Wall clock time and date at job start Wed Apr 1 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47006 * 2 1 4 4 N 1.28465 * 124.88728 * 89.97313 * 3 2 1 5 5 C 1.31818 * 110.07366 * 179.97438 * 4 3 2 6 6 C 1.47707 * 126.51843 * 179.97438 * 5 4 3 7 7 O 1.21574 * 119.99942 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00139 * 0.02562 * 6 5 4 9 9 C 1.47422 * 125.64604 * 5.17422 * 8 6 5 10 10 C 1.55122 * 104.94541 * 156.03036 * 9 8 6 11 11 C 1.55154 * 101.48379 * 36.77298 * 10 9 8 12 12 C 1.47020 * 125.64791 * 185.20866 * 8 6 5 13 13 H 1.09002 * 109.88404 * 300.44355 * 12 8 6 14 14 C 1.53000 * 109.88095 * 61.61276 * 12 8 6 15 15 N 1.46500 * 109.46813 * 182.47552 * 14 12 8 16 16 C 1.46501 * 120.00237 * 264.69461 * 15 14 12 17 17 C 1.36943 * 120.00243 * 84.69792 * 15 14 12 18 18 H 1.08000 * 119.99604 * 19.66956 * 17 15 14 19 19 C 1.38806 * 120.00089 * 199.67370 * 17 15 14 20 20 N 1.31615 * 120.00537 * 16.06630 * 19 17 15 21 21 Si 1.86802 * 119.99775 * 196.06939 * 19 17 15 22 22 H 1.48501 * 109.47300 * 59.99711 * 21 19 17 23 23 H 1.48502 * 109.46994 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47188 * 299.99806 * 21 19 17 25 25 C 1.41509 * 106.96102 * 0.22672 * 5 4 3 26 26 C 1.35041 * 124.88006 * 269.97161 * 3 2 1 27 27 C 1.50696 * 126.38702 * 0.03826 * 26 3 2 28 28 C 1.53008 * 117.49925 * 213.74686 * 27 26 3 29 29 C 1.53001 * 117.50338 * 145.08711 * 27 26 3 30 30 H 1.09002 * 109.46945 * 300.00659 * 1 2 3 31 31 H 1.09000 * 109.47156 * 60.00161 * 1 2 3 32 32 H 1.08996 * 109.47160 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47403 * 239.99900 * 2 1 3 34 34 H 1.09006 * 109.46983 * 119.99155 * 2 1 3 35 35 H 1.09006 * 110.36583 * 274.74182 * 9 8 6 36 36 H 1.08996 * 110.37143 * 36.95429 * 9 8 6 37 37 H 1.09005 * 110.93288 * 278.78615 * 10 9 8 38 38 H 1.08995 * 111.16992 * 154.86547 * 10 9 8 39 39 H 1.09002 * 110.72028 * 206.27238 * 11 10 9 40 40 H 1.08996 * 110.72445 * 83.17512 * 11 10 9 41 41 H 1.08999 * 109.46988 * 302.46838 * 14 12 8 42 42 H 1.08996 * 109.47346 * 62.47656 * 14 12 8 43 43 H 1.09000 * 109.47009 * 94.18051 * 16 15 14 44 44 H 1.08998 * 109.47247 * 214.18262 * 16 15 14 45 45 H 1.09007 * 109.46897 * 334.18779 * 16 15 14 46 46 H 0.96994 * 120.00737 * 180.02562 * 20 19 17 47 47 H 1.07998 * 127.24729 * 179.75465 * 25 5 4 48 48 H 1.09007 * 115.54987 * 359.41335 * 27 26 3 49 49 H 1.08995 * 117.49308 * 359.97438 * 28 27 26 50 50 H 1.09000 * 117.49903 * 145.01851 * 28 27 26 51 51 H 1.08994 * 117.50022 * 214.98240 * 29 27 26 52 52 H 1.09005 * 117.49000 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2628 2.0742 1.0538 5 6 2.6882 3.2754 0.7167 6 6 3.0719 4.3630 1.6396 7 8 3.4496 5.4306 1.1974 8 7 3.0032 4.1719 2.9720 9 6 2.6683 2.9019 3.6416 10 6 3.3044 3.0135 5.0520 11 6 3.0821 4.5150 5.3733 12 6 3.2491 5.1955 3.9982 13 1 4.2622 5.5851 3.8980 14 6 2.2348 6.3317 3.8534 15 7 2.5245 7.3738 4.8415 16 6 1.8172 7.3837 6.1245 17 6 3.4563 8.3387 4.5660 18 1 3.7439 8.5354 3.5437 19 6 4.0313 9.0639 5.6005 20 7 3.9348 8.6319 6.8400 21 14 4.9419 10.6531 5.2336 22 1 4.0141 11.6183 4.5913 23 1 5.4583 11.2314 6.5001 24 1 6.0769 10.3731 4.3177 25 6 2.7018 3.3268 -0.6973 26 6 2.2763 2.1091 -1.1078 27 6 2.1148 1.6529 -2.5349 28 6 3.1067 2.1947 -3.5664 29 6 1.6589 2.6917 -3.5616 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 1.5871 2.7901 3.7240 36 1 3.0953 2.0609 3.0955 37 1 4.3673 2.7740 5.0199 38 1 2.7842 2.3792 5.7697 39 1 3.8344 4.8746 6.0754 40 1 2.0792 4.6810 5.7664 41 1 2.3022 6.7533 2.8505 42 1 1.2293 5.9444 4.0179 43 1 2.4116 6.8571 6.8711 44 1 1.6606 8.4136 6.4451 45 1 0.8532 6.8876 6.0117 46 1 4.3363 9.1388 7.5630 47 1 2.9922 4.1614 -1.3183 48 1 1.7630 0.6293 -2.6643 49 1 3.8756 2.8814 -3.2126 50 1 3.4071 1.5277 -4.3745 51 1 1.0074 2.3515 -4.3664 52 1 1.4752 3.7051 -3.2045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328738549.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:24 Heat of formation + Delta-G solvation = 103.060103 kcal Electronic energy + Delta-G solvation = -31343.235478 eV Core-core repulsion = 27346.576381 eV Total energy + Delta-G solvation = -3996.659096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.80641 -39.51643 -37.54159 -37.04390 -35.16960 -34.81997 -31.64334 -31.16496 -30.41999 -30.00663 -28.76250 -25.94003 -25.17562 -24.80376 -24.00155 -22.89581 -22.72922 -21.64791 -20.96078 -20.34699 -19.88896 -18.44893 -17.40598 -16.65425 -16.43274 -16.21307 -15.70905 -15.36928 -14.93475 -14.84292 -14.48960 -14.34131 -13.87916 -13.63634 -13.46115 -13.26975 -13.02082 -12.88023 -12.84280 -12.55789 -12.40240 -12.07484 -11.91516 -11.79433 -11.75378 -11.65916 -11.34805 -11.23414 -11.17252 -10.83203 -10.72600 -10.58883 -10.43778 -10.39612 -10.20746 -10.00157 -9.84806 -9.63340 -9.52778 -9.11507 -8.84528 -8.43812 -8.11580 -6.64630 -5.61547 -3.01840 1.61500 2.02269 2.26423 3.37719 3.50797 3.53816 3.56366 3.57848 3.74758 4.00891 4.15857 4.47203 4.48510 4.59279 4.62280 4.62692 4.65533 4.74828 5.00524 5.03637 5.15226 5.26266 5.28817 5.30698 5.35778 5.47401 5.53632 5.57002 5.62373 5.66712 5.76060 5.77190 5.81584 5.90792 5.94847 6.03153 6.10554 6.28642 6.35140 6.46643 6.57522 6.66654 6.66971 6.81971 6.84646 7.00478 7.20669 7.47227 7.78804 7.85561 7.97286 8.02732 8.50812 8.63021 9.36989 10.00228 10.47865 11.44445 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.002711 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.736831 B =10324.819033 C =11581.219640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.116 3.884 3 N -0.282 5.282 4 N -0.257 5.257 5 C 0.001 3.999 6 C 0.608 3.392 7 O -0.527 6.527 8 N -0.600 5.600 9 C 0.109 3.891 10 C -0.138 4.138 11 C -0.109 4.109 12 C 0.117 3.883 13 H 0.079 0.921 14 C 0.148 3.852 15 N -0.595 5.595 16 C 0.164 3.836 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.902 3.098 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.178 4.178 26 C 0.043 3.957 27 C -0.097 4.097 28 C -0.163 4.163 29 C -0.162 4.162 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.029 0.971 44 H 0.044 0.956 45 H -0.005 1.005 46 H 0.251 0.749 47 H 0.158 0.842 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 -23.292 -16.078 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 N -0.070 5.070 4 N -0.092 5.092 5 C -0.160 4.160 6 C 0.394 3.606 7 O -0.401 6.401 8 N -0.333 5.333 9 C -0.014 4.014 10 C -0.176 4.176 11 C -0.147 4.147 12 C 0.012 3.988 13 H 0.097 0.903 14 C 0.019 3.981 15 N -0.318 5.318 16 C 0.019 3.981 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.198 4.198 20 N -0.556 5.556 21 Si 0.733 3.267 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.210 1.210 25 C -0.206 4.206 26 C -0.081 4.081 27 C -0.116 4.116 28 C -0.200 4.200 29 C -0.200 4.200 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.013 0.987 46 H 0.061 0.939 47 H 0.176 0.824 48 H 0.131 0.869 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.119 0.881 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.845 -23.386 -15.258 28.750 hybrid contribution 0.722 1.113 -0.665 1.484 sum -6.123 -22.273 -15.923 28.056 Atomic orbital electron populations 1.22177 0.93527 1.03400 1.03759 1.21927 0.95936 0.77510 1.05065 1.45479 1.46676 1.12289 1.02540 1.73674 1.17628 1.04966 1.12917 1.21975 1.07243 0.92857 0.93897 1.16482 0.78391 0.85490 0.80209 1.90828 1.47242 1.25852 1.76192 1.48539 1.67682 1.12564 1.04550 1.22334 0.99570 0.86671 0.92818 1.22882 1.00960 0.98017 0.95770 1.22538 1.02992 0.92662 0.96554 1.22697 1.02397 0.88507 0.85164 0.90324 1.21122 0.94109 0.88299 0.94537 1.43950 1.44886 1.27521 1.15435 1.20836 0.90454 0.99833 0.86986 1.19250 1.15803 1.10079 0.92483 0.91169 1.24898 0.99197 1.00100 0.95626 1.70073 1.48584 1.38253 0.98710 0.86356 0.79645 0.84023 0.76726 1.21204 1.21801 1.20962 1.21388 1.07905 0.97643 0.93646 1.20363 1.06188 0.92517 0.89022 1.20253 1.07095 0.99016 0.85266 1.23115 0.93361 1.03551 1.00012 1.23111 0.97622 0.99191 1.00031 0.91206 0.91697 0.90163 0.88466 0.88012 0.91992 0.90195 0.91238 0.90503 0.89829 0.91070 0.92860 0.94475 0.95250 0.93738 0.98665 0.93912 0.82412 0.86867 0.87874 0.88095 0.88096 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.12 0.71 6.74 -4.04 -0.03 0.69 16 3 N -0.28 -3.02 3.30 -57.11 -0.19 -3.21 16 4 N -0.26 -3.54 9.24 33.42 0.31 -3.23 16 5 C 0.00 0.01 6.96 -82.76 -0.58 -0.57 16 6 C 0.61 11.88 7.59 -12.39 -0.09 11.79 16 7 O -0.53 -12.13 16.12 5.30 0.09 -12.05 16 8 N -0.60 -11.08 3.07 -164.03 -0.50 -11.58 16 9 C 0.11 1.61 5.99 -2.42 -0.01 1.60 16 10 C -0.14 -1.95 7.11 -24.47 -0.17 -2.12 16 11 C -0.11 -1.98 5.64 -24.90 -0.14 -2.12 16 12 C 0.12 2.45 3.08 -66.95 -0.21 2.24 16 13 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 14 C 0.15 3.43 5.12 -4.04 -0.02 3.41 16 15 N -0.60 -15.74 2.77 -181.12 -0.50 -16.25 16 16 C 0.16 4.12 7.93 59.85 0.47 4.59 16 17 C -0.25 -7.18 9.67 -15.06 -0.15 -7.33 16 18 H 0.07 2.09 7.88 -52.49 -0.41 1.67 16 19 C 0.00 -0.02 5.04 -17.43 -0.09 -0.11 16 20 N -0.91 -26.98 10.70 55.49 0.59 -26.38 16 21 Si 0.90 22.99 29.58 -169.99 -5.03 17.96 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 24 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 25 C -0.18 -2.47 9.86 -39.36 -0.39 -2.86 16 26 C 0.04 0.46 6.60 -82.21 -0.54 -0.08 16 27 C -0.10 -0.70 5.94 -91.77 -0.54 -1.25 16 28 C -0.16 -1.07 10.05 -26.69 -0.27 -1.34 16 29 C -0.16 -1.07 10.06 -26.69 -0.27 -1.34 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.37 7.12 -51.93 -0.37 0.00 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 40 H 0.07 1.29 7.24 -51.93 -0.38 0.91 16 41 H 0.05 1.35 6.89 -51.93 -0.36 0.99 16 42 H 0.04 0.80 7.74 -51.93 -0.40 0.40 16 43 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 44 H 0.04 1.21 7.13 -51.93 -0.37 0.84 16 45 H -0.01 -0.12 7.80 -51.93 -0.41 -0.52 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 48 H 0.11 0.58 7.17 -51.92 -0.37 0.21 16 49 H 0.10 0.79 7.95 -51.93 -0.41 0.38 16 50 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.10 0.80 7.96 -51.93 -0.41 0.39 16 LS Contribution 414.38 15.07 6.24 6.24 Total: -1.00 -34.63 414.38 -10.45 -45.08 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.82 Total: -1.26 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.64 Total: 4.67 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.29 Total: -60.65 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.96 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.63 -10.45 -45.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328738549.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.141 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds