Wall clock time and date at job start Wed Apr 1 2020 04:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47696 * 2 1 4 4 N 1.39937 * 125.74883 * 84.73107 * 3 2 1 5 5 C 1.30446 * 108.89597 * 180.02562 * 4 3 2 6 6 C 1.41294 * 108.02083 * 0.02562 * 5 4 3 7 7 C 1.47431 * 126.41328 * 179.97438 * 6 5 4 8 8 O 1.21609 * 120.00039 * 186.82621 * 7 6 5 9 9 N 1.34780 * 120.00316 * 6.82093 * 7 6 5 10 10 C 1.46499 * 119.99496 * 5.74225 * 9 7 6 11 11 C 1.46494 * 119.99788 * 185.74635 * 9 7 6 12 12 H 1.08993 * 109.47371 * 359.97438 * 11 9 7 13 13 C 1.53003 * 109.46598 * 239.99742 * 11 9 7 14 14 N 1.46505 * 109.47201 * 55.00478 * 13 11 9 15 15 C 1.36940 * 119.99942 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99974 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99792 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99854 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47175 * 59.99710 * 19 17 15 21 21 H 1.48501 * 109.46940 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47228 * 299.99795 * 19 17 15 23 23 C 1.53003 * 109.46988 * 120.00402 * 11 9 7 24 24 C 1.53002 * 117.49419 * 248.73772 * 23 11 9 25 25 C 1.53003 * 117.49454 * 180.08204 * 23 11 9 26 26 C 1.34254 * 125.75882 * 265.06891 * 3 2 1 27 27 C 1.50704 * 126.28719 * 359.95780 * 26 3 2 28 28 C 1.52999 * 117.49885 * 311.30868 * 27 26 3 29 29 C 1.53000 * 117.49620 * 242.64695 * 27 26 3 30 30 H 1.09010 * 109.46908 * 299.99799 * 1 2 3 31 31 H 1.08997 * 109.47102 * 59.99518 * 1 2 3 32 32 H 1.08995 * 109.47751 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47143 * 240.00035 * 2 1 3 34 34 H 1.08997 * 109.47102 * 120.00482 * 2 1 3 35 35 H 1.08003 * 125.99319 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.47650 * 275.71904 * 10 9 7 37 37 H 1.08998 * 109.46995 * 35.72392 * 10 9 7 38 38 H 1.09002 * 109.46406 * 155.72121 * 10 9 7 39 39 H 1.09002 * 109.47324 * 295.00393 * 13 11 9 40 40 H 1.09004 * 109.47254 * 175.00111 * 13 11 9 41 41 H 0.96998 * 119.99472 * 359.97438 * 14 13 11 42 42 H 0.96998 * 119.99657 * 179.97438 * 18 17 15 43 43 H 1.08993 * 115.55429 * 34.41223 * 23 11 9 44 44 H 1.09000 * 117.50154 * 0.02562 * 24 23 11 45 45 H 1.09005 * 117.49221 * 145.01849 * 24 23 11 46 46 H 1.09001 * 117.49474 * 214.97418 * 25 23 11 47 47 H 1.08993 * 117.50096 * 359.97438 * 25 23 11 48 48 H 1.09004 * 115.55218 * 96.97955 * 27 26 3 49 49 H 1.08996 * 117.50206 * 359.97438 * 28 27 26 50 50 H 1.09004 * 117.49903 * 145.02693 * 28 27 26 51 51 H 1.09000 * 117.49515 * 214.98141 * 29 27 26 52 52 H 1.08995 * 117.50172 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1927 2.1867 1.1309 5 6 2.6412 3.3523 0.7543 6 6 2.7722 3.3365 -0.6525 7 6 3.2460 4.4461 -1.4998 8 8 3.1964 4.3502 -2.7111 9 7 3.7340 5.5668 -0.9320 10 6 3.9111 5.6345 0.5206 11 6 4.0871 6.7172 -1.7675 12 1 3.8885 6.4815 -2.8130 13 6 5.5725 7.0388 -1.5909 14 7 6.3686 5.8426 -1.8772 15 6 7.7340 5.8905 -1.7843 16 1 8.2240 6.8101 -1.5005 17 6 8.4882 4.7570 -2.0550 18 7 7.8909 3.6364 -2.4014 19 14 10.3507 4.8225 -1.9291 20 1 10.7406 5.1906 -0.5443 21 1 10.9166 3.4912 -2.2649 22 1 10.8756 5.8375 -2.8775 23 6 3.2500 7.9276 -1.3490 24 6 2.1911 8.4285 -2.3333 25 6 3.4717 9.2367 -2.1093 26 6 2.3683 2.0896 -1.0854 27 6 2.3304 1.6102 -2.5137 28 6 2.9642 0.2518 -2.8200 29 6 3.6582 1.5397 -3.2706 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.8712 4.1840 1.4038 36 1 2.9690 5.9194 0.9888 37 1 4.2223 4.6591 0.8945 38 1 4.6741 6.3754 0.7594 39 1 5.7553 7.3601 -0.5655 40 1 5.8557 7.8365 -2.2776 41 1 5.9284 5.0168 -2.1324 42 1 8.4179 2.8445 -2.5909 43 1 3.0210 7.9958 -0.2856 44 1 2.0906 7.8955 -3.2788 45 1 1.2656 8.8265 -1.9172 46 1 3.3880 10.1661 -1.5460 47 1 4.2141 9.2357 -2.9073 48 1 1.4424 1.8905 -3.0803 49 1 3.4089 -0.2951 -1.9886 50 1 2.4934 -0.3614 -3.5884 51 1 3.6437 1.7732 -4.3352 52 1 4.5591 1.8403 -2.7357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283554652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:33 Heat of formation + Delta-G solvation = 109.047681 kcal Electronic energy + Delta-G solvation = -32233.220368 eV Core-core repulsion = 28236.820912 eV Total energy + Delta-G solvation = -3996.399456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.64458 -40.68521 -38.54464 -38.03497 -36.51002 -35.84266 -35.23365 -33.16442 -31.32809 -30.99572 -29.42671 -27.94192 -26.21832 -25.27872 -24.21098 -23.74017 -23.37032 -22.86806 -22.67582 -21.49589 -20.66414 -19.80178 -19.10287 -18.22144 -17.58480 -17.20818 -16.77939 -16.51195 -16.28637 -15.84199 -15.72666 -15.52212 -15.33996 -15.30245 -14.91426 -14.69293 -14.60146 -14.56908 -13.78877 -13.56767 -13.42552 -13.14106 -13.12767 -12.97740 -12.81616 -12.70671 -12.57904 -12.43880 -12.36384 -12.32716 -12.17786 -12.10717 -12.06553 -11.73625 -11.47234 -11.29982 -11.21082 -10.94372 -10.85485 -10.59861 -10.36444 -9.68548 -9.34198 -8.95382 -7.89643 -5.19309 0.51036 1.19790 1.36201 1.44836 1.48650 1.54454 2.13075 2.55193 2.57062 2.72275 2.96474 3.36788 3.42035 3.46763 3.65339 3.84667 3.92101 3.96983 4.04657 4.05580 4.09888 4.14823 4.17579 4.21192 4.32442 4.33781 4.39044 4.41256 4.50261 4.60309 4.66450 4.73145 4.76868 4.79839 4.82205 4.84833 4.90634 4.96643 5.00708 5.07736 5.10222 5.13831 5.18259 5.20322 5.31402 5.35747 5.41843 5.49551 5.79240 5.90128 6.29128 6.52706 6.62697 7.35747 7.43252 8.13820 8.37743 9.32692 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008239 B = 0.004354 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.748478 B = 6429.357462 C = 8440.698278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 N -0.350 5.350 4 N -0.316 5.316 5 C 0.065 3.935 6 C -0.308 4.308 7 C 0.588 3.412 8 O -0.576 6.576 9 N -0.593 5.593 10 C 0.067 3.933 11 C 0.176 3.824 12 H 0.065 0.935 13 C 0.148 3.852 14 N -0.740 5.740 15 C -0.245 4.245 16 H 0.076 0.924 17 C -0.074 4.074 18 N -0.965 5.965 19 Si 0.972 3.028 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.279 1.279 23 C -0.163 4.163 24 C -0.172 4.172 25 C -0.162 4.162 26 C 0.179 3.821 27 C -0.097 4.097 28 C -0.149 4.149 29 C -0.149 4.149 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.227 0.773 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.027 0.973 41 H 0.373 0.627 42 H 0.247 0.753 43 H 0.126 0.874 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.120 0.880 47 H 0.084 0.916 48 H 0.136 0.864 49 H 0.098 0.902 50 H 0.138 0.862 51 H 0.098 0.902 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.580 -2.544 6.167 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.013 4.013 3 N -0.129 5.129 4 N -0.135 5.135 5 C -0.121 4.121 6 C -0.323 4.323 7 C 0.378 3.622 8 O -0.456 6.456 9 N -0.324 5.324 10 C -0.075 4.075 11 C 0.072 3.928 12 H 0.084 0.916 13 C 0.021 3.979 14 N -0.383 5.383 15 C -0.376 4.376 16 H 0.094 0.906 17 C -0.266 4.266 18 N -0.615 5.615 19 Si 0.801 3.199 20 H -0.202 1.202 21 H -0.224 1.224 22 H -0.205 1.205 23 C -0.183 4.183 24 C -0.209 4.209 25 C -0.199 4.199 26 C 0.045 3.955 27 C -0.117 4.117 28 C -0.185 4.185 29 C -0.187 4.187 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.243 0.757 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.205 0.795 42 H 0.056 0.944 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.132 0.868 46 H 0.138 0.862 47 H 0.103 0.897 48 H 0.153 0.847 49 H 0.116 0.884 50 H 0.156 0.844 51 H 0.117 0.883 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.852 -3.393 6.633 20.271 hybrid contribution 1.618 0.286 -0.876 1.862 sum -17.234 -3.107 5.758 18.434 Atomic orbital electron populations 1.22104 0.92500 1.04684 1.02383 1.22326 0.96850 0.75931 1.06190 1.48816 1.48458 1.12938 1.02650 1.77086 1.24221 1.03739 1.08498 1.25294 0.96041 0.96940 0.93844 1.20055 1.20905 0.96747 0.94586 1.17508 0.76366 0.81600 0.86691 1.90703 1.58521 1.80987 1.15432 1.47335 1.63361 1.13427 1.08247 1.22375 1.02517 1.03314 0.79278 1.20601 0.92977 0.84587 0.94602 0.91636 1.21096 0.89480 0.89334 0.98018 1.42507 1.02927 1.09937 1.82897 1.19594 0.84170 0.96145 1.37721 0.90582 1.25554 1.02224 0.95675 1.03170 1.69886 1.35464 1.01340 1.54841 0.85240 0.80467 0.76110 0.78093 1.20193 1.22426 1.20497 1.22448 1.02550 0.94105 0.99148 1.23028 0.94145 1.03650 1.00062 1.23001 0.99362 0.94835 1.02743 1.20726 0.93916 0.90725 0.90132 1.20441 0.99749 1.02647 0.88875 1.23320 1.01887 0.89399 1.03931 1.22598 0.94215 1.01548 1.00344 0.92782 0.92460 0.87466 0.86539 0.87711 0.75727 0.89179 0.91104 0.90483 0.94853 0.95539 0.79492 0.94406 0.85659 0.90480 0.86794 0.86204 0.89737 0.84662 0.88415 0.84421 0.88348 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.24 71.98 0.74 -1.43 16 2 C 0.11 1.86 6.97 86.38 0.60 2.46 16 3 N -0.35 -9.49 3.58 -333.01 -1.19 -10.68 16 4 N -0.32 -9.42 12.50 -56.27 -0.70 -10.13 16 5 C 0.06 1.93 9.88 85.65 0.85 2.78 16 6 C -0.31 -10.92 5.94 -20.15 -0.12 -11.04 16 7 C 0.59 23.74 7.36 86.66 0.64 24.37 16 8 O -0.58 -26.80 14.07 -4.06 -0.06 -26.86 16 9 N -0.59 -21.13 2.24 -826.48 -1.85 -22.99 16 10 C 0.07 1.87 7.56 127.77 0.97 2.83 16 11 C 0.18 6.39 2.41 44.99 0.11 6.50 16 12 H 0.07 2.83 6.67 -2.39 -0.02 2.82 16 13 C 0.15 6.20 5.29 86.38 0.46 6.66 16 14 N -0.74 -40.06 5.43 -343.43 -1.87 -41.93 16 15 C -0.24 -14.21 9.99 84.03 0.84 -13.37 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 18 N -0.96 -62.02 13.06 21.65 0.28 -61.73 16 19 Si 0.97 47.75 29.55 68.60 2.03 49.77 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 C -0.16 -4.30 5.21 -10.79 -0.06 -4.36 16 24 C -0.17 -4.07 10.18 30.62 0.31 -3.76 16 25 C -0.16 -3.73 9.80 30.62 0.30 -3.43 16 26 C 0.18 5.68 6.44 42.14 0.27 5.95 16 27 C -0.10 -2.79 4.99 -11.54 -0.06 -2.84 16 28 C -0.15 -3.36 8.70 30.62 0.27 -3.09 16 29 C -0.15 -5.10 8.99 30.62 0.28 -4.82 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.12 1.66 5.08 -2.39 -0.01 1.65 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.23 5.28 4.47 -2.91 -0.01 5.27 16 36 H 0.09 1.77 7.38 -2.39 -0.02 1.75 16 37 H 0.07 2.09 5.26 -2.39 -0.01 2.08 16 38 H 0.08 2.14 6.54 -2.39 -0.02 2.13 16 39 H 0.03 1.33 6.87 -2.39 -0.02 1.31 16 40 H 0.03 1.12 7.48 -2.38 -0.02 1.10 16 41 H 0.37 22.39 7.06 -92.71 -0.65 21.73 16 42 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.13 2.79 7.49 -2.39 -0.02 2.78 16 44 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 45 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 46 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.08 2.19 7.66 -2.39 -0.02 2.17 16 48 H 0.14 3.54 8.14 -2.38 -0.02 3.52 16 49 H 0.10 2.11 7.05 -2.39 -0.02 2.09 16 50 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 52 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -80.02 411.84 3.77 -76.25 By element: Atomic # 1 Polarization: 48.54 SS G_CDS: 0.28 Total: 48.83 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.85 Total: -0.53 kcal Atomic # 7 Polarization: -142.12 SS G_CDS: -5.33 Total: -147.46 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.86 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -80.02 3.77 -76.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283554652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.298 kcal (2) G-P(sol) polarization free energy of solvation -80.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds