Wall clock time and date at job start Wed Apr 1 2020 04:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46995 * 2 1 4 4 N 1.28473 * 124.88403 * 270.33349 * 3 2 1 5 5 C 1.31804 * 110.07291 * 180.15843 * 4 3 2 6 6 C 1.47716 * 126.51750 * 179.82202 * 5 4 3 7 7 O 1.21571 * 119.99618 * 179.69731 * 6 5 4 8 8 N 1.34772 * 120.00142 * 359.69212 * 6 5 4 9 9 C 1.47024 * 125.64422 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26780 * 181.03639 * 9 8 6 11 11 C 1.55443 * 102.96863 * 22.19623 * 10 9 8 12 12 H 1.08999 * 111.01538 * 82.52461 * 11 10 9 13 13 C 1.53006 * 111.11900 * 206.46164 * 11 10 9 14 14 N 1.46491 * 109.47090 * 178.55779 * 13 11 10 15 15 C 1.46498 * 120.00538 * 90.00173 * 14 13 11 16 16 C 1.36938 * 120.00196 * 269.99786 * 14 13 11 17 17 H 1.08011 * 119.99512 * 22.74164 * 16 14 13 18 18 C 1.38812 * 120.00692 * 202.74415 * 16 14 13 19 19 N 1.31625 * 119.99490 * 13.36933 * 18 16 14 20 20 Si 1.86795 * 120.00335 * 193.37095 * 18 16 14 21 21 H 1.48503 * 109.47159 * 59.99677 * 20 18 16 22 22 H 1.48504 * 109.47178 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47066 * 299.99927 * 20 18 16 24 24 C 1.47423 * 125.65110 * 180.02562 * 8 6 5 25 25 C 1.41500 * 106.96339 * 359.56519 * 5 4 3 26 26 C 1.35037 * 124.88653 * 90.00415 * 3 2 1 27 27 C 1.50699 * 126.38296 * 0.03639 * 26 3 2 28 28 C 1.53002 * 117.49697 * 213.62381 * 27 26 3 29 29 C 1.52998 * 60.00070 * 252.51323 * 28 27 26 30 30 H 1.08992 * 109.47264 * 60.00006 * 1 2 3 31 31 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47032 * 299.99969 * 1 2 3 33 33 H 1.09003 * 109.47032 * 240.00031 * 2 1 3 34 34 H 1.08998 * 109.46890 * 119.99874 * 2 1 3 35 35 H 1.08991 * 109.88604 * 300.45181 * 9 8 6 36 36 H 1.08998 * 109.88184 * 61.62761 * 9 8 6 37 37 H 1.08999 * 110.72198 * 140.55760 * 10 9 8 38 38 H 1.09001 * 110.72108 * 263.65338 * 10 9 8 39 39 H 1.09000 * 109.46938 * 298.55989 * 13 11 10 40 40 H 1.08998 * 109.46771 * 58.55601 * 13 11 10 41 41 H 1.09005 * 109.47127 * 95.12272 * 15 14 13 42 42 H 1.08992 * 109.47789 * 215.12823 * 15 14 13 43 43 H 1.09007 * 109.46832 * 335.13007 * 15 14 13 44 44 H 0.96998 * 119.99736 * 180.02562 * 19 18 16 45 45 H 1.09003 * 110.35955 * 274.73249 * 24 8 6 46 46 H 1.08994 * 110.36776 * 36.93552 * 24 8 6 47 47 H 1.08007 * 127.24711 * 180.25738 * 25 5 4 48 48 H 1.08996 * 115.55331 * 359.33215 * 27 26 3 49 49 H 1.08998 * 117.50026 * 0.02562 * 28 27 26 50 50 H 1.09001 * 117.49903 * 145.01975 * 28 27 26 51 51 H 1.09005 * 117.49841 * 252.51092 * 29 28 27 52 52 H 1.09005 * 117.49891 * 107.49042 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2574 2.0760 -1.0539 5 6 2.6872 3.2756 -0.7170 6 6 3.0711 4.3631 -1.6400 7 8 3.4484 5.4308 -1.1977 8 7 3.0032 4.1716 -2.9723 9 6 2.5662 2.9363 -3.6392 10 6 2.6778 3.1727 -5.1601 11 6 3.7090 4.3317 -5.2583 12 1 4.7295 3.9529 -5.2003 13 6 3.5011 5.1478 -6.5356 14 7 4.4672 6.2484 -6.5746 15 6 5.7752 6.0531 -7.2048 16 6 4.1476 7.4599 -6.0219 17 1 3.3849 7.5213 -5.2597 18 6 4.8039 8.6089 -6.4413 19 7 5.5336 8.5874 -7.5365 20 14 4.6515 10.1856 -5.4513 21 1 5.1671 9.9592 -4.0772 22 1 5.4409 11.2596 -6.1062 23 1 3.2247 10.5918 -5.3838 24 6 3.3547 5.1660 -4.0023 25 6 2.7052 3.3256 0.6971 26 6 2.2758 2.1094 1.1077 27 6 2.1153 1.6528 2.5349 28 6 1.6878 2.6981 3.5671 29 6 3.1247 2.1726 3.5605 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2104 2.1080 -3.3445 36 1 1.5321 2.7173 -3.3731 37 1 3.0517 2.2806 -5.6626 38 1 1.7158 3.4729 -5.5754 39 1 3.6463 4.5060 -7.4046 40 1 2.4890 5.5522 -6.5477 41 1 5.7360 6.3986 -8.2379 42 1 6.5294 6.6209 -6.6601 43 1 6.0333 4.9942 -7.1854 44 1 5.9925 9.3902 -7.8294 45 1 2.5047 5.8169 -4.2068 46 1 4.2144 5.7551 -3.6831 47 1 2.9997 4.1588 1.3180 48 1 1.7444 0.6361 2.6644 49 1 1.5222 3.7159 3.2139 50 1 1.0352 2.3692 4.3759 51 1 3.4175 1.4979 4.3651 52 1 3.9048 2.8448 3.2030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481488616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:19 Heat of formation + Delta-G solvation = 77.575101 kcal Electronic energy + Delta-G solvation = -30842.600932 eV Core-core repulsion = 26844.836723 eV Total energy + Delta-G solvation = -3997.764209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.80599 -40.93899 -38.88009 -38.14296 -37.09674 -35.58904 -33.95681 -32.39618 -31.40373 -30.95229 -30.05362 -27.86804 -27.64632 -25.68339 -24.79285 -24.08960 -23.24455 -22.95576 -22.63587 -21.16416 -21.02852 -19.98562 -18.79480 -18.38105 -17.80198 -17.30574 -16.94334 -16.81877 -16.30110 -15.93278 -15.77969 -15.45084 -15.26543 -15.09652 -15.05311 -14.61057 -14.46245 -14.37135 -13.89308 -13.79572 -13.47712 -13.19253 -13.07243 -13.04951 -12.86526 -12.76910 -12.62847 -12.42201 -12.39426 -12.27774 -12.16293 -12.04348 -11.98499 -11.91377 -11.82229 -11.56640 -11.48189 -11.35602 -11.26390 -10.61009 -10.20039 -9.76329 -9.67027 -8.73780 -7.81593 -5.28483 0.45328 0.94884 1.41248 1.43210 1.44776 1.51384 1.97022 2.26126 2.49901 3.02014 3.13788 3.31130 3.42723 3.50753 3.73897 3.76475 3.93003 3.97388 3.99865 4.01875 4.08777 4.09135 4.29913 4.34591 4.34892 4.46302 4.49133 4.68252 4.73534 4.74054 4.79743 4.80934 4.83891 4.84744 4.89762 4.96042 5.00249 5.01717 5.07146 5.15353 5.20913 5.23156 5.23734 5.26121 5.33349 5.41819 5.50866 5.66227 5.74373 5.82896 6.35099 6.44106 6.78823 7.06257 7.18017 7.91002 8.32742 9.20888 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002512 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.468399 B =11141.711765 C =12486.258914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.268 5.268 4 N -0.253 5.253 5 C -0.036 4.036 6 C 0.601 3.399 7 O -0.586 6.586 8 N -0.608 5.608 9 C 0.118 3.882 10 C -0.114 4.114 11 C -0.105 4.105 12 H 0.069 0.931 13 C 0.162 3.838 14 N -0.619 5.619 15 C 0.176 3.824 16 C -0.249 4.249 17 H 0.066 0.934 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.953 3.047 21 H -0.290 1.290 22 H -0.289 1.289 23 H -0.275 1.275 24 C 0.130 3.870 25 C -0.205 4.205 26 C 0.061 3.939 27 C -0.101 4.101 28 C -0.160 4.160 29 C -0.161 4.161 30 H 0.048 0.952 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.033 0.967 44 H 0.247 0.753 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.149 0.851 48 H 0.148 0.852 49 H 0.083 0.917 50 H 0.126 0.874 51 H 0.127 0.873 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 -27.072 20.155 35.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.057 5.057 4 N -0.090 5.090 5 C -0.194 4.194 6 C 0.389 3.611 7 O -0.465 6.465 8 N -0.340 5.340 9 C -0.004 4.004 10 C -0.152 4.152 11 C -0.127 4.127 12 H 0.087 0.913 13 C 0.035 3.965 14 N -0.342 5.342 15 C 0.031 3.969 16 C -0.379 4.379 17 H 0.083 0.917 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.782 3.218 21 H -0.217 1.217 22 H -0.215 1.215 23 H -0.201 1.201 24 C 0.007 3.993 25 C -0.234 4.234 26 C -0.064 4.064 27 C -0.120 4.120 28 C -0.197 4.197 29 C -0.198 4.198 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.166 0.834 48 H 0.166 0.834 49 H 0.102 0.898 50 H 0.144 0.856 51 H 0.145 0.855 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.703 -27.179 19.387 35.377 hybrid contribution 0.643 2.396 0.807 2.609 sum -11.060 -24.783 20.194 33.827 Atomic orbital electron populations 1.22160 0.92538 1.05024 1.02589 1.22498 0.96685 0.74941 1.07428 1.46018 1.44619 1.13349 1.01719 1.73572 1.17217 1.03977 1.14249 1.21457 1.10577 0.93338 0.93988 1.17065 0.77409 0.85750 0.80865 1.90762 1.50387 1.28097 1.77291 1.48581 1.64073 1.17021 1.04293 1.22142 1.00459 0.85270 0.92532 1.22768 0.99791 0.98814 0.93828 1.22968 0.99425 0.95603 0.94681 0.91276 1.20847 0.92535 0.88631 0.94455 1.44139 1.13218 1.09224 1.67601 1.20536 0.85904 0.94708 0.95749 1.19383 1.19384 0.85093 1.14079 0.91669 1.25624 1.01355 1.00188 0.97530 1.70197 1.36854 1.28138 1.23145 0.85556 0.77812 0.80377 0.78070 1.21739 1.21524 1.20060 1.22084 0.98812 0.91023 0.87336 1.21455 1.09731 0.99317 0.92851 1.20770 1.03624 0.91171 0.90810 1.20502 1.07852 1.00874 0.82792 1.23155 0.98457 0.97950 1.00171 1.23168 0.92777 1.03574 1.00299 0.93308 0.87166 0.91877 0.86900 0.85039 0.90594 0.90443 0.87217 0.89373 0.91528 0.93336 0.97379 0.97318 0.94829 0.94381 0.92771 0.94111 0.83365 0.83411 0.89793 0.85557 0.85531 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 71.98 0.74 -0.27 16 2 C 0.10 0.78 6.74 86.38 0.58 1.36 16 3 N -0.27 -4.92 3.30 -334.60 -1.10 -6.03 16 4 N -0.25 -6.49 9.50 -48.17 -0.46 -6.95 16 5 C -0.04 -1.15 6.98 42.46 0.30 -0.86 16 6 C 0.60 24.06 7.86 86.75 0.68 24.75 16 7 O -0.59 -28.43 17.18 -3.94 -0.07 -28.49 16 8 N -0.61 -22.12 3.33 -815.40 -2.71 -24.83 16 9 C 0.12 3.12 5.54 86.73 0.48 3.60 16 10 C -0.11 -2.72 6.43 31.88 0.21 -2.52 16 11 C -0.10 -3.58 3.30 -9.31 -0.03 -3.61 16 12 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 13 C 0.16 6.33 5.20 86.38 0.45 6.77 16 14 N -0.62 -31.57 2.87 -726.94 -2.09 -33.66 16 15 C 0.18 8.93 8.98 127.77 1.15 10.07 16 16 C -0.25 -14.22 8.98 84.03 0.75 -13.46 16 17 H 0.07 3.71 6.73 -2.91 -0.02 3.69 16 18 C -0.05 -3.08 5.09 84.86 0.43 -2.65 16 19 N -0.94 -57.53 10.72 21.65 0.23 -57.30 16 20 Si 0.95 48.72 29.57 68.60 2.03 50.75 16 21 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 22 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 23 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 24 C 0.13 5.29 5.06 86.85 0.44 5.73 16 25 C -0.21 -5.71 9.86 22.41 0.22 -5.48 16 26 C 0.06 1.18 6.60 41.40 0.27 1.45 16 27 C -0.10 -1.08 5.93 -11.54 -0.07 -1.15 16 28 C -0.16 -1.64 10.05 30.59 0.31 -1.33 16 29 C -0.16 -1.65 10.05 30.59 0.31 -1.34 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.13 0.19 7.13 -2.39 -0.02 0.17 16 35 H 0.08 1.90 7.66 -2.39 -0.02 1.88 16 36 H 0.08 1.90 7.77 -2.39 -0.02 1.88 16 37 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 39 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 40 H 0.05 1.91 8.00 -2.39 -0.02 1.89 16 41 H 0.01 0.44 7.34 -2.38 -0.02 0.42 16 42 H 0.01 0.45 7.33 -2.39 -0.02 0.44 16 43 H 0.03 1.42 8.03 -2.38 -0.02 1.40 16 44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.05 2.33 7.44 -2.39 -0.02 2.31 16 46 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 47 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 48 H 0.15 0.62 7.18 -2.39 -0.02 0.60 16 49 H 0.08 1.20 7.94 -2.39 -0.02 1.18 16 50 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.08 1.21 7.97 -2.38 -0.02 1.19 16 Total: -1.00 -81.61 416.85 3.94 -77.66 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.89 Total: 7.78 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 7.21 Total: 21.06 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -6.13 Total: -128.76 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.07 Total: -28.49 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -81.61 3.94 -77.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481488616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.239 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds