6.01523 6.13819 6.22495 6.25884 6.33003 6.35445 6.42939 6.58026 6.66628 6.81204 7.41862 7.69832 7.88492 8.06457 8.41434 9.52857 10.09624 10.43741 11.45842 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.002486 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.506086 B =11260.280670 C =12486.654906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.253 5.253 4 N -0.271 5.271 5 C 0.050 3.950 6 C -0.072 4.072 7 C -0.166 4.166 8 C -0.168 4.168 9 C -0.194 4.194 10 C -0.025 4.025 11 C 0.599 3.401 12 O -0.537 6.537 13 N -0.597 5.597 14 C 0.092 3.908 15 C -0.098 4.098 16 H 0.093 0.907 17 C -0.144 4.144 18 C -0.101 4.101 19 H 0.087 0.913 20 C 0.163 3.837 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.121 3.879 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.168 0.832 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.024 0.976 48 H 0.026 0.974 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 7.231 -24.859 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 N -0.041 5.041 4 N -0.104 5.104 5 C -0.106 4.106 6 C -0.092 4.092 7 C -0.204 4.204 8 C -0.206 4.206 9 C -0.223 4.223 10 C -0.153 4.153 11 C 0.386 3.614 12 O -0.414 6.414 13 N -0.330 5.330 14 C -0.031 4.031 15 C -0.117 4.117 16 H 0.111 0.889 17 C -0.201 4.201 18 C -0.121 4.121 19 H 0.105 0.895 20 C 0.036 3.964 21 N -0.378 5.378 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.001 4.001 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.185 0.815 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.044 0.956 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.530 5.650 -25.522 26.719 hybrid contribution -0.084 0.079 1.543 1.548 sum 5.446 5.730 -23.979 25.248 Atomic orbital electron populations 1.22090 0.93287 1.03488 1.03347 1.22140 0.96390 0.76309 1.05478 1.45794 1.44475 1.12260 1.01553 1.73056 1.17639 1.06188 1.13534 1.20986 1.04315 0.92633 0.92633 1.20005 1.02512 0.86961 0.99687 1.23006 1.01413 0.95839 1.00122 1.22991 0.95266 1.02169 1.00137 1.22505 1.07075 0.97951 0.94721 1.21354 1.10594 0.93597 0.89772 1.16473 0.79090 0.83487 0.82352 1.90819 1.44511 1.21862 1.84253 1.48126 1.55376 1.22533 1.07007 1.22866 0.95224 0.86003 0.98992 1.22363 0.95304 1.00812 0.93239 0.88870 1.21792 0.95808 1.00054 1.02478 1.22509 0.97283 0.96873 0.95390 0.89501 1.20716 0.92048 0.96196 0.87485 1.42385 1.04919 1.74957 1.15526 1.19242 0.92819 1.32967 0.92033 0.91133 1.24745 0.95310 1.02102 0.98802 1.69668 0.99069 1.52660 1.36647 0.86130 0.77466 0.78427 0.84234 1.20565 1.21875 1.21874 1.22092 1.01291 0.99798 0.76897 0.91072 0.92098 0.90068 0.88419 0.86928 0.86480 0.88315 0.88046 0.88322 0.88708 0.81464 0.89613 0.90875 0.92498 0.92879 0.91230 0.95819 0.95580 0.78290 0.93541 0.90251 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.21 37.16 0.38 -1.29 16 2 C 0.12 1.26 6.35 -4.04 -0.03 1.24 16 3 N -0.25 -3.27 3.35 -57.14 -0.19 -3.46 16 4 N -0.27 -3.50 11.90 33.64 0.40 -3.10 16 5 C 0.05 0.57 6.85 -82.47 -0.57 0.01 16 6 C -0.07 -0.60 6.33 -91.77 -0.58 -1.19 16 7 C -0.17 -1.06 10.02 -26.73 -0.27 -1.32 16 8 C -0.17 -1.20 10.24 -26.73 -0.27 -1.47 16 9 C -0.19 -2.17 8.56 -38.99 -0.33 -2.51 16 10 C -0.02 -0.33 6.89 -82.06 -0.57 -0.90 16 11 C 0.60 9.15 7.81 -12.64 -0.10 9.05 16 12 O -0.54 -9.66 14.72 5.26 0.08 -9.58 16 13 N -0.60 -8.33 3.31 -171.87 -0.57 -8.90 16 14 C 0.09 0.95 4.59 -2.53 -0.01 0.94 16 15 C -0.10 -1.07 3.54 -88.47 -0.31 -1.38 16 16 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.14 -1.61 8.13 37.16 0.30 -1.31 16 18 C -0.10 -1.49 2.88 -88.78 -0.26 -1.75 16 19 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 20 C 0.16 3.06 4.52 -4.04 -0.02 3.04 16 21 N -0.73 -18.03 5.45 -59.91 -0.33 -18.36 16 22 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 26 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 C 0.12 1.95 5.84 -3.06 -0.02 1.93 16 31 H 0.07 0.88 7.68 -51.93 -0.40 0.49 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.11 1.33 6.65 -51.93 -0.35 0.98 16 36 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.61 7.22 -51.93 -0.38 0.23 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.17 1.47 4.40 -52.49 -0.23 1.24 16 42 H 0.09 0.78 5.79 -51.93 -0.30 0.48 16 43 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 44 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.03 0.50 6.67 -51.93 -0.35 0.16 16 49 H 0.38 9.97 7.52 -40.82 -0.31 9.66 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.08 1.48 7.77 -51.93 -0.40 1.07 16 52 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 410.94 15.07 6.19 6.19 Total: -1.00 -33.29 410.94 -10.10 -43.39 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.49 Total: 8.03 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.89 Total: -4.15 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.04 Total: -61.27 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.29 -10.10 -43.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271628903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.719 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds