Wall clock time and date at job start Wed Apr 1 2020 04:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 N 1.28470 * 124.88303 * 90.02711 * 3 2 1 5 5 C 1.31812 * 110.07270 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.51569 * 180.02562 * 5 4 3 7 7 O 1.21574 * 119.99956 * 179.97438 * 6 5 4 8 8 N 1.34780 * 120.00176 * 359.97271 * 6 5 4 9 9 C 1.47022 * 125.64855 * 0.03270 * 8 6 5 10 10 C 1.54320 * 107.27094 * 181.01823 * 9 8 6 11 11 C 1.55163 * 102.94244 * 22.19070 * 10 9 8 12 12 C 1.53004 * 111.00309 * 82.61101 * 11 10 9 13 13 C 1.52995 * 111.00158 * 206.42276 * 11 10 9 14 14 N 1.46504 * 109.47012 * 180.02562 * 13 11 10 15 15 C 1.36934 * 120.00116 * 180.02562 * 14 13 11 16 16 H 1.08007 * 120.00244 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00275 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00297 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99635 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46879 * 90.00106 * 19 17 15 21 21 H 1.48498 * 109.46684 * 209.99712 * 19 17 15 22 22 H 1.48495 * 109.46944 * 329.99480 * 19 17 15 23 23 C 1.47419 * 125.64633 * 179.71587 * 8 6 5 24 24 C 1.41502 * 106.96429 * 0.02562 * 5 4 3 25 25 C 1.35036 * 124.88786 * 269.72445 * 3 2 1 26 26 C 1.50694 * 126.38279 * 0.02562 * 25 3 2 27 27 C 1.53001 * 117.50139 * 213.62226 * 26 25 3 28 28 C 1.52995 * 60.00128 * 252.51077 * 27 26 25 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.09000 * 109.87616 * 300.43716 * 9 8 6 35 35 H 1.09001 * 109.88306 * 61.59693 * 9 8 6 36 36 H 1.08999 * 110.72248 * 140.55401 * 10 9 8 37 37 H 1.09001 * 110.72224 * 263.65061 * 10 9 8 38 38 H 1.09001 * 109.47032 * 60.00026 * 12 11 10 39 39 H 1.08994 * 109.46639 * 179.97438 * 12 11 10 40 40 H 1.08994 * 109.47010 * 299.99850 * 12 11 10 41 41 H 1.08999 * 109.47507 * 300.00174 * 13 11 10 42 42 H 1.09002 * 109.47242 * 60.00111 * 13 11 10 43 43 H 0.97002 * 119.99973 * 359.97438 * 14 13 11 44 44 H 0.97000 * 120.00035 * 180.02562 * 18 17 15 45 45 H 1.09003 * 110.37149 * 274.74648 * 23 8 6 46 46 H 1.08994 * 110.37200 * 37.07331 * 23 8 6 47 47 H 1.07993 * 127.24725 * 180.02562 * 24 5 4 48 48 H 1.09001 * 115.55492 * 359.33141 * 26 25 3 49 49 H 1.09008 * 117.49493 * 0.02562 * 27 26 25 50 50 H 1.09001 * 117.50209 * 145.01742 * 27 26 25 51 51 H 1.08994 * 117.49659 * 252.50507 * 28 27 26 52 52 H 1.09003 * 117.49314 * 107.48581 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2636 2.0738 1.0539 5 6 2.6887 3.2751 0.7169 6 6 3.0741 4.3620 1.6399 7 8 3.4523 5.4295 1.1978 8 7 3.0066 4.1703 2.9723 9 6 2.5698 2.9350 3.6393 10 6 2.6321 3.1888 5.1602 11 6 2.5595 4.7357 5.2576 12 6 1.1112 5.2228 5.1787 13 6 3.2346 5.2369 6.5358 14 7 3.1463 6.6981 6.5940 15 6 3.6858 7.3749 7.6551 16 1 4.1760 6.8315 8.4494 17 6 3.6026 8.7594 7.7100 18 7 4.1207 9.4100 8.7302 19 14 2.7540 9.6993 6.3366 20 1 1.3115 9.8480 6.6565 21 1 3.3721 11.0427 6.2009 22 1 2.9041 8.9542 5.0609 23 6 3.3648 5.1624 4.0023 24 6 2.7056 3.3256 -0.6971 25 6 2.2807 2.1077 -1.1077 26 6 2.1254 1.6493 -2.5348 27 6 3.1196 2.1921 -3.5633 28 6 1.6716 2.6862 -3.5644 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.5478 2.6963 3.3447 35 1 3.2358 2.1144 3.3727 36 1 1.7805 2.7304 5.6629 37 1 3.5690 2.8171 5.5751 38 1 0.5382 4.7935 6.0006 39 1 1.0892 6.3101 5.2499 40 1 0.6744 4.9115 4.2298 41 1 2.7334 4.8081 7.4036 42 1 4.2821 4.9355 6.5356 43 1 2.7063 7.1862 5.8805 44 1 4.0623 10.3774 8.7688 45 1 4.4351 5.1285 4.2058 46 1 3.0697 6.1624 3.6847 47 1 3.0005 4.1585 -1.3180 48 1 1.7757 0.6251 -2.6643 49 1 3.8863 2.8805 -3.2075 50 1 3.4244 1.5249 -4.3696 51 1 1.0237 2.3440 -4.3713 52 1 1.4855 3.6998 -3.2093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500352257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:43 Heat of formation + Delta-G solvation = 64.780735 kcal Electronic energy + Delta-G solvation = -30906.343007 eV Core-core repulsion = 26908.023992 eV Total energy + Delta-G solvation = -3998.319014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.81110 -41.24773 -39.24879 -38.14731 -36.66390 -35.59145 -34.38511 -32.71921 -31.42614 -31.01644 -30.45762 -28.20742 -27.66352 -25.62577 -24.84600 -24.31684 -23.38273 -23.24505 -22.70376 -21.17401 -20.49550 -20.13600 -19.42010 -18.27149 -17.77504 -17.43019 -16.76502 -16.61180 -16.52630 -15.98333 -15.78107 -15.58286 -15.44756 -15.21578 -15.06432 -14.68284 -14.60626 -14.45627 -13.96663 -13.83789 -13.58008 -13.48256 -13.28637 -13.06940 -13.01857 -12.88155 -12.78220 -12.76815 -12.42244 -12.29371 -12.21321 -12.04532 -11.97277 -11.88368 -11.77072 -11.56187 -11.53192 -11.35916 -11.29929 -10.99427 -10.20818 -9.76500 -9.70792 -9.28733 -8.03945 -5.35355 0.44196 0.94535 1.33997 1.36650 1.41555 1.42516 1.90219 2.24423 2.45143 3.01720 3.09619 3.26796 3.34196 3.43698 3.56100 3.69136 3.77967 3.91794 3.95852 3.99246 4.01472 4.08625 4.22631 4.28639 4.29145 4.32416 4.34818 4.44805 4.58749 4.67769 4.70997 4.75846 4.79111 4.80592 4.83870 4.89449 4.92380 5.01437 5.02923 5.06466 5.11224 5.15289 5.19699 5.23208 5.24492 5.25606 5.32775 5.41165 5.76098 5.81729 6.20710 6.37471 6.77092 7.03423 7.07156 7.84446 8.01528 9.17674 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.002414 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.063986 B =11595.271316 C =12553.328856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.268 5.268 4 N -0.252 5.252 5 C -0.036 4.036 6 C 0.605 3.395 7 O -0.583 6.583 8 N -0.602 5.602 9 C 0.120 3.880 10 C -0.109 4.109 11 C -0.074 4.074 12 C -0.127 4.127 13 C 0.171 3.829 14 N -0.759 5.759 15 C -0.225 4.225 16 H 0.064 0.936 17 C -0.060 4.060 18 N -0.981 5.981 19 Si 0.942 3.058 20 H -0.274 1.274 21 H -0.295 1.295 22 H -0.265 1.265 23 C 0.119 3.881 24 C -0.204 4.204 25 C 0.060 3.940 26 C -0.102 4.102 27 C -0.160 4.160 28 C -0.160 4.160 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.363 0.637 44 H 0.257 0.743 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.149 0.851 48 H 0.147 0.853 49 H 0.085 0.915 50 H 0.125 0.875 51 H 0.125 0.875 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 -29.527 -27.018 41.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.057 5.057 4 N -0.089 5.089 5 C -0.194 4.194 6 C 0.394 3.606 7 O -0.462 6.462 8 N -0.334 5.334 9 C -0.002 4.002 10 C -0.148 4.148 11 C -0.075 4.075 12 C -0.184 4.184 13 C 0.045 3.955 14 N -0.405 5.405 15 C -0.356 4.356 16 H 0.082 0.918 17 C -0.251 4.251 18 N -0.632 5.632 19 Si 0.770 3.230 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.190 1.190 23 C -0.003 4.003 24 C -0.232 4.232 25 C -0.064 4.064 26 C -0.121 4.121 27 C -0.198 4.198 28 C -0.198 4.198 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.197 0.803 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.167 0.833 48 H 0.164 0.836 49 H 0.104 0.896 50 H 0.143 0.857 51 H 0.143 0.857 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.884 -29.771 -26.161 40.846 hybrid contribution 0.186 2.251 -0.846 2.412 sum -9.698 -27.520 -27.007 39.759 Atomic orbital electron populations 1.22156 0.92609 1.04982 1.02583 1.22487 0.96615 0.75004 1.07419 1.45999 1.44487 1.13453 1.01755 1.73573 1.17106 1.04015 1.14221 1.21448 1.10752 0.93286 0.93946 1.16982 0.77298 0.85663 0.80682 1.90766 1.50331 1.27877 1.77224 1.48372 1.64198 1.16771 1.04060 1.22142 1.00903 0.85272 0.91900 1.22770 1.05196 0.92379 0.94408 1.21916 0.95722 0.97215 0.92638 1.21645 0.94151 1.00391 1.02214 1.20741 0.97534 0.82394 0.94804 1.42832 1.69891 1.03388 1.24343 1.19063 1.27777 0.89973 0.98834 0.91779 1.25361 1.02450 0.97343 0.99984 1.69854 1.52795 1.07540 1.33029 0.85603 0.78848 0.78207 0.80335 1.20027 1.22175 1.19014 1.22288 0.99103 0.91863 0.87079 1.21452 1.09704 0.99164 0.92909 1.20759 1.03633 0.91293 0.90737 1.20497 1.07977 1.00690 0.82933 1.23164 0.92869 1.03505 1.00234 1.23154 0.98216 0.98204 1.00217 0.87276 0.93248 0.91934 0.86847 0.85134 0.90237 0.90185 0.87006 0.89143 0.90256 0.94512 0.92351 0.93820 0.95244 0.80343 0.93385 0.91733 0.93242 0.83279 0.83567 0.89633 0.85659 0.85710 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.24 71.98 0.74 -0.07 16 2 C 0.10 0.62 6.75 86.38 0.58 1.20 16 3 N -0.27 -4.32 3.30 -334.60 -1.10 -5.43 16 4 N -0.25 -5.72 9.50 -48.17 -0.46 -6.18 16 5 C -0.04 -1.05 6.98 42.46 0.30 -0.75 16 6 C 0.61 21.37 7.86 86.75 0.68 22.05 16 7 O -0.58 -25.20 17.18 -3.95 -0.07 -25.27 16 8 N -0.60 -18.83 3.31 -814.92 -2.70 -21.53 16 9 C 0.12 2.72 5.22 86.73 0.45 3.17 16 10 C -0.11 -2.32 5.91 31.78 0.19 -2.13 16 11 C -0.07 -2.21 0.63 -50.71 -0.03 -2.24 16 12 C -0.13 -3.72 8.42 71.98 0.61 -3.12 16 13 C 0.17 6.42 5.25 86.38 0.45 6.87 16 14 N -0.76 -36.50 4.98 -343.45 -1.71 -38.21 16 15 C -0.23 -13.14 10.47 84.03 0.88 -12.26 16 16 H 0.06 4.02 8.06 -2.91 -0.02 3.99 16 17 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 18 N -0.98 -64.45 13.97 21.65 0.30 -64.15 16 19 Si 0.94 48.38 27.74 68.60 1.90 50.29 16 20 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 22 H -0.26 -12.98 6.52 99.48 0.65 -12.33 16 23 C 0.12 4.16 5.63 86.93 0.49 4.65 16 24 C -0.20 -5.08 9.86 22.41 0.22 -4.86 16 25 C 0.06 1.04 6.60 41.40 0.27 1.31 16 26 C -0.10 -0.93 5.94 -11.54 -0.07 -1.00 16 27 C -0.16 -1.39 10.05 30.59 0.31 -1.08 16 28 C -0.16 -1.40 10.05 30.59 0.31 -1.10 16 29 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.13 0.01 7.10 -2.39 -0.02 -0.01 16 34 H 0.08 1.70 7.66 -2.39 -0.02 1.68 16 35 H 0.08 1.68 7.77 -2.39 -0.02 1.67 16 36 H 0.11 1.80 8.04 -2.39 -0.02 1.79 16 37 H 0.09 1.77 8.04 -2.39 -0.02 1.75 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.26 6.65 -2.39 -0.02 1.25 16 40 H 0.06 1.59 7.91 -2.39 -0.02 1.58 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.12 8.07 -2.39 -0.02 1.11 16 43 H 0.36 17.36 4.09 -92.71 -0.38 16.98 16 44 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 45 H 0.06 2.35 7.99 -2.39 -0.02 2.33 16 46 H 0.05 2.01 7.95 -2.39 -0.02 1.99 16 47 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 48 H 0.15 0.42 7.16 -2.39 -0.02 0.41 16 49 H 0.09 1.06 7.95 -2.38 -0.02 1.04 16 50 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.08 1.07 7.97 -2.39 -0.02 1.05 16 Total: -1.00 -82.72 415.98 3.48 -79.24 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.47 Total: 23.78 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.84 Total: 7.46 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -5.67 Total: -135.49 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.07 Total: -25.27 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.90 Total: 50.29 kcal Total: -82.72 3.48 -79.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500352257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.020 kcal (2) G-P(sol) polarization free energy of solvation -82.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds