Wall clock time and date at job start Wed Apr 1 2020 04:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.46858 * 2 1 4 4 N 1.28443 * 125.18708 * 272.84448 * 3 2 1 5 5 C 1.30869 * 110.92350 * 179.81841 * 4 3 2 6 6 C 1.50696 * 126.07187 * 180.18452 * 5 4 3 7 7 C 1.52991 * 117.50088 * 164.05044 * 6 5 4 8 8 C 1.52995 * 117.50125 * 95.38602 * 6 5 4 9 9 C 1.39675 * 107.85832 * 0.44265 * 5 4 3 10 10 C 1.36597 * 125.18782 * 93.14848 * 3 2 1 11 11 C 1.47158 * 126.88368 * 359.97438 * 10 3 2 12 12 O 1.21629 * 120.00568 * 7.47959 * 11 10 3 13 13 N 1.34775 * 119.99812 * 187.48483 * 11 10 3 14 14 C 1.47494 * 127.03491 * 358.48316 * 13 11 10 15 15 C 1.54002 * 107.08265 * 154.51597 * 14 13 11 16 16 C 1.54619 * 105.04717 * 1.30892 * 15 14 13 17 17 C 1.52998 * 110.73780 * 263.51125 * 16 15 14 18 18 C 1.53001 * 110.73874 * 140.36527 * 16 15 14 19 19 N 1.46496 * 109.46762 * 179.97438 * 18 16 15 20 20 C 1.36945 * 119.99889 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99624 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99705 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00611 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99444 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47297 * 90.00087 * 24 22 20 26 26 H 1.48500 * 109.46899 * 209.99796 * 24 22 20 27 27 H 1.48498 * 109.47178 * 329.99535 * 24 22 20 28 28 C 1.48114 * 127.03641 * 178.16770 * 13 11 10 29 29 H 1.08996 * 109.47774 * 55.03668 * 1 2 3 30 30 H 1.09000 * 109.46963 * 295.03317 * 1 2 3 31 31 H 1.09003 * 109.47224 * 175.03865 * 1 2 3 32 32 H 1.08993 * 109.47555 * 119.99880 * 2 1 3 33 33 H 1.09000 * 109.46610 * 240.00530 * 2 1 3 34 34 H 1.09001 * 115.54815 * 309.72023 * 6 5 4 35 35 H 1.09002 * 117.50199 * 359.97438 * 7 6 5 36 36 H 1.09002 * 117.50046 * 145.01812 * 7 6 5 37 37 H 1.08996 * 117.50326 * 214.98235 * 8 6 5 38 38 H 1.09007 * 117.49773 * 0.02562 * 8 6 5 39 39 H 1.08004 * 127.31667 * 179.72127 * 9 5 4 40 40 H 1.08998 * 109.90963 * 273.87984 * 14 13 11 41 41 H 1.08998 * 109.91119 * 35.15795 * 14 13 11 42 42 H 1.09007 * 110.32242 * 120.20177 * 15 14 13 43 43 H 1.08995 * 110.32699 * 242.31056 * 15 14 13 44 44 H 1.09001 * 109.47480 * 59.99689 * 17 16 15 45 45 H 1.08998 * 109.47478 * 180.02562 * 17 16 15 46 46 H 1.09005 * 109.46987 * 300.00179 * 17 16 15 47 47 H 1.08999 * 109.47059 * 299.99837 * 18 16 15 48 48 H 1.08996 * 109.46862 * 60.00020 * 18 16 15 49 49 H 0.97002 * 120.00728 * 0.02562 * 19 18 16 50 50 H 0.96993 * 120.00465 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.66270 * 337.77112 * 28 13 11 52 52 H 1.09002 * 110.66671 * 100.88282 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2159 2.0965 -1.0484 5 6 2.6500 3.2883 -0.7262 6 6 2.9868 4.3996 -1.6866 7 6 3.1162 5.8127 -1.1146 8 6 1.9025 5.4411 -1.9702 9 6 2.7515 3.3453 0.6657 10 6 2.3384 2.1030 1.1147 11 6 2.2595 1.6505 2.5127 12 8 2.0078 0.4869 2.7621 13 7 2.4659 2.5254 3.5169 14 6 2.8094 3.9545 3.3935 15 6 2.3204 4.6498 4.6776 16 6 1.7137 3.5191 5.5402 17 6 0.1965 3.4512 5.3551 18 6 2.0694 3.7130 7.0156 19 7 1.4813 2.6289 7.8062 20 6 1.6667 2.5922 9.1625 21 1 2.2468 3.3622 9.6492 22 6 1.1099 1.5646 9.9115 23 7 0.4033 0.6260 9.3183 24 14 1.3623 1.5149 11.7617 25 1 0.2671 2.2619 12.4310 26 1 1.3540 0.1040 12.2247 27 1 2.6664 2.1393 12.1004 28 6 2.3879 2.2501 4.9701 29 1 -0.3634 0.5889 -0.8421 30 1 -0.3633 0.4349 0.9311 31 1 -0.3634 -1.0238 -0.0889 32 1 1.8934 -0.5138 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 3.6493 4.1265 -2.5080 35 1 2.9574 5.9387 -0.0436 36 1 3.8637 6.4694 -1.5599 37 1 1.8519 5.8535 -2.9778 38 1 0.9456 5.3227 -1.4616 39 1 3.0823 4.1812 1.2643 40 1 3.8890 4.0697 3.2969 41 1 2.3085 4.3830 2.5254 42 1 3.1572 5.1157 5.1980 43 1 1.5615 5.3950 4.4391 44 1 -0.0335 3.2566 4.3076 45 1 -0.2093 2.6491 5.9716 46 1 -0.2489 4.3999 5.6546 47 1 3.1530 3.7020 7.1326 48 1 1.6763 4.6690 7.3615 49 1 0.9605 1.9371 7.3690 50 1 0.0146 -0.0922 9.8416 51 1 1.7742 1.3701 5.1625 52 1 3.3851 2.1244 5.3919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324740988.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:43 Heat of formation + Delta-G solvation = 71.502418 kcal Electronic energy + Delta-G solvation = -31258.877195 eV Core-core repulsion = 27260.849654 eV Total energy + Delta-G solvation = -3998.027540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.70837 -41.20662 -39.24669 -38.08414 -36.58609 -35.27690 -34.40829 -32.50772 -31.78348 -30.77177 -30.41592 -27.98798 -27.33444 -25.68230 -25.45514 -24.28133 -23.28169 -23.13469 -22.69814 -21.55901 -20.25807 -19.82858 -19.17824 -18.05849 -17.72842 -17.33157 -16.91618 -16.75630 -16.43229 -16.06554 -15.73987 -15.46344 -15.39398 -15.28866 -15.06533 -14.90327 -14.48061 -14.41209 -13.92788 -13.67799 -13.52813 -13.47339 -13.18472 -13.01104 -12.87619 -12.82622 -12.77141 -12.51865 -12.39900 -12.23636 -12.15386 -12.07213 -11.95851 -11.70889 -11.51026 -11.49333 -11.36580 -11.17441 -11.09907 -10.91628 -10.24906 -9.89202 -9.72175 -8.95739 -7.92485 -5.20587 0.13722 1.19127 1.44790 1.47830 1.49458 1.57760 1.92195 2.03205 2.57583 2.96493 3.16225 3.39815 3.41830 3.59933 3.60734 3.78526 3.86407 3.92464 4.01792 4.10184 4.11200 4.19885 4.23821 4.28100 4.32958 4.34776 4.38844 4.43624 4.56303 4.63432 4.68514 4.70419 4.77889 4.82783 4.88695 4.90535 4.96880 5.01233 5.05262 5.07525 5.10878 5.13859 5.27479 5.29379 5.36317 5.37156 5.45488 5.46795 5.53425 5.68026 6.29416 6.34732 6.84047 7.04044 7.36019 8.13884 8.34710 9.31293 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002516 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.312916 B =11126.950971 C =12328.455468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.262 5.262 4 N -0.288 5.288 5 C 0.048 3.952 6 C -0.092 4.092 7 C -0.149 4.149 8 C -0.167 4.167 9 C -0.181 4.181 10 C -0.048 4.048 11 C 0.598 3.402 12 O -0.580 6.580 13 N -0.598 5.598 14 C 0.083 3.917 15 C -0.113 4.113 16 C -0.072 4.072 17 C -0.122 4.122 18 C 0.167 3.833 19 N -0.745 5.745 20 C -0.238 4.238 21 H 0.080 0.920 22 C -0.080 4.080 23 N -0.973 5.973 24 Si 0.972 3.028 25 H -0.288 1.288 26 H -0.300 1.300 27 H -0.267 1.267 28 C 0.127 3.873 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.198 0.802 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.050 0.950 45 H 0.029 0.971 46 H 0.069 0.931 47 H 0.030 0.970 48 H 0.034 0.966 49 H 0.373 0.627 50 H 0.249 0.751 51 H 0.049 0.951 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 12.585 -25.282 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.049 5.049 4 N -0.121 5.121 5 C -0.108 4.108 6 C -0.112 4.112 7 C -0.186 4.186 8 C -0.205 4.205 9 C -0.209 4.209 10 C -0.176 4.176 11 C 0.387 3.613 12 O -0.461 6.461 13 N -0.330 5.330 14 C -0.037 4.037 15 C -0.151 4.151 16 C -0.073 4.073 17 C -0.179 4.179 18 C 0.041 3.959 19 N -0.388 5.388 20 C -0.370 4.370 21 H 0.098 0.902 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.801 3.199 25 H -0.215 1.215 26 H -0.227 1.227 27 H -0.192 1.192 28 C 0.005 3.995 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.215 0.785 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.206 0.794 50 H 0.058 0.942 51 H 0.067 0.933 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.504 11.135 -25.967 28.785 hybrid contribution -0.280 -0.886 1.904 2.118 sum 5.224 10.248 -24.064 26.672 Atomic orbital electron populations 1.22022 0.92781 1.04691 1.01772 1.22353 0.96788 0.76117 1.06219 1.45965 1.44717 1.12800 1.01465 1.73053 1.19426 1.05835 1.13770 1.21543 1.03122 0.92751 0.93377 1.20136 1.04713 0.86663 0.99669 1.23165 1.00354 0.94268 1.00822 1.23053 0.93804 1.01308 1.02371 1.22897 1.06260 0.96822 0.94925 1.21252 1.12377 0.95085 0.88871 1.16769 0.76928 0.84285 0.83281 1.90771 1.51902 1.18658 1.84795 1.48431 1.67376 1.11683 1.05501 1.22937 1.02236 0.78294 1.00277 1.22626 1.02432 0.96390 0.93674 1.21670 0.95695 0.95054 0.94888 1.21615 0.94345 1.01845 1.00109 1.20823 0.95899 0.91000 0.88196 1.42668 1.63019 1.28992 1.04164 1.19660 1.25570 1.06684 0.85064 0.90219 1.25564 1.01394 0.97846 1.02354 1.69828 1.41074 1.15537 1.35952 0.85157 0.78080 0.76113 0.80531 1.21480 1.22739 1.19163 1.22338 1.00563 0.98338 0.78277 0.91633 0.94062 0.87881 0.87771 0.86485 0.85985 0.87601 0.86095 0.86902 0.89757 0.78517 0.88369 0.87612 0.87982 0.88097 0.93084 0.95164 0.91197 0.95186 0.94843 0.79444 0.94247 0.93267 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 10.24 71.98 0.74 -2.46 16 2 C 0.10 2.39 6.68 86.38 0.58 2.97 16 3 N -0.26 -6.84 3.35 -334.69 -1.12 -7.96 16 4 N -0.29 -7.24 11.90 -47.49 -0.57 -7.81 16 5 C 0.05 1.00 6.85 43.05 0.30 1.30 16 6 C -0.09 -1.31 6.33 -11.55 -0.07 -1.38 16 7 C -0.15 -1.29 10.03 30.62 0.31 -0.98 16 8 C -0.17 -1.89 10.24 30.62 0.31 -1.58 16 9 C -0.18 -3.64 8.66 22.66 0.20 -3.44 16 10 C -0.05 -1.27 6.92 40.78 0.28 -0.99 16 11 C 0.60 18.80 7.87 86.59 0.68 19.48 16 12 O -0.58 -22.49 14.83 -4.12 -0.06 -22.56 16 13 N -0.60 -16.33 3.19 -814.26 -2.60 -18.93 16 14 C 0.08 1.42 5.46 86.53 0.47 1.89 16 15 C -0.11 -2.02 6.09 31.48 0.19 -1.83 16 16 C -0.07 -2.09 0.64 -51.09 -0.03 -2.12 16 17 C -0.12 -3.84 8.30 71.98 0.60 -3.24 16 18 C 0.17 6.09 5.11 86.38 0.44 6.53 16 19 N -0.75 -36.90 5.16 -343.46 -1.77 -38.67 16 20 C -0.24 -13.07 9.99 84.03 0.84 -12.23 16 21 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 24 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 C 0.13 4.18 5.66 86.61 0.49 4.67 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.78 6.01 -2.39 -0.01 2.77 16 33 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 0.77 7.22 -2.39 -0.02 0.75 16 36 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.20 2.60 4.40 -2.91 -0.01 2.59 16 40 H 0.10 1.25 8.13 -2.39 -0.02 1.23 16 41 H 0.11 1.39 5.17 -2.39 -0.01 1.38 16 42 H 0.10 1.50 7.85 -2.38 -0.02 1.48 16 43 H 0.10 1.43 7.87 -2.39 -0.02 1.42 16 44 H 0.05 1.51 8.07 -2.39 -0.02 1.49 16 45 H 0.03 1.19 6.69 -2.39 -0.02 1.17 16 46 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.03 1.07 8.11 -2.39 -0.02 1.05 16 48 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.37 20.20 6.21 -92.71 -0.58 19.63 16 50 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 51 H 0.05 2.03 7.76 -2.39 -0.02 2.01 16 52 H 0.08 2.49 8.02 -2.39 -0.02 2.47 16 Total: -1.00 -75.48 411.97 3.33 -72.16 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.35 Total: 33.36 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.78 Total: 2.44 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -5.77 Total: -133.83 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -75.48 3.33 -72.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324740988.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.659 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds