Wall clock time and date at job start Wed Apr 1 2020 04:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47055 * 2 1 4 4 C 1.34949 * 126.03912 * 124.99978 * 3 2 1 5 5 C 1.35316 * 107.74967 * 180.02562 * 4 3 2 6 6 C 1.50693 * 126.04155 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47435 * 90.00346 * 6 5 4 8 8 O 1.21286 * 119.99637 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00559 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00377 * 179.97438 * 9 7 6 11 11 C 1.52994 * 115.55388 * 180.02562 * 10 9 7 12 12 C 1.53043 * 109.45881 * 39.41758 * 11 10 9 13 13 C 1.53200 * 109.31283 * 181.38502 * 12 11 10 14 14 N 1.46922 * 108.77403 * 305.36806 * 13 12 11 15 15 C 1.36945 * 120.62406 * 233.58210 * 14 13 12 16 16 H 1.08004 * 119.99300 * 151.83454 * 15 14 13 17 17 C 1.38804 * 120.00169 * 331.83180 * 15 14 13 18 18 N 1.31622 * 120.00247 * 343.08859 * 17 15 14 19 19 Si 1.86810 * 119.99877 * 163.08813 * 17 15 14 20 20 H 1.48499 * 109.47137 * 59.99982 * 19 17 15 21 21 H 1.48496 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46625 * 300.00079 * 19 17 15 23 23 C 1.46918 * 118.74045 * 53.86356 * 14 13 12 24 24 C 1.53037 * 109.46384 * 159.48411 * 11 10 9 25 25 C 1.53005 * 117.49788 * 325.67637 * 10 9 7 26 26 C 1.53000 * 117.49923 * 34.33207 * 10 9 7 27 27 C 1.39877 * 107.91971 * 0.26483 * 5 4 3 28 28 N 1.30841 * 108.19849 * 359.55321 * 27 5 4 29 29 H 1.09003 * 109.46958 * 300.00203 * 1 2 3 30 30 H 1.08999 * 109.47254 * 59.99831 * 1 2 3 31 31 H 1.08998 * 109.47490 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46958 * 239.99797 * 2 1 3 33 33 H 1.09000 * 109.46828 * 119.99846 * 2 1 3 34 34 H 1.08002 * 126.12636 * 0.04151 * 4 3 2 35 35 H 1.08998 * 109.47250 * 330.00152 * 6 5 4 36 36 H 1.09005 * 109.47276 * 210.00085 * 6 5 4 37 37 H 0.97002 * 119.99497 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.46205 * 279.44727 * 11 10 9 39 39 H 1.09003 * 109.49689 * 61.43711 * 12 11 10 40 40 H 1.08994 * 109.52465 * 301.35404 * 12 11 10 41 41 H 1.08999 * 109.58400 * 185.57300 * 13 12 11 42 42 H 1.09005 * 109.58309 * 65.15721 * 13 12 11 43 43 H 0.97001 * 120.00021 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.59191 * 65.92603 * 23 14 13 45 45 H 1.09002 * 109.58689 * 186.35392 * 23 14 13 46 46 H 1.08995 * 109.50109 * 298.56615 * 24 11 10 47 47 H 1.09004 * 109.49335 * 58.63587 * 24 11 10 48 48 H 1.09003 * 117.49455 * 214.99972 * 25 10 9 49 49 H 1.09000 * 117.49909 * 0.02562 * 25 10 9 50 50 H 1.09002 * 117.49472 * 359.97438 * 26 10 9 51 51 H 1.08996 * 117.50213 * 144.97310 * 26 10 9 52 52 H 1.07994 * 125.89904 * 179.73465 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0712 3.2138 0.5464 6 6 3.9547 4.1999 1.2659 7 6 5.3461 4.1413 0.6901 8 8 5.5956 3.3745 -0.2159 9 7 6.3130 4.9416 1.1810 10 6 7.6657 4.8842 0.6216 11 6 8.6827 5.8356 1.2549 12 6 8.4597 5.8864 2.7682 13 6 9.4570 6.8662 3.3947 14 7 10.8166 6.4753 2.9978 15 6 11.7872 6.2704 3.9420 16 1 12.5958 5.5822 3.7445 17 6 11.7317 6.9472 5.1526 18 7 10.9664 8.0108 5.2775 19 14 12.7432 6.3486 6.6045 20 1 14.1843 6.3710 6.2467 21 1 12.5085 7.2369 7.7711 22 1 12.3404 4.9617 6.9500 23 6 11.1167 6.3146 1.5686 24 6 10.0993 5.3356 0.9630 25 6 8.1749 3.5232 0.1425 26 6 7.7993 4.6021 -0.8763 27 6 2.3068 3.4745 -0.5957 28 7 1.6800 2.3750 -0.9276 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3192 1.4125 1.7357 35 1 3.9896 3.9501 2.3264 36 1 3.5526 5.2055 1.1426 37 1 6.1133 5.5551 1.9054 38 1 8.5565 6.8338 0.8356 39 1 8.6104 4.8934 3.1917 40 1 7.4430 6.2200 2.9755 41 1 9.3693 6.8324 4.4806 42 1 9.2489 7.8758 3.0404 43 1 10.9280 8.4840 6.1234 44 1 11.0413 7.2802 1.0685 45 1 12.1244 5.9167 1.4493 46 1 10.2346 4.3479 1.4035 47 1 10.2494 5.2769 -0.1151 48 1 9.2343 3.3060 0.2784 49 1 7.5032 2.6706 0.2432 50 1 6.8807 4.4588 -1.4453 51 1 8.6114 5.0950 -1.4108 52 1 2.2468 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284845983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:14 Heat of formation + Delta-G solvation = 91.436199 kcal Electronic energy + Delta-G solvation = -30581.953591 eV Core-core repulsion = 26584.790444 eV Total energy + Delta-G solvation = -3997.163147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.44600 -40.29342 -38.06533 -35.90675 -34.84636 -33.24050 -32.63945 -31.75384 -30.46363 -30.36639 -29.43246 -27.14073 -25.52980 -24.09587 -23.16214 -22.18198 -22.09370 -21.22259 -20.89238 -19.98029 -19.72595 -18.61286 -17.52429 -17.07333 -16.65494 -15.71331 -15.63494 -15.14368 -14.85357 -14.59996 -14.39747 -14.28805 -13.86027 -13.84495 -13.51749 -13.26845 -13.23332 -13.15097 -12.83763 -12.71903 -12.48396 -12.43184 -12.34434 -12.06656 -11.74298 -11.39252 -11.24239 -11.06554 -10.89727 -10.71494 -10.69848 -10.64836 -10.39573 -10.13068 -10.03324 -9.84378 -9.63268 -9.56923 -9.47152 -9.32711 -8.52456 -8.46765 -8.35130 -6.65918 -5.78988 -3.21248 1.73544 2.28941 2.57724 2.69744 3.34936 3.38016 3.43617 3.45172 4.14562 4.21204 4.49704 4.53566 4.60896 4.73638 4.76901 4.83509 4.94698 4.99206 5.07201 5.20948 5.27166 5.30463 5.31892 5.37957 5.45889 5.48790 5.58156 5.62951 5.72345 5.73015 5.78154 5.92385 6.01765 6.09900 6.14125 6.22589 6.36173 6.48096 6.50327 6.56224 6.58290 6.67739 6.75202 6.76931 6.82673 6.88607 7.00724 7.36126 7.53981 7.64402 7.66610 7.79501 8.36712 8.45676 9.21864 9.85294 10.42279 11.29394 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.002051 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.475088 B =13647.545306 C =14261.446482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.373 5.373 4 C 0.068 3.932 5 C -0.217 4.217 6 C -0.061 4.061 7 C 0.509 3.491 8 O -0.530 6.530 9 N -0.695 5.695 10 C 0.107 3.893 11 C -0.041 4.041 12 C -0.132 4.132 13 C 0.171 3.829 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.145 3.855 24 C -0.125 4.125 25 C -0.179 4.179 26 C -0.180 4.180 27 C 0.062 3.938 28 N -0.297 5.297 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.255 -11.170 -8.654 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.155 5.155 4 C -0.078 4.078 5 C -0.229 4.229 6 C -0.103 4.103 7 C 0.295 3.705 8 O -0.407 6.407 9 N -0.345 5.345 10 C 0.020 3.980 11 C -0.060 4.060 12 C -0.171 4.171 13 C 0.045 3.955 14 N -0.314 5.314 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.018 3.982 24 C -0.165 4.165 25 C -0.217 4.217 26 C -0.218 4.218 27 C -0.124 4.124 28 N -0.118 5.118 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.187 0.813 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.108 0.892 52 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.967 -12.324 -9.964 25.492 hybrid contribution 0.993 0.405 1.731 2.036 sum -18.974 -11.919 -8.233 23.872 Atomic orbital electron populations 1.22051 0.93830 1.02781 1.03556 1.21662 0.95968 0.77631 1.03771 1.48565 1.35796 1.10070 1.21111 1.22247 0.94919 0.94324 0.96297 1.19369 1.07065 0.94841 1.01612 1.19911 0.90667 0.99650 1.00033 1.20737 0.86512 0.80135 0.83092 1.90659 1.82321 1.38441 1.29267 1.45468 1.08775 1.41607 1.38652 1.20929 0.83250 0.99255 0.94555 1.20651 0.92546 0.96540 0.96307 1.22202 0.98953 1.02069 0.93883 1.20771 0.82090 0.92403 1.00207 1.44043 1.06829 1.80751 0.99795 1.19145 1.05216 1.18484 0.95232 0.91806 1.25038 0.99410 0.95496 0.99720 1.70019 1.42553 1.17395 1.24859 0.86383 0.80031 0.78100 0.82338 1.20904 1.21670 1.21076 1.21001 0.95808 0.95139 0.86209 1.22228 0.94496 1.00646 0.99124 1.23479 1.01614 0.93474 1.03134 1.23363 1.03311 1.02996 0.92162 1.23695 0.95619 0.97410 0.95699 1.77280 1.24458 0.96697 1.13396 0.92116 0.91098 0.90773 0.89854 0.88731 0.81299 0.88463 0.88199 0.75922 0.91134 0.92367 0.93799 0.89468 0.96469 0.93627 0.96466 0.92743 0.91751 0.92920 0.88432 0.88132 0.87914 0.89194 0.80392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.10 37.16 0.38 -0.56 16 2 C 0.13 0.86 7.23 -4.04 -0.03 0.83 16 3 N -0.37 -3.81 3.68 -61.37 -0.23 -4.03 16 4 C 0.07 0.68 11.36 -17.22 -0.20 0.48 16 5 C -0.22 -2.29 4.59 -105.05 -0.48 -2.77 16 6 C -0.06 -0.55 6.18 -29.04 -0.18 -0.73 16 7 C 0.51 6.31 7.53 -10.99 -0.08 6.23 16 8 O -0.53 -8.37 11.51 5.55 0.06 -8.31 16 9 N -0.69 -8.60 5.39 -47.61 -0.26 -8.86 16 10 C 0.11 1.55 2.98 -131.82 -0.39 1.16 16 11 C -0.04 -0.66 2.45 -90.58 -0.22 -0.88 16 12 C -0.13 -2.31 5.02 -26.61 -0.13 -2.44 16 13 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 14 N -0.59 -14.40 2.99 -172.05 -0.51 -14.92 16 15 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 16 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -25.71 11.20 55.49 0.62 -25.09 16 19 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 C 0.14 2.96 6.54 -3.49 -0.02 2.94 16 24 C -0.13 -2.11 4.02 -26.39 -0.11 -2.22 16 25 C -0.18 -2.69 8.84 -26.69 -0.24 -2.93 16 26 C -0.18 -2.62 9.06 -26.70 -0.24 -2.86 16 27 C 0.06 0.70 11.96 -17.36 -0.21 0.49 16 28 N -0.30 -3.64 12.42 30.63 0.38 -3.26 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.39 8.07 -51.93 -0.42 -0.03 16 34 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 4.28 6.81 -40.82 -0.28 4.00 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.65 6.41 -51.93 -0.33 0.31 16 41 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 46 H 0.06 1.14 6.84 -51.93 -0.35 0.78 16 47 H 0.05 0.79 6.87 -51.93 -0.36 0.43 16 48 H 0.10 1.45 5.91 -51.93 -0.31 1.14 16 49 H 0.10 1.64 6.38 -51.93 -0.33 1.31 16 50 H 0.10 1.62 6.37 -51.93 -0.33 1.29 16 51 H 0.09 1.23 7.27 -51.93 -0.38 0.85 16 52 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -33.29 404.41 -9.71 -43.00 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.44 Total: 5.34 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.41 Total: -6.36 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.01 Total: -56.16 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.06 Total: -8.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.29 -9.71 -43.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284845983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.439 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds