Wall clock time and date at job start Wed Apr 1 2020 04:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47204 * 2 1 4 4 N 1.28469 * 124.87986 * 269.69939 * 3 2 1 5 5 C 1.31814 * 110.06702 * 179.88490 * 4 3 2 6 6 C 1.47714 * 126.51526 * 180.12771 * 5 4 3 7 7 O 1.21568 * 119.99934 * 180.28213 * 6 5 4 8 8 N 1.34774 * 119.99894 * 0.28080 * 6 5 4 9 9 C 1.46501 * 120.00152 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47420 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47167 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.46991 * 179.97438 * 11 10 9 13 13 C 1.36938 * 119.99820 * 269.99552 * 12 11 10 14 14 H 1.08000 * 119.99798 * 140.54024 * 13 12 11 15 15 C 1.38803 * 120.00354 * 320.53942 * 13 12 11 16 16 N 1.31621 * 119.99977 * 340.27581 * 15 13 12 17 17 Si 1.86802 * 120.00172 * 160.27749 * 15 13 12 18 18 H 1.48498 * 109.47075 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47116 * 120.00023 * 17 15 13 20 20 H 1.48506 * 109.47043 * 240.00334 * 17 15 13 21 21 C 1.46506 * 119.99855 * 90.00068 * 12 11 10 22 22 C 1.52999 * 117.49519 * 183.28260 * 21 12 11 23 23 C 1.52995 * 60.00280 * 252.51503 * 22 21 12 24 24 C 1.41498 * 106.96581 * 0.36573 * 5 4 3 25 25 C 1.35030 * 124.88283 * 89.99708 * 3 2 1 26 26 C 1.50694 * 126.39095 * 359.97438 * 25 3 2 27 27 C 1.52996 * 117.50133 * 213.62312 * 26 25 3 28 28 C 1.52996 * 117.50257 * 144.99508 * 26 25 3 29 29 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47384 * 60.00135 * 1 2 3 31 31 H 1.09005 * 109.47626 * 299.99835 * 1 2 3 32 32 H 1.09001 * 109.46987 * 119.99571 * 2 1 3 33 33 H 1.09000 * 109.46952 * 239.99945 * 2 1 3 34 34 H 0.97001 * 120.00725 * 0.02562 * 8 6 5 35 35 H 1.09009 * 109.46770 * 300.00418 * 9 8 6 36 36 H 1.08996 * 109.47195 * 59.99579 * 9 8 6 37 37 H 1.08996 * 109.46789 * 299.99703 * 10 9 8 38 38 H 1.09002 * 109.47172 * 59.99882 * 10 9 8 39 39 H 1.09009 * 109.47000 * 300.00235 * 11 10 9 40 40 H 1.08996 * 109.47218 * 59.99551 * 11 10 9 41 41 H 0.97002 * 120.00192 * 175.01548 * 16 15 13 42 42 H 1.08997 * 115.54931 * 328.99684 * 21 12 11 43 43 H 1.09003 * 117.50041 * 0.02562 * 22 21 12 44 44 H 1.09000 * 117.49672 * 145.01897 * 22 21 12 45 45 H 1.09000 * 117.49737 * 252.51575 * 23 22 21 46 46 H 1.08993 * 117.51976 * 107.48360 * 23 22 21 47 47 H 1.07999 * 127.25048 * 179.77973 * 24 5 4 48 48 H 1.09007 * 115.54977 * 359.32782 * 26 25 3 49 49 H 1.09000 * 117.49575 * 359.97438 * 27 26 25 50 50 H 1.08998 * 117.50440 * 145.02220 * 27 26 25 51 51 H 1.08996 * 117.49880 * 214.97588 * 28 26 25 52 52 H 1.09000 * 117.49802 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2684 2.0720 -1.0539 5 6 2.6892 3.2749 -0.7169 6 6 3.0749 4.3617 -1.6399 7 8 3.4532 5.4291 -1.1978 8 7 3.0075 4.1700 -2.9722 9 6 3.3906 5.2477 -3.8877 10 6 3.2223 4.7735 -5.3326 11 6 3.6218 5.8992 -6.2887 12 7 3.4612 5.4449 -7.6721 13 6 4.5039 4.8364 -8.3183 14 1 4.3187 3.9940 -8.9683 15 6 5.7990 5.3021 -8.1380 16 7 6.0029 6.5210 -7.6850 17 14 7.2525 4.1991 -8.5382 18 1 6.7583 2.8869 -9.0269 19 1 8.0841 4.8382 -9.5895 20 1 8.0706 3.9953 -7.3157 21 6 2.1850 5.6418 -8.3643 22 6 2.0551 5.0772 -9.7804 23 6 2.1723 6.5877 -9.5668 24 6 2.7065 3.3252 0.6971 25 6 2.2757 2.1093 1.1077 26 6 2.1138 1.6534 2.5348 27 6 1.6866 2.6993 3.5665 28 6 3.1230 2.1723 3.5611 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.7054 3.3184 -3.3251 35 1 2.7541 6.1154 -3.7139 36 1 4.4315 5.5199 -3.7132 37 1 3.8585 3.9057 -5.5066 38 1 2.1812 4.5016 -5.5069 39 1 2.9852 6.7668 -6.1145 40 1 4.6627 6.1716 -6.1145 41 1 6.9044 6.8216 -7.4903 42 1 1.2985 5.6213 -7.7306 43 1 2.9189 4.5590 -10.1969 44 1 1.0828 4.6850 -10.0785 45 1 1.2770 7.1892 -9.7245 46 1 3.1131 7.0638 -9.8427 47 1 3.0013 4.1582 1.3180 48 1 1.7418 0.6370 2.6644 49 1 1.5230 3.7173 3.2130 50 1 1.0333 2.3713 4.3750 51 1 3.4145 1.4975 4.3659 52 1 3.9043 2.8431 3.2039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490374677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:15 Heat of formation + Delta-G solvation = 88.321432 kcal Electronic energy + Delta-G solvation = -29658.046469 eV Core-core repulsion = 25660.748255 eV Total energy + Delta-G solvation = -3997.298213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.80354 -40.53113 -38.83913 -38.13515 -36.70635 -35.60281 -35.24442 -33.39583 -31.61294 -31.32566 -30.59680 -27.40934 -25.98843 -25.01143 -24.35245 -23.23736 -23.14798 -22.97539 -22.49371 -21.65241 -21.39794 -20.34943 -18.67064 -18.25335 -17.68411 -17.30458 -17.10656 -16.80895 -16.44993 -16.35108 -16.03338 -15.69632 -15.49777 -15.27487 -14.99339 -14.80377 -14.45393 -14.35965 -13.93128 -13.66507 -13.52275 -13.23850 -13.07800 -12.80303 -12.77417 -12.61402 -12.46225 -12.40288 -12.33737 -12.28687 -12.02753 -12.01411 -11.95604 -11.87787 -11.45579 -11.35881 -11.31008 -11.24958 -10.88012 -10.48898 -10.33021 -10.00962 -9.76498 -8.49390 -7.78003 -5.50601 0.45259 0.96523 1.41850 1.44649 1.45911 1.54917 2.12019 2.29714 2.48540 3.03112 3.16076 3.21636 3.41651 3.43505 3.51300 3.78500 3.95082 3.99598 4.00256 4.09941 4.15934 4.21513 4.32539 4.33235 4.34976 4.46211 4.48326 4.55459 4.60375 4.70207 4.75452 4.77804 4.82208 4.82564 4.91189 4.95788 5.02726 5.07387 5.10431 5.16180 5.21573 5.27190 5.27634 5.37331 5.37769 5.46124 5.56907 5.68582 5.81218 5.82056 6.40108 6.47605 6.86134 7.10367 7.16598 7.84849 8.37312 9.11099 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.002045 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.472565 B =13685.457973 C =14083.558927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.268 5.268 4 N -0.269 5.269 5 C -0.039 4.039 6 C 0.597 3.403 7 O -0.575 6.575 8 N -0.704 5.704 9 C 0.133 3.867 10 C -0.121 4.121 11 C 0.155 3.845 12 N -0.568 5.568 13 C -0.257 4.257 14 H 0.059 0.941 15 C -0.035 4.035 16 N -0.914 5.914 17 Si 0.950 3.050 18 H -0.265 1.265 19 H -0.293 1.293 20 H -0.290 1.290 21 C 0.101 3.899 22 C -0.180 4.180 23 C -0.221 4.221 24 C -0.202 4.202 25 C 0.059 3.941 26 C -0.104 4.104 27 C -0.157 4.157 28 C -0.160 4.160 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.413 0.587 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.250 0.750 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.052 0.948 47 H 0.155 0.845 48 H 0.145 0.855 49 H 0.087 0.913 50 H 0.125 0.875 51 H 0.125 0.875 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 -16.458 23.233 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.057 5.057 4 N -0.106 5.106 5 C -0.197 4.197 6 C 0.383 3.617 7 O -0.453 6.453 8 N -0.354 5.354 9 C 0.009 3.991 10 C -0.162 4.162 11 C 0.029 3.971 12 N -0.285 5.285 13 C -0.387 4.387 14 H 0.077 0.923 15 C -0.233 4.233 16 N -0.557 5.557 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.216 1.216 21 C -0.007 4.007 22 C -0.218 4.218 23 C -0.262 4.262 24 C -0.230 4.230 25 C -0.065 4.065 26 C -0.124 4.124 27 C -0.195 4.195 28 C -0.198 4.198 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.127 0.873 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.071 0.929 47 H 0.173 0.827 48 H 0.163 0.837 49 H 0.106 0.894 50 H 0.143 0.857 51 H 0.143 0.857 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.249 -16.393 22.524 30.848 hybrid contribution 1.367 0.337 -0.267 1.433 sum -11.882 -16.056 22.257 29.905 Atomic orbital electron populations 1.22156 0.92450 1.05022 1.02645 1.22484 0.96781 0.75154 1.07270 1.45922 1.44611 1.13426 1.01744 1.73482 1.17747 1.04438 1.14926 1.21662 1.10451 0.93193 0.94432 1.17254 0.76945 0.85578 0.81959 1.90749 1.49346 1.27408 1.77834 1.45869 1.66397 1.18162 1.05002 1.21231 0.99673 0.89640 0.88577 1.22104 1.01615 1.00616 0.91819 1.20646 1.01215 0.92816 0.82433 1.43544 1.08668 1.67651 1.08681 1.19198 0.86273 1.07720 1.25539 0.92321 1.25896 1.00726 0.95725 1.00918 1.70189 1.20737 1.15967 1.48840 0.85486 0.80111 0.79406 0.77134 1.18960 1.22033 1.21645 1.21566 0.90048 1.01477 0.87620 1.23016 1.02148 0.95866 1.00740 1.23255 1.00863 0.92869 1.09184 1.21500 1.09435 0.99229 0.92825 1.20832 1.03589 0.91424 0.90691 1.20499 1.08092 1.00903 0.82860 1.23165 0.98347 0.97988 0.99992 1.23173 0.92876 1.03579 1.00156 0.87258 0.93426 0.91561 0.84949 0.87349 0.75045 0.91533 0.93221 0.92825 0.91235 0.94902 0.92066 0.94082 0.86929 0.90768 0.87038 0.88130 0.92915 0.82691 0.83712 0.89420 0.85658 0.85703 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.24 71.98 0.74 -0.46 16 2 C 0.10 0.92 6.74 86.38 0.58 1.50 16 3 N -0.27 -5.08 3.30 -334.60 -1.10 -6.18 16 4 N -0.27 -7.05 11.67 -48.17 -0.56 -7.61 16 5 C -0.04 -1.19 7.13 42.46 0.30 -0.88 16 6 C 0.60 21.28 7.82 86.75 0.68 21.96 16 7 O -0.58 -24.19 16.93 -3.93 -0.07 -24.25 16 8 N -0.70 -23.23 5.55 -466.09 -2.59 -25.82 16 9 C 0.13 4.81 5.67 86.38 0.49 5.30 16 10 C -0.12 -4.61 5.65 30.60 0.17 -4.44 16 11 C 0.16 7.20 5.33 86.38 0.46 7.67 16 12 N -0.57 -27.89 2.75 -678.03 -1.86 -29.75 16 13 C -0.26 -13.85 8.47 84.03 0.71 -13.14 16 14 H 0.06 3.17 6.74 -2.91 -0.02 3.15 16 15 C -0.03 -1.94 4.98 84.86 0.42 -1.52 16 16 N -0.91 -53.94 11.50 21.65 0.25 -53.69 16 17 Si 0.95 45.04 29.60 68.60 2.03 47.07 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 C 0.10 4.21 6.57 44.99 0.30 4.51 16 22 C -0.18 -6.85 9.80 30.59 0.30 -6.55 16 23 C -0.22 -8.98 10.36 30.59 0.32 -8.66 16 24 C -0.20 -5.20 9.86 22.41 0.22 -4.98 16 25 C 0.06 1.12 6.60 41.40 0.27 1.39 16 26 C -0.10 -1.07 5.93 -11.54 -0.07 -1.14 16 27 C -0.16 -1.43 10.05 30.59 0.31 -1.12 16 28 C -0.16 -1.49 10.05 30.59 0.31 -1.18 16 29 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.13 0.34 7.13 -2.39 -0.02 0.33 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.41 12.13 8.20 -92.71 -0.76 11.37 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 40 H 0.06 3.31 5.59 -2.39 -0.01 3.30 16 41 H 0.25 14.34 8.32 -92.71 -0.77 13.57 16 42 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 43 H 0.07 3.18 6.46 -2.39 -0.02 3.16 16 44 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 47 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 48 H 0.15 0.62 7.18 -2.38 -0.02 0.60 16 49 H 0.09 1.09 7.94 -2.39 -0.02 1.07 16 50 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 52 H 0.09 1.12 7.97 -2.39 -0.02 1.10 16 Total: -1.00 -73.89 429.52 2.76 -71.13 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.15 Total: 30.87 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.51 Total: -1.75 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -5.87 Total: -123.06 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.25 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.89 2.76 -71.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490374677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.451 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds