Wall clock time and date at job start Wed Apr 1 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 N 1.28470 * 124.88303 * 90.02711 * 3 2 1 5 5 C 1.31812 * 110.07270 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.51569 * 180.02562 * 5 4 3 7 7 O 1.21574 * 119.99956 * 179.97438 * 6 5 4 8 8 N 1.34780 * 120.00176 * 359.97271 * 6 5 4 9 9 C 1.47022 * 125.64855 * 0.03270 * 8 6 5 10 10 C 1.54320 * 107.27094 * 181.01823 * 9 8 6 11 11 C 1.55163 * 102.94244 * 22.19070 * 10 9 8 12 12 C 1.53004 * 111.00309 * 82.61101 * 11 10 9 13 13 C 1.52995 * 111.00158 * 206.42276 * 11 10 9 14 14 N 1.46504 * 109.47012 * 180.02562 * 13 11 10 15 15 C 1.36934 * 120.00116 * 180.02562 * 14 13 11 16 16 H 1.08007 * 120.00244 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00275 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00297 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99635 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46879 * 90.00106 * 19 17 15 21 21 H 1.48498 * 109.46684 * 209.99712 * 19 17 15 22 22 H 1.48495 * 109.46944 * 329.99480 * 19 17 15 23 23 C 1.47419 * 125.64633 * 179.71587 * 8 6 5 24 24 C 1.41502 * 106.96429 * 0.02562 * 5 4 3 25 25 C 1.35036 * 124.88786 * 269.72445 * 3 2 1 26 26 C 1.50694 * 126.38279 * 0.02562 * 25 3 2 27 27 C 1.53001 * 117.50139 * 213.62226 * 26 25 3 28 28 C 1.52995 * 60.00128 * 252.51077 * 27 26 25 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.09000 * 109.87616 * 300.43716 * 9 8 6 35 35 H 1.09001 * 109.88306 * 61.59693 * 9 8 6 36 36 H 1.08999 * 110.72248 * 140.55401 * 10 9 8 37 37 H 1.09001 * 110.72224 * 263.65061 * 10 9 8 38 38 H 1.09001 * 109.47032 * 60.00026 * 12 11 10 39 39 H 1.08994 * 109.46639 * 179.97438 * 12 11 10 40 40 H 1.08994 * 109.47010 * 299.99850 * 12 11 10 41 41 H 1.08999 * 109.47507 * 300.00174 * 13 11 10 42 42 H 1.09002 * 109.47242 * 60.00111 * 13 11 10 43 43 H 0.97002 * 119.99973 * 359.97438 * 14 13 11 44 44 H 0.97000 * 120.00035 * 180.02562 * 18 17 15 45 45 H 1.09003 * 110.37149 * 274.74648 * 23 8 6 46 46 H 1.08994 * 110.37200 * 37.07331 * 23 8 6 47 47 H 1.07993 * 127.24725 * 180.02562 * 24 5 4 48 48 H 1.09001 * 115.55492 * 359.33141 * 26 25 3 49 49 H 1.09008 * 117.49493 * 0.02562 * 27 26 25 50 50 H 1.09001 * 117.50209 * 145.01742 * 27 26 25 51 51 H 1.08994 * 117.49659 * 252.50507 * 28 27 26 52 52 H 1.09003 * 117.49314 * 107.48581 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2636 2.0738 1.0539 5 6 2.6887 3.2751 0.7169 6 6 3.0741 4.3620 1.6399 7 8 3.4523 5.4295 1.1978 8 7 3.0066 4.1703 2.9723 9 6 2.5698 2.9350 3.6393 10 6 2.6321 3.1888 5.1602 11 6 2.5595 4.7357 5.2576 12 6 1.1112 5.2228 5.1787 13 6 3.2346 5.2369 6.5358 14 7 3.1463 6.6981 6.5940 15 6 3.6858 7.3749 7.6551 16 1 4.1760 6.8315 8.4494 17 6 3.6026 8.7594 7.7100 18 7 4.1207 9.4100 8.7302 19 14 2.7540 9.6993 6.3366 20 1 1.3115 9.8480 6.6565 21 1 3.3721 11.0427 6.2009 22 1 2.9041 8.9542 5.0609 23 6 3.3648 5.1624 4.0023 24 6 2.7056 3.3256 -0.6971 25 6 2.2807 2.1077 -1.1077 26 6 2.1254 1.6493 -2.5348 27 6 3.1196 2.1921 -3.5633 28 6 1.6716 2.6862 -3.5644 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.5478 2.6963 3.3447 35 1 3.2358 2.1144 3.3727 36 1 1.7805 2.7304 5.6629 37 1 3.5690 2.8171 5.5751 38 1 0.5382 4.7935 6.0006 39 1 1.0892 6.3101 5.2499 40 1 0.6744 4.9115 4.2298 41 1 2.7334 4.8081 7.4036 42 1 4.2821 4.9355 6.5356 43 1 2.7063 7.1862 5.8805 44 1 4.0623 10.3774 8.7688 45 1 4.4351 5.1285 4.2058 46 1 3.0697 6.1624 3.6847 47 1 3.0005 4.1585 -1.3180 48 1 1.7757 0.6251 -2.6643 49 1 3.8863 2.8805 -3.2075 50 1 3.4244 1.5249 -4.3696 51 1 1.0237 2.3440 -4.3713 52 1 1.4855 3.6998 -3.2093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500352257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:44 Heat of formation + Delta-G solvation = 87.569138 kcal Electronic energy + Delta-G solvation = -30905.354827 eV Core-core repulsion = 26908.023992 eV Total energy + Delta-G solvation = -3997.330835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.99323 -39.98816 -37.91316 -37.65555 -35.03139 -34.87591 -32.65949 -30.88817 -30.59868 -30.26430 -29.20752 -26.96152 -26.08201 -24.67938 -23.89817 -23.27952 -22.85229 -22.05548 -21.58211 -20.36047 -19.07964 -18.97041 -17.77701 -17.38317 -16.73655 -16.28941 -15.76891 -15.57004 -15.25415 -15.00240 -14.61351 -14.51323 -14.26156 -14.04071 -13.80856 -13.68012 -13.24881 -13.01857 -12.90707 -12.68308 -12.53562 -12.29717 -12.16791 -12.11319 -12.03420 -11.91425 -11.78755 -11.70998 -11.46729 -11.31632 -11.23106 -10.84565 -10.79539 -10.53118 -10.40678 -10.25328 -10.06334 -9.95272 -9.50812 -9.32311 -9.01621 -8.84470 -8.47216 -7.17321 -5.71498 -3.06592 1.41885 1.80552 2.09414 3.05358 3.38223 3.43914 3.48787 3.50201 3.51983 3.85498 4.01651 4.34092 4.35785 4.37680 4.46519 4.50126 4.62479 4.65346 4.67627 4.74348 4.94446 5.00748 5.09307 5.13040 5.17244 5.25971 5.36797 5.40106 5.42764 5.48514 5.51221 5.58195 5.62278 5.64695 5.74034 5.74279 5.77519 5.90360 5.98597 6.10089 6.15198 6.16387 6.24613 6.28916 6.44480 6.54570 6.55896 6.68424 6.75672 7.57122 7.70993 8.04405 8.25426 8.47546 9.26671 9.99314 10.18928 11.46905 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.002414 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.063986 B =11595.271316 C =12553.328856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.115 3.885 3 N -0.279 5.279 4 N -0.253 5.253 5 C -0.005 4.005 6 C 0.613 3.387 7 O -0.534 6.534 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.122 4.122 11 C -0.082 4.082 12 C -0.130 4.130 13 C 0.175 3.825 14 N -0.755 5.755 15 C -0.242 4.242 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.935 5.935 19 Si 0.879 3.121 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.275 1.275 23 C 0.119 3.881 24 C -0.178 4.178 25 C 0.045 3.955 26 C -0.098 4.098 27 C -0.162 4.162 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.158 0.842 48 H 0.115 0.885 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.102 0.898 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 -25.417 -24.724 36.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 N -0.067 5.067 4 N -0.088 5.088 5 C -0.165 4.165 6 C 0.399 3.601 7 O -0.409 6.409 8 N -0.337 5.337 9 C -0.008 4.008 10 C -0.161 4.161 11 C -0.084 4.084 12 C -0.188 4.188 13 C 0.047 3.953 14 N -0.401 5.401 15 C -0.372 4.372 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.583 5.583 19 Si 0.709 3.291 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.201 1.201 23 C -0.002 4.002 24 C -0.206 4.206 25 C -0.078 4.078 26 C -0.118 4.118 27 C -0.200 4.200 28 C -0.199 4.199 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.176 0.824 48 H 0.132 0.868 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.949 -25.579 -23.865 35.875 hybrid contribution -0.427 1.145 -1.539 1.965 sum -8.376 -24.434 -25.404 36.229 Atomic orbital electron populations 1.22176 0.93411 1.03551 1.03733 1.21967 0.96013 0.77310 1.05241 1.45489 1.46348 1.12390 1.02478 1.73671 1.17276 1.04781 1.13091 1.21789 1.08019 0.92876 0.93786 1.16501 0.78031 0.85465 0.80087 1.90816 1.48017 1.25784 1.76308 1.48312 1.64727 1.16121 1.04505 1.21999 1.00198 0.86477 0.92090 1.22746 1.03208 0.95674 0.94452 1.22051 0.96332 0.94477 0.95504 1.21677 0.94175 1.01999 1.00927 1.20556 0.97003 0.85209 0.92536 1.42768 1.70391 1.01280 1.25657 1.19040 1.29528 0.89857 0.98744 0.89197 1.24649 1.00737 0.96190 0.97490 1.69700 1.50426 1.07418 1.30734 0.86620 0.79659 0.79959 0.82822 1.21075 1.21673 1.20113 1.22437 0.99474 0.92597 0.85726 1.21373 1.07951 0.97736 0.93514 1.20381 1.05888 0.92455 0.89107 1.20266 1.07235 0.99117 0.85167 1.23107 0.93295 1.03532 1.00028 1.23101 0.97698 0.99126 0.99993 0.90019 0.91220 0.91684 0.87875 0.88331 0.91218 0.91337 0.89923 0.90247 0.92100 0.91925 0.93316 0.94884 0.95203 0.80471 0.93107 0.90614 0.90188 0.82391 0.86751 0.87896 0.87992 0.88006 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.24 37.16 0.38 -0.34 16 2 C 0.11 0.57 6.75 -4.04 -0.03 0.54 16 3 N -0.28 -2.58 3.30 -57.11 -0.19 -2.77 16 4 N -0.25 -3.05 9.50 33.42 0.32 -2.73 16 5 C 0.00 -0.07 6.98 -82.76 -0.58 -0.65 16 6 C 0.61 10.40 7.86 -12.39 -0.10 10.30 16 7 O -0.53 -10.81 17.18 5.30 0.09 -10.72 16 8 N -0.60 -9.40 3.31 -171.55 -0.57 -9.97 16 9 C 0.12 1.43 5.22 -3.07 -0.02 1.41 16 10 C -0.12 -1.48 5.91 -24.90 -0.15 -1.62 16 11 C -0.08 -1.29 0.63 -152.24 -0.10 -1.38 16 12 C -0.13 -2.01 8.42 37.16 0.31 -1.70 16 13 C 0.17 3.34 5.25 -4.04 -0.02 3.31 16 14 N -0.75 -18.10 4.98 -59.91 -0.30 -18.40 16 15 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 16 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 17 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.90 13.97 55.49 0.78 -29.12 16 19 Si 0.88 22.91 27.74 -169.99 -4.71 18.20 16 20 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 23 C 0.12 2.04 5.63 -2.41 -0.01 2.03 16 24 C -0.18 -2.16 9.86 -39.36 -0.39 -2.55 16 25 C 0.05 0.43 6.60 -82.21 -0.54 -0.12 16 26 C -0.10 -0.60 5.94 -91.77 -0.55 -1.14 16 27 C -0.16 -0.88 10.05 -26.73 -0.27 -1.14 16 28 C -0.16 -0.88 10.05 -26.73 -0.27 -1.15 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.26 7.10 -51.93 -0.37 -0.11 16 34 H 0.07 0.84 7.66 -51.93 -0.40 0.44 16 35 H 0.07 0.81 7.77 -51.93 -0.40 0.40 16 36 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 37 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.10 6.65 -51.93 -0.35 0.76 16 40 H 0.05 0.70 7.91 -51.93 -0.41 0.29 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 43 H 0.36 8.63 4.09 -40.82 -0.17 8.46 16 44 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 45 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 46 H 0.08 1.55 7.95 -51.93 -0.41 1.14 16 47 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 48 H 0.11 0.46 7.16 -51.93 -0.37 0.09 16 49 H 0.10 0.66 7.95 -51.92 -0.41 0.25 16 50 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.10 0.66 7.97 -51.93 -0.41 0.25 16 LS Contribution 415.98 15.07 6.27 6.27 Total: -1.00 -36.00 415.98 -9.66 -45.66 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.77 Total: 4.81 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.57 Total: -1.23 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.04 Total: -62.99 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.00 -9.66 -45.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500352257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.226 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds