Wall clock time and date at job start Wed Apr 1 2020 04:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46914 * 2 1 4 4 C 1.34942 * 126.03633 * 125.00265 * 3 2 1 5 5 C 1.35313 * 107.74700 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.04264 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47304 * 89.99444 * 6 5 4 8 8 O 1.21276 * 119.99892 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99695 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99764 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47288 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.43870 * 59.17186 * 11 10 9 13 13 C 1.53139 * 109.43779 * 179.08442 * 11 10 9 14 14 C 1.53694 * 108.88474 * 66.08801 * 13 11 10 15 15 H 1.08997 * 112.59022 * 187.97234 * 14 13 11 16 16 C 1.54610 * 107.86102 * 312.29315 * 14 13 11 17 17 C 1.55896 * 104.89892 * 88.61649 * 16 14 13 18 18 C 1.54607 * 103.99544 * 0.02709 * 17 16 14 19 19 H 1.09003 * 112.18949 * 147.19542 * 18 17 16 20 20 C 1.53152 * 109.43267 * 299.26447 * 11 10 9 21 21 N 1.48284 * 107.23990 * 64.06707 * 14 13 11 22 22 C 1.36941 * 128.21040 * 107.40401 * 21 14 13 23 23 H 1.08004 * 120.00120 * 162.44252 * 22 21 14 24 24 C 1.38809 * 120.00025 * 342.43853 * 22 21 14 25 25 N 1.31621 * 119.99701 * 2.62029 * 24 22 21 26 26 Si 1.86800 * 120.00460 * 182.62073 * 24 22 21 27 27 H 1.48509 * 109.46738 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47569 * 119.99839 * 26 24 22 29 29 H 1.48503 * 109.47250 * 240.00534 * 26 24 22 30 30 C 1.39866 * 107.91827 * 0.26030 * 5 4 3 31 31 N 1.30834 * 108.20443 * 359.55491 * 30 5 4 32 32 H 1.09008 * 109.46997 * 300.00129 * 1 2 3 33 33 H 1.08996 * 109.47027 * 59.99581 * 1 2 3 34 34 H 1.08997 * 109.47159 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.46857 * 239.99815 * 2 1 3 36 36 H 1.09000 * 109.46939 * 119.99481 * 2 1 3 37 37 H 1.08006 * 126.13011 * 359.95771 * 4 3 2 38 38 H 1.09009 * 109.46723 * 329.99893 * 6 5 4 39 39 H 1.08995 * 109.47445 * 209.99949 * 6 5 4 40 40 H 0.96996 * 120.00700 * 359.97438 * 9 7 6 41 41 H 1.08998 * 109.47557 * 59.99648 * 10 9 7 42 42 H 1.09006 * 109.46942 * 299.99569 * 10 9 7 43 43 H 1.08995 * 109.57154 * 185.94527 * 13 11 10 44 44 H 1.08995 * 109.57136 * 306.31117 * 13 11 10 45 45 H 1.09000 * 110.38369 * 207.44955 * 16 14 13 46 46 H 1.09000 * 110.38187 * 329.81554 * 16 14 13 47 47 H 1.08994 * 110.92449 * 241.36544 * 17 16 14 48 48 H 1.08999 * 110.56039 * 118.50663 * 17 16 14 49 49 H 1.09000 * 109.57106 * 53.68795 * 20 11 10 50 50 H 1.08999 * 109.57061 * 174.04961 * 20 11 10 51 51 H 0.97005 * 119.99619 * 180.02562 * 25 24 22 52 52 H 1.08004 * 125.89756 * 179.73920 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8731 1.9211 0.8938 5 6 3.0721 3.2135 0.5457 6 6 3.9560 4.1996 1.2650 7 6 5.3475 4.1397 0.6897 8 8 5.5969 3.3722 -0.2156 9 7 6.3149 4.9390 1.1814 10 6 7.6676 4.8812 0.6217 11 6 8.5650 5.8823 1.3521 12 1 8.5875 5.6411 2.4149 13 6 9.9842 5.8049 0.7820 14 6 9.9620 6.2919 -0.6756 15 1 10.9125 6.1329 -1.1847 16 6 8.7895 5.5849 -1.3939 17 6 7.5581 6.5116 -1.1587 18 6 8.1248 7.6813 -0.3214 19 1 7.6247 8.6246 -0.5406 20 6 8.0100 7.2970 1.1624 21 7 9.5691 7.7216 -0.6554 22 6 10.3540 8.8191 -0.8895 23 1 9.8974 9.7701 -1.1210 24 6 11.7364 8.7093 -0.8293 25 7 12.2942 7.5398 -0.5981 26 14 12.8052 10.2213 -1.0763 27 1 11.9407 11.4041 -1.3194 28 1 13.6276 10.4501 0.1388 29 1 13.6967 10.0118 -2.2453 30 6 2.3083 3.4739 -0.5967 31 7 1.6810 2.3747 -0.9283 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.3184 1.4129 1.7364 38 1 3.9903 3.9503 2.3257 39 1 3.5545 5.2053 1.1410 40 1 6.1154 5.5532 1.9052 41 1 7.6332 5.1311 -0.4387 42 1 8.0692 3.8754 0.7452 43 1 10.6486 6.4389 1.3691 44 1 10.3358 4.7739 0.8164 45 1 8.9968 5.4942 -2.4601 46 1 8.6127 4.6027 -0.9557 47 1 6.7787 5.9899 -0.6033 48 1 7.1681 6.8784 -2.1081 49 1 6.9635 7.3225 1.4662 50 1 8.5846 7.9988 1.7668 51 1 13.2603 7.4632 -0.5556 52 1 2.2491 4.4184 -1.1172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279236708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:09 Heat of formation + Delta-G solvation = 156.596257 kcal Electronic energy + Delta-G solvation = -31393.647149 eV Core-core repulsion = 27399.309555 eV Total energy + Delta-G solvation = -3994.337595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.39948 -41.04850 -38.74425 -34.89760 -34.55206 -32.80414 -32.01438 -31.31451 -30.60896 -30.34003 -29.59343 -27.48199 -25.99982 -24.03192 -23.46513 -23.22358 -21.09187 -20.81451 -20.57050 -19.90103 -19.33356 -18.67494 -17.26888 -17.06368 -16.65599 -15.98894 -15.60519 -15.35513 -14.88646 -14.52778 -14.36245 -14.22953 -13.84218 -13.54281 -13.17600 -13.03135 -12.91934 -12.66298 -12.63278 -12.59220 -12.43353 -11.96192 -11.86722 -11.70422 -11.64577 -11.47987 -11.28875 -11.14848 -10.83648 -10.72780 -10.62871 -10.53970 -10.04137 -9.81476 -9.63950 -9.50986 -9.49818 -9.40209 -9.29481 -9.14559 -8.59850 -8.44659 -8.05714 -6.74933 -5.73079 -3.11657 1.80341 2.35595 2.67907 2.92722 3.38547 3.45232 3.46867 3.66401 4.20120 4.47948 4.57771 4.65507 4.80869 4.84877 4.97746 5.12127 5.18569 5.27654 5.30189 5.35076 5.36494 5.49977 5.53782 5.56578 5.63391 5.65406 5.77616 5.79138 5.90063 5.96241 5.99793 6.11905 6.15893 6.24258 6.34987 6.48741 6.52263 6.56787 6.62305 6.69138 6.74986 6.84321 6.89364 6.93358 7.00693 7.10823 7.13948 7.58283 7.61308 7.64557 7.81312 7.83461 8.31249 8.54709 9.17326 9.78407 10.58576 11.36901 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.002083 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.482455 B =13439.252895 C =13510.167597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.066 3.934 5 C -0.216 4.216 6 C -0.062 4.062 7 C 0.504 3.496 8 O -0.538 6.538 9 N -0.725 5.725 10 C 0.004 3.996 11 C -0.086 4.086 12 H 0.049 0.951 13 C -0.108 4.108 14 C 0.176 3.824 15 H 0.120 0.880 16 C -0.171 4.171 17 C -0.162 4.162 18 C 0.151 3.849 19 H 0.062 0.938 20 C -0.122 4.122 21 N -0.584 5.584 22 C -0.220 4.220 23 H 0.074 0.926 24 C -0.005 4.005 25 N -0.913 5.913 26 Si 0.908 3.092 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 C 0.063 3.937 31 N -0.297 5.297 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.169 0.831 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.392 0.608 41 H 0.193 0.807 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.050 0.950 49 H 0.042 0.958 50 H 0.061 0.939 51 H 0.252 0.748 52 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.221 -11.836 6.914 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.081 4.081 5 C -0.228 4.228 6 C -0.103 4.103 7 C 0.289 3.711 8 O -0.414 6.414 9 N -0.377 5.377 10 C -0.114 4.114 11 C -0.105 4.105 12 H 0.067 0.933 13 C -0.148 4.148 14 C 0.069 3.931 15 H 0.137 0.863 16 C -0.210 4.210 17 C -0.200 4.200 18 C 0.043 3.957 19 H 0.081 0.919 20 C -0.162 4.162 21 N -0.305 5.305 22 C -0.348 4.348 23 H 0.092 0.908 24 C -0.202 4.202 25 N -0.560 5.560 26 Si 0.739 3.261 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 C -0.124 4.124 31 N -0.118 5.118 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.186 0.814 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.226 0.774 41 H 0.208 0.792 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.113 0.887 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -20.615 -12.997 5.404 24.963 hybrid contribution 1.250 1.351 1.238 2.218 sum -19.365 -11.646 6.641 23.553 Atomic orbital electron populations 1.22051 0.93880 1.02721 1.03550 1.21649 0.95920 0.77713 1.03725 1.48555 1.35902 1.10063 1.21137 1.22211 0.95112 0.94335 0.96397 1.19407 1.06897 0.94883 1.01569 1.19921 0.91172 0.99533 0.99708 1.20643 0.86579 0.80475 0.83381 1.90697 1.82702 1.38534 1.29498 1.46411 1.11238 1.41240 1.38828 1.25188 0.80002 0.98629 1.07616 1.21268 0.96734 0.94566 0.97899 0.93294 1.22001 0.93168 0.99309 1.00346 1.21679 0.96595 0.82820 0.92007 0.86267 1.23822 0.97320 0.98906 1.00933 1.23656 0.98027 0.98197 1.00141 1.21487 0.87618 0.95248 0.91364 0.91936 1.22174 0.98012 0.96213 0.99823 1.45136 1.03567 1.01831 1.79995 1.19031 0.87538 0.88233 1.40009 0.90789 1.24888 0.96672 0.96950 1.01659 1.69789 1.09479 1.21550 1.55143 0.86100 0.80516 0.82274 0.77207 1.20555 1.21793 1.21880 1.23720 0.95537 0.97452 0.95648 1.77279 1.24545 0.96709 1.13279 0.92167 0.91067 0.90825 0.89852 0.88816 0.81409 0.88861 0.88294 0.77420 0.79195 0.93564 0.90875 0.94107 0.92857 0.89579 0.88711 0.93138 0.93981 0.92001 0.93748 0.80277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 10.10 37.16 0.38 -0.60 16 2 C 0.13 0.90 7.23 -4.04 -0.03 0.87 16 3 N -0.37 -3.99 3.68 -61.36 -0.23 -4.22 16 4 C 0.07 0.67 11.36 -17.23 -0.20 0.48 16 5 C -0.22 -2.41 4.59 -105.05 -0.48 -2.89 16 6 C -0.06 -0.58 6.19 -29.03 -0.18 -0.76 16 7 C 0.50 6.72 7.59 -10.99 -0.08 6.64 16 8 O -0.54 -9.59 16.03 5.56 0.09 -9.50 16 9 N -0.73 -9.24 4.39 -60.29 -0.26 -9.51 16 10 C 0.00 0.07 2.66 -4.04 -0.01 0.06 16 11 C -0.09 -1.45 2.76 -90.47 -0.25 -1.70 16 12 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.11 -2.23 5.36 -26.30 -0.14 -2.37 16 14 C 0.18 3.99 3.19 -65.74 -0.21 3.78 16 15 H 0.12 3.14 6.08 -51.93 -0.32 2.82 16 16 C -0.17 -3.35 5.75 -24.34 -0.14 -3.49 16 17 C -0.16 -2.93 5.79 -24.34 -0.14 -3.07 16 18 C 0.15 2.98 4.28 -65.73 -0.28 2.70 16 19 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 20 C -0.12 -2.11 5.27 -26.29 -0.14 -2.25 16 21 N -0.58 -14.08 2.83 -152.77 -0.43 -14.51 16 22 C -0.22 -5.88 10.39 -15.06 -0.16 -6.04 16 23 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 24 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 25 N -0.91 -25.49 10.55 55.49 0.59 -24.91 16 26 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 C 0.06 0.75 11.96 -17.37 -0.21 0.55 16 31 N -0.30 -3.84 12.42 30.62 0.38 -3.46 16 32 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.39 4.03 7.37 -40.82 -0.30 3.73 16 41 H 0.19 3.29 1.12 -165.14 -0.19 3.10 16 42 H 0.05 0.79 7.98 -51.93 -0.41 0.37 16 43 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.09 1.58 4.83 -51.93 -0.25 1.33 16 47 H 0.10 1.57 4.04 -51.93 -0.21 1.36 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.04 0.59 6.76 -51.93 -0.35 0.24 16 50 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 52 H 0.18 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 395.08 15.07 5.95 5.95 Total: -1.00 -33.15 395.08 -9.64 -42.79 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.33 Total: 9.12 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.37 Total: -8.31 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.04 Total: -56.60 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.15 -9.64 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279236708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.383 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds