Wall clock time and date at job start Wed Apr 1 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47191 * 2 1 4 4 N 1.28441 * 125.18998 * 267.17930 * 3 2 1 5 5 C 1.30866 * 110.92773 * 180.27977 * 4 3 2 6 6 C 1.50697 * 126.07344 * 179.68303 * 5 4 3 7 7 C 1.53001 * 117.50037 * 163.66190 * 6 5 4 8 8 C 1.53001 * 117.50140 * 95.03363 * 6 5 4 9 9 C 1.39676 * 107.85870 * 359.71509 * 5 4 3 10 10 C 1.36600 * 125.19186 * 86.96603 * 3 2 1 11 11 C 1.47168 * 126.88025 * 0.02562 * 10 3 2 12 12 O 1.21623 * 119.99987 * 353.26383 * 11 10 3 13 13 N 1.34775 * 119.99524 * 173.25523 * 11 10 3 14 14 C 1.47421 * 125.65161 * 354.69526 * 13 11 10 15 15 C 1.54916 * 104.83500 * 204.08684 * 14 13 11 16 16 H 1.08996 * 111.00694 * 204.91994 * 15 14 13 17 17 C 1.53000 * 111.00034 * 81.06170 * 15 14 13 18 18 C 1.55160 * 101.58001 * 322.99302 * 15 14 13 19 19 H 1.09008 * 110.86971 * 277.06684 * 18 15 14 20 20 C 1.52999 * 110.72232 * 153.86244 * 18 15 14 21 21 N 1.46499 * 109.47240 * 180.02562 * 20 18 15 22 22 C 1.36935 * 119.99875 * 179.72562 * 21 20 18 23 23 H 1.08004 * 119.99998 * 0.27067 * 22 21 20 24 24 C 1.38812 * 119.99992 * 180.27598 * 22 21 20 25 25 N 1.31616 * 119.99840 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00086 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47078 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47273 * 119.99867 * 26 24 22 29 29 H 1.48507 * 109.47157 * 240.00196 * 26 24 22 30 30 C 1.47026 * 125.64527 * 174.64734 * 13 11 10 31 31 H 1.08999 * 109.47126 * 295.27429 * 1 2 3 32 32 H 1.08994 * 109.47395 * 55.28140 * 1 2 3 33 33 H 1.09003 * 109.47065 * 175.27951 * 1 2 3 34 34 H 1.08997 * 109.47196 * 240.00013 * 2 1 3 35 35 H 1.09004 * 109.46965 * 120.00055 * 2 1 3 36 36 H 1.09002 * 115.54327 * 309.37212 * 6 5 4 37 37 H 1.08996 * 117.49830 * 359.97438 * 7 6 5 38 38 H 1.09001 * 117.49617 * 145.01818 * 7 6 5 39 39 H 1.08990 * 117.50244 * 214.97748 * 8 6 5 40 40 H 1.09003 * 117.49698 * 0.02562 * 8 6 5 41 41 H 1.08000 * 127.31696 * 179.97438 * 9 5 4 42 42 H 1.09000 * 110.37068 * 322.92636 * 14 13 11 43 43 H 1.08999 * 110.36584 * 85.14132 * 14 13 11 44 44 H 1.09002 * 109.47441 * 307.80906 * 17 15 14 45 45 H 1.08996 * 109.47189 * 67.81210 * 17 15 14 46 46 H 1.09000 * 109.47059 * 187.80480 * 17 15 14 47 47 H 1.08999 * 109.47175 * 60.02110 * 20 18 15 48 48 H 1.08997 * 109.46943 * 300.02396 * 20 18 15 49 49 H 0.97000 * 120.00014 * 0.02562 * 21 20 18 50 50 H 0.97008 * 119.99786 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.88391 * 59.56122 * 30 13 11 52 52 H 1.09006 * 110.01336 * 298.47058 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3138 2.0618 -1.0484 5 6 2.7272 3.2609 -0.7261 6 6 3.1667 4.3359 -1.6864 7 6 3.2463 5.7685 -1.1550 8 6 2.1236 5.3699 -2.1150 9 6 2.6896 3.3672 0.6661 10 6 2.2251 2.1431 1.1148 11 6 2.0047 1.7405 2.5131 12 8 1.4818 0.6712 2.7628 13 7 2.3824 2.5568 3.5167 14 6 3.1221 3.8227 3.3626 15 6 3.8292 4.0372 4.7242 16 1 4.0338 5.0939 4.8960 17 6 5.1139 3.2108 4.8111 18 6 2.7601 3.5092 5.7170 19 1 2.0164 4.2768 5.9313 20 6 3.4165 3.0184 7.0090 21 7 2.3844 2.5262 7.9247 22 6 2.7376 2.0285 9.1505 23 1 3.7767 2.0027 9.4439 24 6 1.7602 1.5568 10.0160 25 7 0.4939 1.5885 9.6586 26 14 2.2419 0.8784 11.6884 27 1 3.7165 0.9538 11.8471 28 1 1.5873 1.6786 12.7545 29 1 1.8051 -0.5371 11.7930 30 6 2.1241 2.3328 4.9467 31 1 -0.3633 0.4388 0.9293 32 1 -0.3634 0.5853 -0.8446 33 1 -0.3633 -1.0242 -0.0846 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.9069 4.0313 -2.4263 37 1 2.9804 5.9334 -0.1109 38 1 4.0392 6.4066 -1.5451 39 1 2.1778 5.7459 -3.1366 40 1 1.1195 5.2728 -1.7021 41 1 2.9648 4.2226 1.2651 42 1 3.8574 3.7375 2.5626 43 1 2.4331 4.6422 3.1579 44 1 4.8943 2.1712 4.5679 45 1 5.8461 3.6023 4.1050 46 1 5.5164 3.2702 5.8223 47 1 3.9558 3.8415 7.4778 48 1 4.1128 2.2120 6.7791 49 1 1.4512 2.5490 7.6611 50 1 -0.1892 1.2586 10.2633 51 1 2.5785 1.3938 5.2628 52 1 1.0503 2.3056 5.1321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271628903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:27 Heat of formation + Delta-G solvation = 66.011781 kcal Electronic energy + Delta-G solvation = -31111.115628 eV Core-core repulsion = 27112.849995 eV Total energy + Delta-G solvation = -3998.265632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.71382 -41.23219 -39.21561 -38.08202 -36.53110 -35.29434 -34.31184 -32.82697 -32.26955 -30.71978 -30.29760 -27.98047 -27.15486 -25.62556 -25.30570 -24.31559 -23.23181 -23.12186 -22.35700 -21.56422 -20.51833 -19.84626 -19.13124 -18.25095 -17.72148 -17.48685 -16.88699 -16.83480 -16.64863 -16.00258 -15.70325 -15.65669 -15.32741 -15.21822 -15.18559 -14.67666 -14.59042 -14.22420 -13.91626 -13.75492 -13.69394 -13.22655 -13.16011 -13.07949 -12.97187 -12.85027 -12.82393 -12.66199 -12.35673 -12.25259 -12.14129 -12.04749 -11.90200 -11.63951 -11.53119 -11.51440 -11.39272 -11.22316 -11.09631 -10.93229 -10.24553 -9.88831 -9.71034 -8.98616 -7.95111 -5.23463 0.13283 1.20074 1.44380 1.46519 1.47594 1.57361 1.92976 2.01692 2.55634 2.96312 3.17058 3.38385 3.40579 3.45607 3.62193 3.78089 3.82131 3.93361 4.02160 4.10200 4.14727 4.20245 4.21381 4.23687 4.32108 4.35569 4.43084 4.52495 4.53582 4.61466 4.64337 4.68542 4.79896 4.81832 4.83885 4.89777 4.94667 5.03422 5.04229 5.07434 5.10790 5.20851 5.24663 5.28055 5.32784 5.36950 5.45300 5.50760 5.51625 5.67791 6.27395 6.30660 6.83535 7.03911 7.33624 8.10377 8.31674 9.28749 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.002486 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.506086 B =11260.280670 C =12486.654906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.113 3.887 3 N -0.262 5.262 4 N -0.287 5.287 5 C 0.048 3.952 6 C -0.091 4.091 7 C -0.149 4.149 8 C -0.169 4.169 9 C -0.179 4.179 10 C -0.048 4.048 11 C 0.593 3.407 12 O -0.577 6.577 13 N -0.595 5.595 14 C 0.089 3.911 15 C -0.084 4.084 16 H 0.130 0.870 17 C -0.144 4.144 18 C -0.092 4.092 19 H 0.091 0.909 20 C 0.164 3.836 21 N -0.748 5.748 22 C -0.240 4.240 23 H 0.077 0.923 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.971 3.029 27 H -0.264 1.264 28 H -0.292 1.292 29 H -0.297 1.297 30 C 0.129 3.871 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.196 0.804 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.030 0.970 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.036 0.964 48 H 0.023 0.977 49 H 0.372 0.628 50 H 0.250 0.750 51 H 0.045 0.955 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.160 9.865 -26.425 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 N -0.050 5.050 4 N -0.120 5.120 5 C -0.108 4.108 6 C -0.110 4.110 7 C -0.186 4.186 8 C -0.207 4.207 9 C -0.207 4.207 10 C -0.176 4.176 11 C 0.382 3.618 12 O -0.458 6.458 13 N -0.327 5.327 14 C -0.032 4.032 15 C -0.103 4.103 16 H 0.148 0.852 17 C -0.201 4.201 18 C -0.112 4.112 19 H 0.109 0.891 20 C 0.038 3.962 21 N -0.390 5.390 22 C -0.372 4.372 23 H 0.095 0.905 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.801 3.199 27 H -0.188 1.188 28 H -0.219 1.219 29 H -0.225 1.225 30 C 0.006 3.994 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.212 0.788 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.041 0.959 49 H 0.204 0.796 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.754 8.325 -27.112 29.402 hybrid contribution -0.704 -0.729 1.939 2.188 sum 7.050 7.596 -25.172 27.222 Atomic orbital electron populations 1.22015 0.92938 1.04582 1.01748 1.22223 0.96670 0.76027 1.05732 1.45968 1.44822 1.12734 1.01471 1.73057 1.18165 1.07145 1.13663 1.21534 1.03238 0.92657 0.93332 1.20142 1.03604 0.87145 1.00137 1.23153 1.01124 0.93977 1.00329 1.23042 0.94729 1.01599 1.01346 1.22832 1.05385 0.97573 0.94940 1.21241 1.12570 0.94921 0.88821 1.16843 0.78517 0.83074 0.83409 1.90789 1.46369 1.23695 1.84978 1.48137 1.55284 1.23671 1.05600 1.23190 0.95881 0.84814 0.99303 1.22417 0.93661 1.02479 0.91745 0.85246 1.21794 0.96648 0.98823 1.02836 1.22381 0.98549 0.96078 0.94174 0.89051 1.20868 0.90973 0.96088 0.88318 1.42636 1.05617 1.75035 1.15720 1.19666 0.93030 1.31527 0.92959 0.90462 1.25570 0.95387 1.03505 1.02598 1.69827 1.00050 1.54467 1.37831 0.85097 0.77907 0.77051 0.79867 1.18827 1.21918 1.22474 1.21781 0.99497 0.99171 0.78912 0.93943 0.91862 0.87959 0.86219 0.88497 0.85814 0.87740 0.85979 0.86849 0.89943 0.78764 0.87447 0.88167 0.95034 0.89858 0.92052 0.94649 0.95945 0.79607 0.94127 0.93684 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 10.21 71.98 0.74 -2.53 16 2 C 0.11 2.53 6.35 86.38 0.55 3.08 16 3 N -0.26 -6.77 3.35 -334.69 -1.12 -7.89 16 4 N -0.29 -7.14 11.90 -47.49 -0.57 -7.71 16 5 C 0.05 1.00 6.85 43.05 0.30 1.30 16 6 C -0.09 -1.27 6.33 -11.54 -0.07 -1.34 16 7 C -0.15 -1.29 10.02 30.60 0.31 -0.99 16 8 C -0.17 -1.94 10.24 30.60 0.31 -1.63 16 9 C -0.18 -3.59 8.56 22.66 0.19 -3.39 16 10 C -0.05 -1.26 6.89 40.79 0.28 -0.98 16 11 C 0.59 18.67 7.81 86.59 0.68 19.35 16 12 O -0.58 -22.31 14.72 -4.10 -0.06 -22.37 16 13 N -0.60 -16.52 3.31 -815.94 -2.70 -19.22 16 14 C 0.09 1.56 4.59 86.86 0.40 1.96 16 15 C -0.08 -1.57 3.54 -9.40 -0.03 -1.60 16 16 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 17 C -0.14 -2.86 8.13 71.98 0.59 -2.28 16 18 C -0.09 -2.66 2.88 -9.60 -0.03 -2.69 16 19 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 20 C 0.16 6.10 4.52 86.38 0.39 6.49 16 21 N -0.75 -37.49 5.45 -343.46 -1.87 -39.36 16 22 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 23 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 24 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 25 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 26 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 27 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 30 C 0.13 4.36 5.84 86.73 0.51 4.87 16 31 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 2.47 6.65 -2.38 -0.02 2.46 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 0.80 7.22 -2.39 -0.02 0.79 16 38 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.20 2.59 4.40 -2.91 -0.01 2.58 16 42 H 0.11 1.49 5.79 -2.39 -0.01 1.47 16 43 H 0.10 1.31 7.79 -2.39 -0.02 1.29 16 44 H 0.03 0.78 7.91 -2.39 -0.02 0.76 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.33 6.76 -2.39 -0.02 1.31 16 47 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.02 0.87 6.67 -2.39 -0.02 0.85 16 49 H 0.37 20.10 7.52 -92.71 -0.70 19.41 16 50 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 51 H 0.04 1.81 7.77 -2.39 -0.02 1.79 16 52 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -75.94 410.94 2.62 -73.32 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.23 Total: 31.69 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 6.40 Total: 2.97 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -5.98 Total: -134.30 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.94 2.62 -73.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271628903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.332 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds