Wall clock time and date at job start Wed Apr 1 2020 04:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47236 * 2 1 4 4 N 1.28441 * 125.18977 * 85.76130 * 3 2 1 5 5 C 1.30869 * 110.92817 * 179.97438 * 4 3 2 6 6 C 1.50693 * 126.07171 * 180.02562 * 5 4 3 7 7 C 1.52998 * 117.49987 * 163.72646 * 6 5 4 8 8 C 1.53001 * 117.50013 * 95.06223 * 6 5 4 9 9 C 1.39676 * 107.85857 * 0.02562 * 5 4 3 10 10 C 1.36600 * 125.19146 * 265.45373 * 3 2 1 11 11 C 1.47165 * 126.87981 * 0.02562 * 10 3 2 12 12 O 1.21628 * 120.00442 * 5.42116 * 11 10 3 13 13 N 1.34779 * 119.99795 * 185.41060 * 11 10 3 14 14 C 1.46494 * 119.99848 * 185.13243 * 13 11 10 15 15 H 1.09000 * 110.43791 * 36.09386 * 14 13 11 16 16 C 1.54267 * 110.49108 * 273.55099 * 14 13 11 17 17 C 1.53871 * 106.60218 * 217.71777 * 16 14 13 18 18 C 1.54269 * 106.59559 * 359.97438 * 17 16 14 19 19 H 1.09005 * 110.48506 * 264.79885 * 18 17 16 20 20 C 1.53005 * 110.48186 * 142.29597 * 18 17 16 21 21 N 1.46495 * 109.47492 * 66.45253 * 20 18 17 22 22 C 1.36942 * 120.00294 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99038 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00142 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99662 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 120.00161 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46806 * 90.00394 * 26 24 22 28 28 H 1.48500 * 109.47488 * 209.99972 * 26 24 22 29 29 H 1.48502 * 109.47571 * 330.00781 * 26 24 22 30 30 C 1.54883 * 104.19651 * 23.61551 * 18 17 16 31 31 H 1.09003 * 109.46757 * 59.99683 * 1 2 3 32 32 H 1.08996 * 109.47475 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47225 * 300.00469 * 1 2 3 34 34 H 1.09003 * 109.46851 * 119.99768 * 2 1 3 35 35 H 1.08995 * 109.47225 * 239.99531 * 2 1 3 36 36 H 1.09003 * 115.54995 * 309.39691 * 6 5 4 37 37 H 1.09003 * 117.49753 * 359.97438 * 7 6 5 38 38 H 1.08998 * 117.49855 * 145.02456 * 7 6 5 39 39 H 1.08995 * 117.49777 * 214.97906 * 8 6 5 40 40 H 1.09000 * 117.49918 * 359.97438 * 8 6 5 41 41 H 1.08002 * 127.32085 * 179.97438 * 9 5 4 42 42 H 0.96995 * 119.99667 * 5.14067 * 13 11 10 43 43 H 1.09001 * 110.02872 * 336.99899 * 16 14 13 44 44 H 1.08998 * 110.03322 * 98.42515 * 16 14 13 45 45 H 1.08996 * 110.03540 * 119.27997 * 17 16 14 46 46 H 1.09005 * 110.03011 * 240.66649 * 17 16 14 47 47 H 1.09005 * 109.46680 * 186.45604 * 20 18 17 48 48 H 1.09005 * 109.46927 * 306.44744 * 20 18 17 49 49 H 0.96997 * 120.00301 * 359.97438 * 21 20 18 50 50 H 0.97000 * 119.99926 * 179.97438 * 25 24 22 51 51 H 1.09006 * 110.75356 * 203.74119 * 30 18 17 52 52 H 1.08998 * 110.75572 * 80.36888 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1920 2.1049 1.0468 5 6 2.6378 3.2926 0.7253 6 6 2.9581 4.4097 1.6847 7 6 3.8131 5.5660 1.1624 8 6 4.4111 4.5532 2.1422 9 6 2.7640 3.3409 -0.6649 10 6 2.3643 2.0939 -1.1128 11 6 2.3174 1.6300 -2.5086 12 8 1.8475 0.5393 -2.7716 13 7 2.7949 2.4137 -3.4957 14 6 2.6470 2.0026 -4.8939 15 1 1.6943 1.4942 -5.0424 16 6 3.8173 1.0900 -5.3152 17 6 4.1643 1.4622 -6.7673 18 6 3.1923 2.5875 -7.1781 19 1 2.3289 2.1744 -7.6997 20 6 3.9055 3.6166 -8.0575 21 7 4.2758 2.9968 -9.3322 22 6 4.9288 3.7306 -10.2863 23 1 5.1704 4.7665 -10.0991 24 6 5.2791 3.1435 -11.4943 25 7 5.9071 3.8488 -12.4111 26 14 4.8604 1.3521 -11.8183 27 1 3.5188 1.2636 -12.4487 28 1 5.8750 0.7634 -12.7289 29 1 4.8543 0.6052 -10.5348 30 6 2.7625 3.2274 -5.8346 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 2.1772 4.6474 2.4071 37 1 4.1442 5.5185 0.1250 38 1 3.5950 6.5644 1.5415 39 1 4.5860 4.8857 3.1653 40 1 5.1352 3.8393 1.7496 41 1 3.1051 4.1731 -1.2629 42 1 3.2367 3.2499 -3.2801 43 1 4.6778 1.2643 -4.6693 44 1 3.5141 0.0445 -5.2599 45 1 5.1931 1.8171 -6.8262 46 1 4.0302 0.5970 -7.4167 47 1 3.2398 4.4596 -8.2431 48 1 4.8039 3.9680 -7.5498 49 1 4.0584 2.0666 -9.5005 50 1 6.1523 3.4384 -13.2551 51 1 1.8000 3.7289 -5.9361 52 1 3.5240 3.9195 -5.4754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332270753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:53 Heat of formation + Delta-G solvation = 45.019655 kcal Electronic energy + Delta-G solvation = -29922.441276 eV Core-core repulsion = 25923.265357 eV Total energy + Delta-G solvation = -3999.175919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.66304 -40.89668 -39.21444 -38.11924 -36.62879 -35.42184 -34.72972 -33.35477 -32.00937 -30.69236 -30.33519 -29.04477 -26.27239 -25.53908 -24.67421 -23.69160 -23.30202 -23.13279 -21.77671 -21.70340 -20.66086 -20.32878 -19.54099 -18.82962 -17.65493 -17.31914 -16.93256 -16.65896 -16.51295 -16.35797 -15.69372 -15.60007 -15.49841 -15.31558 -15.18693 -14.86288 -14.55639 -14.37463 -14.21728 -13.81989 -13.56961 -13.44423 -13.20966 -13.01050 -12.85565 -12.84341 -12.54467 -12.34482 -12.27083 -12.14203 -12.05717 -11.97078 -11.82204 -11.73972 -11.56865 -11.52372 -11.32847 -11.19425 -11.12994 -10.94638 -10.35433 -10.03113 -9.81650 -9.26361 -8.01763 -5.34231 0.16254 1.29281 1.38139 1.41112 1.44227 1.48525 2.07640 2.09676 2.49042 2.94340 3.29701 3.32541 3.46880 3.51410 3.64247 3.78574 3.81644 3.96524 4.00800 4.02458 4.09207 4.21890 4.26446 4.33298 4.35371 4.43693 4.47363 4.50586 4.55955 4.63122 4.65366 4.69684 4.75493 4.86191 4.87743 4.92836 5.03425 5.06530 5.08071 5.13368 5.15409 5.20898 5.25112 5.33379 5.35066 5.44326 5.50522 5.55117 5.70222 5.77782 6.22816 6.37332 6.98430 7.06801 7.10052 7.87709 8.05791 9.19837 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.001986 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.318849 B =14098.416543 C =15435.733078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.260 5.260 4 N -0.292 5.292 5 C 0.046 3.954 6 C -0.091 4.091 7 C -0.152 4.152 8 C -0.168 4.168 9 C -0.174 4.174 10 C -0.053 4.053 11 C 0.592 3.408 12 O -0.566 6.566 13 N -0.691 5.691 14 C 0.151 3.849 15 H 0.087 0.913 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.093 4.093 19 H 0.078 0.922 20 C 0.162 3.838 21 N -0.759 5.759 22 C -0.231 4.231 23 H 0.058 0.942 24 C -0.067 4.067 25 N -0.985 5.985 26 Si 0.953 3.047 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.251 1.251 30 C -0.107 4.107 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.187 0.813 42 H 0.417 0.583 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.027 0.973 48 H 0.027 0.973 49 H 0.365 0.635 50 H 0.257 0.743 51 H 0.090 0.910 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 -2.691 33.584 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.048 5.048 4 N -0.125 5.125 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.189 4.189 8 C -0.206 4.206 9 C -0.203 4.203 10 C -0.181 4.181 11 C 0.378 3.622 12 O -0.446 6.446 13 N -0.343 5.343 14 C 0.047 3.953 15 H 0.105 0.895 16 C -0.163 4.163 17 C -0.153 4.153 18 C -0.113 4.113 19 H 0.096 0.904 20 C 0.036 3.964 21 N -0.404 5.404 22 C -0.363 4.363 23 H 0.076 0.924 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.781 3.219 27 H -0.205 1.205 28 H -0.224 1.224 29 H -0.175 1.175 30 C -0.146 4.146 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.205 0.795 42 H 0.255 0.745 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.045 0.955 49 H 0.198 0.802 50 H 0.066 0.934 51 H 0.108 0.892 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.022 -4.110 34.218 35.891 hybrid contribution 0.457 -0.275 -1.460 1.555 sum -9.565 -4.385 32.758 34.406 Atomic orbital electron populations 1.22008 0.92671 1.04548 1.01964 1.22336 0.96895 0.75882 1.06080 1.46002 1.44253 1.12852 1.01700 1.73064 1.19925 1.05379 1.14120 1.21442 1.03376 0.92675 0.93500 1.20132 0.95848 0.94831 1.00276 1.23145 1.01007 0.94433 1.00305 1.23051 0.93924 1.02639 1.00983 1.22404 1.06261 0.96790 0.94820 1.21491 1.11997 0.94861 0.89755 1.17022 0.77674 0.84053 0.83470 1.90774 1.47879 1.21751 1.84179 1.45618 1.58718 1.24728 1.05198 1.21794 0.98975 0.95847 0.78688 0.89487 1.22453 0.98317 0.99637 0.95873 1.22098 0.99532 0.98008 0.95627 1.22044 0.98111 0.95473 0.95624 0.90391 1.20846 0.96289 0.94598 0.84670 1.42740 1.70806 1.11176 1.15708 1.19066 1.27808 0.94976 0.94403 0.92448 1.25515 1.01322 1.02536 0.96464 1.69885 1.47651 1.37990 1.08020 0.85426 0.77376 0.80826 0.78294 1.20473 1.22387 1.17538 1.22654 1.03359 0.96240 0.92309 0.93420 0.88029 0.92044 0.87103 0.87276 0.86166 0.87683 0.86429 0.87052 0.89627 0.79537 0.74510 0.91089 0.92035 0.92154 0.92672 0.95538 0.95465 0.80170 0.93416 0.89172 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.24 71.98 0.74 -1.51 16 2 C 0.11 1.79 6.59 86.38 0.57 2.36 16 3 N -0.26 -5.35 3.35 -334.69 -1.12 -6.48 16 4 N -0.29 -6.27 11.90 -47.49 -0.57 -6.83 16 5 C 0.05 0.82 6.85 43.05 0.30 1.12 16 6 C -0.09 -1.17 6.33 -11.54 -0.07 -1.24 16 7 C -0.15 -1.25 10.03 30.62 0.31 -0.95 16 8 C -0.17 -1.76 10.24 30.62 0.31 -1.45 16 9 C -0.17 -2.74 9.78 22.66 0.22 -2.52 16 10 C -0.05 -1.04 6.96 40.79 0.28 -0.75 16 11 C 0.59 12.31 7.78 86.59 0.67 12.98 16 12 O -0.57 -14.87 14.43 -4.12 -0.06 -14.93 16 13 N -0.69 -11.10 5.09 -441.00 -2.25 -13.34 16 14 C 0.15 2.83 3.12 46.06 0.14 2.97 16 15 H 0.09 1.84 7.74 -2.39 -0.02 1.82 16 16 C -0.12 -2.66 6.53 31.32 0.20 -2.46 16 17 C -0.11 -2.96 6.05 31.32 0.19 -2.77 16 18 C -0.09 -2.41 2.93 -9.72 -0.03 -2.43 16 19 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 20 C 0.16 5.68 5.57 86.38 0.48 6.17 16 21 N -0.76 -34.65 5.25 -343.44 -1.80 -36.45 16 22 C -0.23 -13.14 10.47 84.03 0.88 -12.26 16 23 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 24 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 25 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 26 Si 0.95 45.52 27.73 68.60 1.90 47.43 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.25 -10.76 6.52 99.48 0.65 -10.12 16 30 C -0.11 -1.93 5.92 31.88 0.19 -1.74 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 2.03 6.18 -2.39 -0.01 2.01 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 0.75 7.22 -2.39 -0.02 0.73 16 38 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.19 1.66 7.05 -2.91 -0.02 1.64 16 42 H 0.42 4.43 7.61 -92.71 -0.71 3.72 16 43 H 0.07 1.46 8.04 -2.39 -0.02 1.44 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.73 7.77 -2.39 -0.02 1.71 16 46 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.03 0.97 8.05 -2.38 -0.02 0.95 16 49 H 0.37 16.00 5.38 -92.71 -0.50 15.50 16 50 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 51 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 52 H 0.09 1.43 7.94 -2.39 -0.02 1.41 16 Total: -1.00 -74.82 418.53 1.93 -72.89 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.34 Total: 28.70 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.85 Total: -7.99 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -5.43 Total: -126.10 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.06 Total: -14.93 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.43 kcal Total: -74.82 1.93 -72.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332270753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.910 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds