Wall clock time and date at job start Wed Apr 1 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47252 * 2 1 4 4 N 1.28470 * 124.88216 * 270.28623 * 3 2 1 5 5 C 1.31811 * 110.06962 * 180.20245 * 4 3 2 6 6 C 1.47704 * 126.51691 * 179.82348 * 5 4 3 7 7 O 1.21573 * 120.00169 * 179.68986 * 6 5 4 8 8 N 1.34779 * 120.00110 * 359.68248 * 6 5 4 9 9 C 1.47020 * 125.64758 * 0.05092 * 8 6 5 10 10 C 1.54325 * 107.27200 * 178.89951 * 9 8 6 11 11 C 1.55163 * 102.93978 * 337.80358 * 10 9 8 12 12 H 1.08992 * 111.04098 * 277.41456 * 11 10 9 13 13 C 1.53008 * 111.00044 * 153.57489 * 11 10 9 14 14 N 1.46498 * 109.46718 * 181.35191 * 13 11 10 15 15 C 1.46499 * 119.99985 * 90.00501 * 14 13 11 16 16 C 1.36939 * 119.99782 * 269.99829 * 14 13 11 17 17 H 1.08000 * 119.99892 * 334.66398 * 16 14 13 18 18 C 1.38818 * 119.99775 * 154.66743 * 16 14 13 19 19 N 1.31618 * 119.99903 * 4.06679 * 18 16 14 20 20 Si 1.86800 * 119.99547 * 184.06413 * 18 16 14 21 21 H 1.48493 * 109.47192 * 60.00281 * 20 18 16 22 22 H 1.48503 * 109.46739 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47316 * 299.99485 * 20 18 16 24 24 C 1.47421 * 125.64886 * 180.02562 * 8 6 5 25 25 C 1.41503 * 106.96336 * 359.55834 * 5 4 3 26 26 C 1.35038 * 124.88529 * 89.99887 * 3 2 1 27 27 C 1.50703 * 126.38381 * 359.95723 * 26 3 2 28 28 C 1.52998 * 117.49737 * 213.62267 * 27 26 3 29 29 C 1.53002 * 117.49748 * 144.99863 * 27 26 3 30 30 H 1.08998 * 109.47006 * 60.00147 * 1 2 3 31 31 H 1.08998 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47283 * 300.00471 * 1 2 3 33 33 H 1.09003 * 109.47362 * 240.00061 * 2 1 3 34 34 H 1.08998 * 109.47006 * 119.99853 * 2 1 3 35 35 H 1.09000 * 109.88317 * 298.31876 * 9 8 6 36 36 H 1.09002 * 109.88176 * 59.32778 * 9 8 6 37 37 H 1.09002 * 110.71760 * 219.44281 * 10 9 8 38 38 H 1.08993 * 110.71852 * 96.16734 * 10 9 8 39 39 H 1.08993 * 109.46948 * 61.35069 * 13 11 10 40 40 H 1.08998 * 109.46893 * 301.35327 * 13 11 10 41 41 H 1.09002 * 109.46914 * 264.47794 * 15 14 13 42 42 H 1.08997 * 109.47267 * 144.48487 * 15 14 13 43 43 H 1.08989 * 109.47447 * 24.47894 * 15 14 13 44 44 H 0.96996 * 119.99876 * 180.02562 * 19 18 16 45 45 H 1.09001 * 110.36626 * 85.32941 * 24 8 6 46 46 H 1.09002 * 110.46245 * 323.05505 * 24 8 6 47 47 H 1.08002 * 127.25119 * 180.25708 * 25 5 4 48 48 H 1.09005 * 115.54742 * 359.33122 * 27 26 3 49 49 H 1.09000 * 117.50030 * 359.97438 * 28 27 26 50 50 H 1.08997 * 117.49731 * 145.02471 * 28 27 26 51 51 H 1.08999 * 117.49868 * 214.98163 * 29 27 26 52 52 H 1.08998 * 117.49782 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2583 2.0757 -1.0539 5 6 2.6888 3.2751 -0.7169 6 6 3.0737 4.3621 -1.6398 7 8 3.4515 5.4297 -1.1977 8 7 3.0063 4.1705 -2.9722 9 6 2.5684 2.9356 -3.6392 10 6 2.6293 3.1899 -5.1601 11 6 2.5569 4.7368 -5.2569 12 1 1.5256 5.0846 -5.1991 13 6 3.2310 5.2383 -6.5356 14 7 3.1719 6.7015 -6.5771 15 6 4.2532 7.4953 -5.9880 16 6 2.1060 7.3273 -7.1666 17 1 1.5380 6.8200 -7.9323 18 6 1.7558 8.6137 -6.7800 19 7 2.4951 9.2623 -5.9053 20 14 0.2352 9.4242 -7.5012 21 1 -0.9629 8.6116 -7.1706 22 1 0.0827 10.7867 -6.9305 23 1 0.3774 9.5192 -8.9764 24 6 3.3589 5.1645 -4.0022 25 6 2.7062 3.3253 0.6971 26 6 2.2758 2.1094 1.1077 27 6 2.1136 1.6534 2.5349 28 6 1.6864 2.6995 3.5665 29 6 3.1227 2.1722 3.5613 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2345 2.1146 -3.3736 36 1 1.5476 2.6955 -3.3417 37 1 1.7771 2.7318 -5.6621 38 1 3.5670 2.8209 -5.5755 39 1 2.7139 4.8291 -7.4034 40 1 4.2722 4.9162 -6.5478 41 1 3.9821 7.7807 -4.9715 42 1 4.4134 8.3919 -6.5866 43 1 5.1684 6.9038 -5.9674 44 1 2.2502 10.1610 -5.6349 45 1 4.4290 5.1349 -4.2073 46 1 3.0617 6.1640 -3.6847 47 1 3.0009 4.1583 1.3181 48 1 1.7413 0.6371 2.6643 49 1 1.5231 3.7176 3.2130 50 1 1.0329 2.3716 4.3748 51 1 3.4141 1.4974 4.3662 52 1 3.9042 2.8429 3.2041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481488615.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:16 Heat of formation + Delta-G solvation = 99.858743 kcal Electronic energy + Delta-G solvation = -30914.345796 eV Core-core repulsion = 26917.547878 eV Total energy + Delta-G solvation = -3996.797918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.85049 -39.47616 -37.58002 -37.29352 -35.21353 -34.86776 -32.20007 -30.71452 -30.43558 -30.02921 -28.47833 -26.37223 -25.58268 -24.57361 -23.82800 -23.00109 -22.75907 -21.71799 -20.98799 -20.20786 -19.58165 -18.83153 -17.47286 -16.72842 -16.57445 -16.14659 -15.68859 -15.45404 -15.04508 -14.88586 -14.67651 -14.47130 -14.05386 -13.69164 -13.47428 -13.43149 -12.98231 -12.83612 -12.64950 -12.53849 -12.24191 -12.18013 -12.03512 -11.94022 -11.81362 -11.66967 -11.36322 -11.30564 -11.14365 -10.90100 -10.74552 -10.63731 -10.57104 -10.34567 -10.11267 -9.98652 -9.83672 -9.78732 -9.67024 -9.17270 -8.88737 -8.41794 -8.21245 -6.64710 -5.64160 -3.10848 1.56987 1.96075 2.22834 3.31422 3.44015 3.49391 3.50205 3.52379 3.66532 3.97538 4.12928 4.44289 4.46506 4.54817 4.57036 4.59533 4.60002 4.72770 4.99459 5.04906 5.12758 5.22466 5.24906 5.25944 5.31706 5.42892 5.52781 5.55095 5.60888 5.62435 5.68695 5.74107 5.85881 5.88261 5.91591 6.13059 6.15002 6.28857 6.31271 6.36754 6.48774 6.60207 6.63163 6.78730 6.81896 6.93798 7.07621 7.59402 7.79194 7.85664 7.91512 7.97383 8.49327 8.51620 9.34987 9.96387 10.46427 11.40353 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.002414 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.172903 B =11593.984442 C =12057.840216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.116 3.884 3 N -0.281 5.281 4 N -0.254 5.254 5 C -0.002 4.002 6 C 0.610 3.390 7 O -0.534 6.534 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.132 4.132 11 C -0.116 4.116 12 H 0.083 0.917 13 C 0.165 3.835 14 N -0.605 5.605 15 C 0.165 3.835 16 C -0.255 4.255 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.906 5.906 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.123 3.877 25 C -0.178 4.178 26 C 0.043 3.957 27 C -0.097 4.097 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.027 0.973 42 H 0.051 0.949 43 H -0.010 1.010 44 H 0.253 0.747 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.158 0.842 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -23.348 16.887 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 N -0.069 5.069 4 N -0.089 5.089 5 C -0.162 4.162 6 C 0.396 3.604 7 O -0.409 6.409 8 N -0.337 5.337 9 C -0.008 4.008 10 C -0.170 4.170 11 C -0.139 4.139 12 H 0.102 0.898 13 C 0.036 3.964 14 N -0.328 5.328 15 C 0.021 3.979 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.192 4.192 19 N -0.551 5.551 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.002 3.998 25 C -0.206 4.206 26 C -0.080 4.080 27 C -0.117 4.117 28 C -0.199 4.199 29 C -0.200 4.200 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.008 0.992 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.176 0.824 48 H 0.132 0.868 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.119 0.881 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.329 -23.338 16.293 28.494 hybrid contribution -0.860 0.832 0.434 1.273 sum -2.190 -22.506 16.727 28.126 Atomic orbital electron populations 1.22181 0.93491 1.03464 1.03779 1.21941 0.95969 0.77418 1.05126 1.45484 1.46648 1.12242 1.02505 1.73687 1.17330 1.04884 1.12993 1.21880 1.07528 0.92953 0.93844 1.16503 0.78277 0.85399 0.80239 1.90813 1.48108 1.25663 1.76315 1.48442 1.64471 1.16211 1.04620 1.21968 0.99872 0.86449 0.92543 1.22747 1.02275 0.97984 0.94033 1.23216 1.01398 0.92212 0.97026 0.89836 1.20765 0.96698 0.85555 0.93345 1.43937 1.22191 0.99158 1.67468 1.20914 0.85517 0.93262 0.98209 1.19127 1.06412 0.98251 1.14712 0.91524 1.25162 0.98091 0.98286 0.97696 1.70070 1.38018 1.12369 1.34663 0.86387 0.83662 0.78478 0.78313 1.21065 1.21670 1.21114 1.22332 0.98661 0.92748 0.86101 1.21380 1.07895 0.97737 0.93581 1.20370 1.06106 0.92500 0.89062 1.20257 1.06981 0.99215 0.85216 1.23101 0.97887 0.98975 0.99962 1.23104 0.93273 1.03575 1.00080 0.91187 0.90099 0.91695 0.87947 0.88401 0.91798 0.91556 0.90565 0.91012 0.93345 0.94297 0.95433 0.93014 0.99175 0.93681 0.91994 0.89549 0.82402 0.86810 0.87869 0.88047 0.88068 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.15 0.38 -0.55 16 2 C 0.12 0.71 6.74 -4.04 -0.03 0.69 16 3 N -0.28 -3.00 3.30 -57.11 -0.19 -3.19 16 4 N -0.25 -3.51 9.50 33.42 0.32 -3.19 16 5 C 0.00 -0.03 6.98 -82.77 -0.58 -0.61 16 6 C 0.61 11.82 7.86 -12.39 -0.10 11.72 16 7 O -0.53 -12.12 17.18 5.30 0.09 -12.03 16 8 N -0.60 -11.06 3.33 -171.67 -0.57 -11.63 16 9 C 0.11 1.70 5.55 -3.06 -0.02 1.68 16 10 C -0.13 -1.87 6.42 -24.89 -0.16 -2.03 16 11 C -0.12 -2.17 3.29 -88.45 -0.29 -2.46 16 12 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 13 C 0.16 3.33 5.22 -4.04 -0.02 3.31 16 14 N -0.60 -15.33 2.85 -181.12 -0.52 -15.85 16 15 C 0.17 4.23 8.15 59.85 0.49 4.71 16 16 C -0.26 -7.07 9.67 -15.06 -0.15 -7.22 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C 0.01 0.17 5.38 -17.43 -0.09 0.07 16 19 N -0.91 -27.04 10.12 55.49 0.56 -26.48 16 20 Si 0.90 22.32 29.56 -169.99 -5.02 17.30 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.12 2.46 5.37 -2.52 -0.01 2.45 16 25 C -0.18 -2.45 9.86 -39.36 -0.39 -2.84 16 26 C 0.04 0.47 6.60 -82.21 -0.54 -0.08 16 27 C -0.10 -0.70 5.93 -91.77 -0.54 -1.24 16 28 C -0.16 -1.05 10.05 -26.73 -0.27 -1.32 16 29 C -0.16 -1.03 10.05 -26.73 -0.27 -1.30 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.36 7.13 -51.93 -0.37 -0.01 16 35 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 36 H 0.07 0.97 7.64 -51.93 -0.40 0.57 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 39 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 40 H 0.04 0.72 7.81 -51.93 -0.41 0.32 16 41 H 0.03 0.76 6.88 -51.93 -0.36 0.41 16 42 H 0.05 1.43 7.03 -51.93 -0.37 1.07 16 43 H -0.01 -0.23 7.83 -51.94 -0.41 -0.64 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.06 1.22 8.00 -51.93 -0.42 0.81 16 46 H 0.09 2.08 7.54 -51.93 -0.39 1.69 16 47 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 48 H 0.11 0.57 7.18 -51.93 -0.37 0.20 16 49 H 0.10 0.79 7.94 -51.93 -0.41 0.38 16 50 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.10 0.76 7.97 -51.93 -0.41 0.34 16 LS Contribution 416.65 15.07 6.28 6.28 Total: -1.00 -34.51 416.65 -10.54 -45.05 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.90 Total: -1.23 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -2.59 Total: 4.99 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.40 Total: -60.35 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.51 -10.54 -45.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481488615.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.907 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds