Wall clock time and date at job start Wed Apr 1 2020 04:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47112 * 2 1 4 4 N 1.39927 * 125.75861 * 265.13232 * 3 2 1 5 5 C 1.30452 * 108.90454 * 179.73186 * 4 3 2 6 6 C 1.41302 * 108.01523 * 0.38559 * 5 4 3 7 7 C 1.47422 * 126.40923 * 179.88361 * 6 5 4 8 8 O 1.21610 * 119.99939 * 173.02596 * 7 6 5 9 9 N 1.34770 * 120.00705 * 353.01948 * 7 6 5 10 10 C 1.48118 * 127.03860 * 175.34727 * 9 7 6 11 11 C 1.54943 * 103.25512 * 140.67755 * 10 9 7 12 12 H 1.08997 * 110.74211 * 279.04401 * 11 10 9 13 13 C 1.52995 * 110.74028 * 155.71489 * 11 10 9 14 14 C 1.54617 * 102.83842 * 37.38008 * 11 10 9 15 15 H 1.08996 * 110.41820 * 97.08899 * 14 11 10 16 16 C 1.52998 * 110.32836 * 219.26087 * 14 11 10 17 17 N 1.46502 * 109.47510 * 182.07434 * 16 14 11 18 18 C 1.36928 * 120.00164 * 179.71928 * 17 16 14 19 19 H 1.08002 * 120.00125 * 0.27855 * 18 17 16 20 20 C 1.38816 * 120.00341 * 180.27163 * 18 17 16 21 21 N 1.31622 * 119.99555 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00472 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47200 * 120.00275 * 22 20 18 25 25 H 1.48500 * 109.47575 * 240.00353 * 22 20 18 26 26 C 1.47494 * 127.03237 * 355.31428 * 9 7 6 27 27 C 1.34266 * 125.74945 * 85.10727 * 3 2 1 28 28 C 1.50696 * 126.29568 * 0.02562 * 27 3 2 29 29 C 1.52997 * 117.50147 * 128.44822 * 28 27 3 30 30 C 1.53000 * 60.00158 * 252.51385 * 29 28 27 31 31 H 1.08998 * 109.47263 * 304.98361 * 1 2 3 32 32 H 1.08999 * 109.46921 * 64.98478 * 1 2 3 33 33 H 1.08997 * 109.46795 * 184.97661 * 1 2 3 34 34 H 1.08997 * 109.47201 * 240.00252 * 2 1 3 35 35 H 1.09000 * 109.47205 * 120.00168 * 2 1 3 36 36 H 1.07996 * 125.99624 * 180.25783 * 5 4 3 37 37 H 1.08996 * 110.66181 * 259.11997 * 10 9 7 38 38 H 1.08997 * 110.65991 * 22.07189 * 10 9 7 39 39 H 1.09002 * 109.47311 * 306.58284 * 13 11 10 40 40 H 1.09004 * 109.47191 * 66.58524 * 13 11 10 41 41 H 1.09004 * 109.47310 * 186.58039 * 13 11 10 42 42 H 1.08997 * 109.47557 * 62.06714 * 16 14 11 43 43 H 1.09006 * 109.46900 * 302.07425 * 16 14 11 44 44 H 0.96997 * 119.99340 * 0.02562 * 17 16 14 45 45 H 0.96996 * 120.00259 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.91351 * 86.11462 * 26 9 7 47 47 H 1.09002 * 109.91009 * 324.83555 * 26 9 7 48 48 H 1.08996 * 115.54556 * 274.16020 * 28 27 3 49 49 H 1.09002 * 117.49651 * 0.02562 * 29 28 27 50 50 H 1.09004 * 117.49959 * 145.02154 * 29 28 27 51 51 H 1.09004 * 117.49588 * 252.51162 * 30 29 28 52 52 H 1.08991 * 117.49944 * 107.49044 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3817 2.1200 -1.1314 5 6 2.7622 3.3097 -0.7550 6 6 2.6635 3.3750 0.6530 7 6 2.9955 4.5346 1.5006 8 8 2.7477 4.5085 2.6909 9 7 3.5736 5.6236 0.9565 10 6 3.8842 6.9025 1.6363 11 6 5.2624 7.2931 1.0458 12 1 6.0648 6.7530 1.5483 13 6 5.4832 8.8041 1.1389 14 6 5.1428 6.8472 -0.4299 15 1 4.8662 7.6917 -1.0610 16 6 6.4611 6.2362 -0.9091 17 7 6.3429 5.8660 -2.3216 18 6 7.4071 5.3019 -2.9729 19 1 8.3322 5.1257 -2.4441 20 6 7.2970 4.9564 -4.3129 21 7 6.1697 5.1714 -4.9574 22 14 8.7485 4.1862 -5.2012 23 1 9.8894 4.0506 -4.2604 24 1 8.3634 2.8446 -5.7081 25 1 9.1466 5.0505 -6.3413 26 6 4.0271 5.7857 -0.4376 27 6 2.1922 2.1518 1.0857 28 6 1.9225 1.7544 2.5141 29 6 3.0411 1.9797 3.5333 30 6 2.6992 0.5609 3.0739 31 1 -0.3634 0.5892 0.8420 32 1 -0.3633 0.4346 -0.9313 33 1 -0.3633 -1.0238 0.0891 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0962 4.1046 -1.4053 37 1 3.1353 7.6572 1.3966 38 1 3.9519 6.7583 2.7145 39 1 4.6409 9.3233 0.6817 40 1 5.5646 9.0956 2.1861 41 1 6.4015 9.0702 0.6154 42 1 6.6859 5.3482 -0.3183 43 1 7.2635 6.9644 -0.7902 44 1 5.5122 6.0247 -2.7966 45 1 6.0928 4.9304 -5.8938 46 1 3.1986 6.1222 -1.0608 47 1 4.4173 4.8398 -0.8133 48 1 0.8961 1.8912 2.8543 49 1 3.9720 2.4159 3.1707 50 1 2.7508 2.2651 4.5444 51 1 2.1839 -0.0871 3.7829 52 1 3.4052 0.0633 2.4092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501145897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:16 Heat of formation + Delta-G solvation = 65.069944 kcal Electronic energy + Delta-G solvation = -31642.796877 eV Core-core repulsion = 27644.490404 eV Total energy + Delta-G solvation = -3998.306473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.68269 -40.84133 -38.89356 -37.93313 -36.33574 -35.53290 -34.09238 -33.17053 -31.34178 -30.79599 -30.45556 -27.55329 -27.12341 -25.30199 -25.03569 -24.11335 -23.44529 -23.00342 -21.98350 -21.28326 -21.01847 -19.75628 -19.13160 -18.26863 -17.35530 -17.10163 -16.74225 -16.62793 -16.45934 -15.69484 -15.63117 -15.59999 -15.27292 -15.23250 -15.05342 -14.84991 -14.60348 -14.01729 -13.88469 -13.58402 -13.46257 -13.28015 -13.05927 -13.02621 -12.98665 -12.80296 -12.74515 -12.53142 -12.47968 -12.33661 -12.15426 -12.09054 -11.92354 -11.75957 -11.52925 -11.48510 -11.33451 -11.18909 -10.94561 -10.75879 -10.45232 -9.83833 -9.49096 -8.96976 -7.93287 -5.20888 0.44251 1.08468 1.31806 1.46794 1.47513 1.56920 2.04913 2.40294 2.56497 2.76408 3.31989 3.34418 3.40554 3.54801 3.63119 3.79196 3.86565 3.92890 3.99522 4.01346 4.06996 4.17115 4.24325 4.26864 4.27762 4.40104 4.47296 4.57606 4.58576 4.63681 4.71321 4.76041 4.78183 4.79797 4.82323 4.85689 4.94886 4.98163 5.07110 5.09961 5.14892 5.17511 5.22534 5.23040 5.29092 5.36192 5.39087 5.51191 5.61233 5.87340 6.29081 6.48794 6.57029 7.24213 7.36625 8.11139 8.36005 9.29845 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.003768 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.234719 B = 7429.348452 C = 9792.146966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 N -0.349 5.349 4 N -0.324 5.324 5 C 0.068 3.932 6 C -0.313 4.313 7 C 0.610 3.390 8 O -0.563 6.563 9 N -0.618 5.618 10 C 0.114 3.886 11 C -0.089 4.089 12 H 0.075 0.925 13 C -0.134 4.134 14 C -0.094 4.094 15 H 0.093 0.907 16 C 0.165 3.835 17 N -0.740 5.740 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.068 4.068 21 N -0.963 5.963 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.296 1.296 25 H -0.291 1.291 26 C 0.104 3.896 27 C 0.186 3.814 28 C -0.109 4.109 29 C -0.130 4.130 30 C -0.155 4.155 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.193 0.807 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.008 0.992 43 H 0.026 0.974 44 H 0.377 0.623 45 H 0.250 0.750 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.140 0.860 49 H 0.066 0.934 50 H 0.112 0.888 51 H 0.136 0.864 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.914 -5.717 18.428 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.128 5.128 4 N -0.144 5.144 5 C -0.118 4.118 6 C -0.327 4.327 7 C 0.402 3.598 8 O -0.444 6.444 9 N -0.351 5.351 10 C -0.007 4.007 11 C -0.109 4.109 12 H 0.094 0.906 13 C -0.191 4.191 14 C -0.113 4.113 15 H 0.112 0.888 16 C 0.039 3.961 17 N -0.383 5.383 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.261 4.261 21 N -0.614 5.614 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.224 1.224 25 H -0.218 1.218 26 C -0.020 4.020 27 C 0.052 3.948 28 C -0.129 4.129 29 C -0.168 4.168 30 C -0.192 4.192 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.209 0.791 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.044 0.956 44 H 0.209 0.791 45 H 0.059 0.941 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.158 0.842 49 H 0.085 0.915 50 H 0.130 0.870 51 H 0.154 0.846 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.148 -6.836 18.041 22.798 hybrid contribution 0.795 0.366 -0.999 1.328 sum -11.353 -6.470 17.042 21.475 Atomic orbital electron populations 1.22137 0.92485 1.04911 1.02350 1.22251 0.96687 0.75783 1.06145 1.48960 1.48016 1.13085 1.02721 1.77228 1.22330 1.05916 1.08877 1.24695 0.96753 0.95651 0.94697 1.20047 1.21997 0.97308 0.93395 1.16852 0.76324 0.80649 0.85994 1.90699 1.56621 1.81748 1.15312 1.48551 1.60009 1.14133 1.12372 1.22628 0.96065 0.83979 0.98059 1.22222 0.96831 0.98433 0.93385 0.90618 1.21696 1.02452 0.92094 1.02890 1.22277 0.93869 0.97572 0.97603 0.88839 1.20780 0.95315 0.95606 0.84401 1.42514 1.14233 1.74205 1.07393 1.19582 0.93472 1.31369 0.93085 0.91166 1.25436 0.99590 1.03389 0.97701 1.69790 1.26490 1.55173 1.09914 0.85195 0.79434 0.77358 0.78532 1.19348 1.22364 1.21816 1.22421 0.96879 0.99957 0.82694 1.20903 0.93868 0.89556 0.90469 1.20516 0.99834 1.06478 0.86039 1.22677 0.97413 0.98029 0.98708 1.23293 1.01843 0.90980 1.03038 0.91927 0.93374 0.87181 0.88156 0.86078 0.79087 0.89439 0.89866 0.91434 0.90775 0.92377 0.97433 0.95624 0.79084 0.94061 0.90730 0.91400 0.84233 0.91515 0.86996 0.84585 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.24 71.98 0.74 -1.45 16 2 C 0.11 1.91 6.87 86.38 0.59 2.50 16 3 N -0.35 -9.52 3.58 -333.01 -1.19 -10.71 16 4 N -0.32 -11.38 12.50 -56.27 -0.70 -12.08 16 5 C 0.07 2.42 10.35 85.65 0.89 3.31 16 6 C -0.31 -10.36 6.04 -20.15 -0.12 -10.48 16 7 C 0.61 20.39 7.76 86.66 0.67 21.06 16 8 O -0.56 -19.59 13.92 -4.06 -0.06 -19.64 16 9 N -0.62 -18.76 3.29 -813.25 -2.68 -21.43 16 10 C 0.11 2.80 6.55 86.73 0.57 3.37 16 11 C -0.09 -2.15 3.21 -9.58 -0.03 -2.18 16 12 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 13 C -0.13 -2.51 9.16 71.98 0.66 -1.85 16 14 C -0.09 -2.84 2.64 -9.91 -0.03 -2.87 16 15 H 0.09 2.76 7.85 -2.39 -0.02 2.74 16 16 C 0.17 6.50 5.34 86.38 0.46 6.96 16 17 N -0.74 -36.77 5.33 -343.45 -1.83 -38.60 16 18 C -0.24 -13.58 9.99 84.04 0.84 -12.74 16 19 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.96 -58.43 13.06 21.65 0.28 -58.14 16 22 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 26 C 0.10 3.27 4.58 86.53 0.40 3.67 16 27 C 0.19 5.21 6.43 42.14 0.27 5.48 16 28 C -0.11 -2.27 5.19 -11.54 -0.06 -2.33 16 29 C -0.13 -2.81 8.09 30.59 0.25 -2.56 16 30 C -0.15 -2.31 9.01 30.60 0.28 -2.04 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.44 6.40 -2.39 -0.02 1.42 16 36 H 0.19 6.85 4.96 -2.91 -0.01 6.83 16 37 H 0.09 1.85 8.02 -2.39 -0.02 1.83 16 38 H 0.08 2.04 7.81 -2.39 -0.02 2.02 16 39 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.03 1.00 8.14 -2.38 -0.02 0.99 16 44 H 0.38 19.55 7.51 -92.71 -0.70 18.85 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.07 2.22 7.88 -2.39 -0.02 2.20 16 47 H 0.07 2.54 5.19 -2.39 -0.01 2.53 16 48 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.07 1.86 7.73 -2.39 -0.02 1.84 16 50 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 51 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.09 1.44 7.81 -2.39 -0.02 1.42 16 Total: -1.00 -73.02 412.33 2.91 -70.10 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.22 Total: 37.53 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 6.84 Total: 4.38 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -6.12 Total: -140.96 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.06 Total: -19.64 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -73.02 2.91 -70.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501145897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.175 kcal (2) G-P(sol) polarization free energy of solvation -73.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds