Wall clock time and date at job start Wed Apr 1 2020 04:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47211 * 2 1 4 4 N 1.28468 * 124.88495 * 89.96983 * 3 2 1 5 5 C 1.31814 * 110.06872 * 180.02562 * 4 3 2 6 6 C 1.47712 * 126.51243 * 179.97438 * 5 4 3 7 7 O 1.21578 * 119.99595 * 186.95445 * 6 5 4 8 8 N 1.34778 * 120.00395 * 6.95515 * 6 5 4 9 9 C 1.46924 * 120.62719 * 6.51626 * 8 6 5 10 10 C 1.53625 * 108.54518 * 126.36702 * 9 8 6 11 11 C 1.53041 * 109.23998 * 54.85357 * 10 9 8 12 12 C 1.53044 * 109.53612 * 298.51049 * 11 10 9 13 13 C 1.46925 * 120.63060 * 186.79032 * 8 6 5 14 14 H 1.09002 * 109.58378 * 113.79830 * 13 8 6 15 15 C 1.52996 * 109.58732 * 353.37728 * 13 8 6 16 16 N 1.46503 * 109.47445 * 68.49303 * 15 13 8 17 17 C 1.36931 * 120.00267 * 174.67692 * 16 15 13 18 18 H 1.08007 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00187 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99981 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00092 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46750 * 90.00430 * 21 19 17 23 23 H 1.48500 * 109.47424 * 210.00535 * 21 19 17 24 24 H 1.48504 * 109.46883 * 330.00524 * 21 19 17 25 25 C 1.41492 * 106.96648 * 359.97438 * 5 4 3 26 26 C 1.35035 * 124.88313 * 269.99923 * 3 2 1 27 27 C 1.50697 * 126.38297 * 359.97438 * 26 3 2 28 28 C 1.53009 * 117.49978 * 213.74747 * 27 26 3 29 29 C 1.53002 * 117.49823 * 145.09220 * 27 26 3 30 30 H 1.08991 * 109.47371 * 300.00019 * 1 2 3 31 31 H 1.09005 * 109.46902 * 60.00716 * 1 2 3 32 32 H 1.09010 * 109.47056 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47411 * 239.99367 * 2 1 3 34 34 H 1.09000 * 109.46801 * 119.99744 * 2 1 3 35 35 H 1.09003 * 109.58555 * 246.19842 * 9 8 6 36 36 H 1.08995 * 109.58892 * 6.62158 * 9 8 6 37 37 H 1.08997 * 109.62956 * 294.86542 * 10 9 8 38 38 H 1.08996 * 109.45951 * 174.73743 * 10 9 8 39 39 H 1.09004 * 109.45911 * 178.49336 * 11 10 9 40 40 H 1.08997 * 109.45464 * 58.52334 * 11 10 9 41 41 H 1.08999 * 109.50262 * 301.41149 * 12 11 10 42 42 H 1.09006 * 109.52297 * 181.33596 * 12 11 10 43 43 H 1.09005 * 109.47004 * 188.49262 * 15 13 8 44 44 H 1.09009 * 109.47153 * 308.49265 * 15 13 8 45 45 H 0.96996 * 119.99721 * 354.67155 * 16 15 13 46 46 H 0.97005 * 120.00186 * 179.97438 * 20 19 17 47 47 H 1.08001 * 127.25239 * 179.97438 * 25 5 4 48 48 H 1.08999 * 115.55725 * 359.42291 * 27 26 3 49 49 H 1.08999 * 117.49286 * 0.02562 * 28 27 26 50 50 H 1.08999 * 117.49784 * 145.01934 * 28 27 26 51 51 H 1.09008 * 117.50086 * 214.98014 * 29 27 26 52 52 H 1.09002 * 117.49908 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2628 2.0741 1.0538 5 6 2.6872 3.2756 0.7168 6 6 3.0705 4.3633 1.6397 7 8 3.3260 5.4690 1.2034 8 7 3.1371 4.1301 2.9655 9 6 2.9714 2.7699 3.4955 10 6 4.1797 2.4417 4.3856 11 6 4.3223 3.5217 5.4606 12 6 4.5690 4.8773 4.7945 13 6 3.3707 5.2322 3.9086 14 1 2.4865 5.3751 4.5299 15 6 3.6689 6.5167 3.1328 16 7 2.4599 6.9555 2.4314 17 6 2.4543 8.1467 1.7561 18 1 3.3411 8.7630 1.7408 19 6 1.3086 8.5627 1.0920 20 7 1.3034 9.7075 0.4425 21 14 -0.2255 7.4972 1.1190 22 1 -1.0662 7.8695 2.2851 23 1 -0.9956 7.7064 -0.1334 24 1 0.1658 6.0688 1.2266 25 6 2.7058 3.3254 -0.6972 26 6 2.2758 2.1093 -1.1077 27 6 2.1150 1.6528 -2.5349 28 6 3.1065 2.1954 -3.5662 29 6 1.6584 2.6912 -3.5615 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0553 2.7160 4.0838 36 1 2.9203 2.0598 2.6701 37 1 5.0843 2.4112 3.7784 38 1 4.0279 1.4729 4.8613 39 1 5.1626 3.2782 6.1108 40 1 3.4076 3.5687 6.0515 41 1 5.4701 4.8239 4.1835 42 1 4.6941 5.6424 5.5609 43 1 3.9889 7.2942 3.8266 44 1 4.4611 6.3279 2.4081 45 1 1.6633 6.4022 2.4454 46 1 0.5028 9.9980 -0.0219 47 1 3.0000 4.1585 -1.3182 48 1 1.7640 0.6290 -2.6644 49 1 3.8754 2.8822 -3.2122 50 1 3.4076 1.5286 -4.3742 51 1 1.0072 2.3505 -4.3666 52 1 1.4739 3.7045 -3.2046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661926318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:13 Heat of formation + Delta-G solvation = 108.778755 kcal Electronic energy + Delta-G solvation = -32552.379572 eV Core-core repulsion = 28555.968455 eV Total energy + Delta-G solvation = -3996.411117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.79923 -41.34476 -38.20443 -38.17600 -36.61106 -35.52207 -33.89571 -33.73929 -32.00765 -31.36930 -30.77790 -27.98961 -26.19969 -25.25893 -24.86586 -24.04306 -23.30366 -23.19148 -22.56533 -21.59946 -20.90925 -20.15233 -19.32176 -18.25680 -17.55616 -17.08001 -16.85533 -16.65620 -16.10943 -15.94067 -15.77464 -15.53146 -15.38921 -15.08721 -15.00805 -14.84797 -14.58747 -14.43230 -14.16889 -13.81879 -13.74842 -13.47983 -13.40718 -13.06059 -12.94199 -12.83112 -12.78290 -12.46359 -12.33993 -12.30522 -12.20562 -12.00428 -11.98711 -11.84620 -11.73877 -11.45720 -11.42988 -11.00409 -10.94435 -10.19153 -10.08428 -9.74109 -9.53692 -8.92402 -7.98241 -5.20288 0.55755 0.99617 1.24106 1.29612 1.37077 1.46843 2.09890 2.46308 2.48618 2.98651 3.21260 3.33384 3.44979 3.61701 3.68284 3.87217 3.95756 3.97659 3.99041 4.02023 4.05545 4.10908 4.26411 4.29480 4.32641 4.33169 4.40100 4.50927 4.59186 4.68338 4.75523 4.76769 4.81210 4.84545 4.88987 4.98213 4.99341 5.05258 5.07852 5.13872 5.14774 5.20423 5.21631 5.22419 5.28254 5.36890 5.49852 5.75883 5.79255 5.95857 6.25286 6.52037 6.90208 7.13070 7.41440 7.92149 8.10694 9.25512 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.005151 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.434719 B = 5434.404063 C = 7734.688408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.273 5.273 4 N -0.259 5.259 5 C -0.029 4.029 6 C 0.553 3.447 7 O -0.504 6.504 8 N -0.603 5.603 9 C 0.085 3.915 10 C -0.124 4.124 11 C -0.112 4.112 12 C -0.119 4.119 13 C 0.142 3.858 14 H 0.072 0.928 15 C 0.164 3.836 16 N -0.723 5.723 17 C -0.193 4.193 18 H 0.051 0.949 19 C -0.069 4.069 20 N -0.991 5.991 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.281 1.281 25 C -0.215 4.215 26 C 0.062 3.938 27 C -0.096 4.096 28 C -0.155 4.155 29 C -0.170 4.170 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.354 0.646 46 H 0.253 0.747 47 H 0.133 0.867 48 H 0.153 0.847 49 H 0.080 0.920 50 H 0.133 0.867 51 H 0.128 0.872 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 -31.997 1.055 32.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 N -0.061 5.061 4 N -0.095 5.095 5 C -0.187 4.187 6 C 0.338 3.662 7 O -0.375 6.375 8 N -0.339 5.339 9 C -0.038 4.038 10 C -0.163 4.163 11 C -0.149 4.149 12 C -0.157 4.157 13 C 0.039 3.961 14 H 0.090 0.910 15 C 0.038 3.962 16 N -0.367 5.367 17 C -0.325 4.325 18 H 0.069 0.931 19 C -0.259 4.259 20 N -0.644 5.644 21 Si 0.782 3.218 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.208 1.208 25 C -0.243 4.243 26 C -0.064 4.064 27 C -0.115 4.115 28 C -0.192 4.192 29 C -0.208 4.208 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.187 0.813 46 H 0.062 0.938 47 H 0.151 0.849 48 H 0.171 0.829 49 H 0.099 0.901 50 H 0.151 0.849 51 H 0.147 0.853 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.138 -32.008 1.714 32.125 hybrid contribution -0.836 1.106 -0.982 1.699 sum 1.302 -30.902 0.731 30.938 Atomic orbital electron populations 1.22176 0.93056 1.04994 1.02276 1.22491 0.96305 0.75037 1.07620 1.46099 1.44776 1.13473 1.01723 1.73245 1.18722 1.04205 1.13375 1.22008 1.08911 0.93456 0.94324 1.17622 0.79853 0.86125 0.82571 1.91190 1.47120 1.22116 1.77075 1.47870 1.72068 1.09669 1.04267 1.22647 0.98446 0.82381 1.00290 1.21954 0.97261 0.99962 0.97073 1.21510 1.03112 0.92845 0.97466 1.21861 0.95977 0.99476 0.98430 1.21531 0.99233 0.85334 0.90047 0.91029 1.20938 0.89886 0.92774 0.92552 1.42583 1.11364 1.21058 1.61674 1.18992 0.97118 0.94480 1.21895 0.93088 1.25221 1.00871 0.98631 1.01159 1.69869 1.29252 1.23869 1.41444 0.85420 0.80761 0.78608 0.76980 1.20089 1.22174 1.20760 1.21407 1.10320 0.98940 0.93663 1.20699 1.03533 0.91259 0.90874 1.20517 1.07652 1.00560 0.82816 1.23159 0.92445 1.03319 1.00285 1.23147 0.98873 0.97951 1.00795 0.93648 0.92405 0.86833 0.84976 0.86394 0.91730 0.86020 0.92730 0.88306 0.89519 0.91029 0.92276 0.89324 0.95514 0.95600 0.81339 0.93768 0.84861 0.82916 0.90110 0.84906 0.85342 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.24 71.98 0.74 -1.01 16 2 C 0.10 1.12 6.74 86.38 0.58 1.70 16 3 N -0.27 -6.25 3.30 -334.60 -1.10 -7.35 16 4 N -0.26 -7.69 8.45 -48.18 -0.41 -8.10 16 5 C -0.03 -1.10 6.83 42.45 0.29 -0.81 16 6 C 0.55 24.00 7.02 86.75 0.61 24.61 16 7 O -0.50 -26.89 10.72 -3.96 -0.04 -26.94 16 8 N -0.60 -21.35 2.97 -797.73 -2.37 -23.71 16 9 C 0.08 2.20 6.15 86.51 0.53 2.73 16 10 C -0.12 -2.41 6.10 30.82 0.19 -2.22 16 11 C -0.11 -2.09 5.88 30.62 0.18 -1.91 16 12 C -0.12 -3.04 5.37 30.67 0.16 -2.87 16 13 C 0.14 4.96 2.93 44.97 0.13 5.09 16 14 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 15 C 0.16 7.60 4.87 86.38 0.42 8.02 16 16 N -0.72 -40.39 3.02 -343.44 -1.04 -41.43 16 17 C -0.19 -12.67 10.19 84.03 0.86 -11.81 16 18 H 0.05 3.63 8.06 -2.91 -0.02 3.61 16 19 C -0.07 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.99 -69.91 13.97 21.65 0.30 -69.61 16 21 Si 0.95 53.43 27.74 68.60 1.90 55.33 16 22 H -0.27 -14.58 7.11 99.48 0.71 -13.87 16 23 H -0.29 -16.39 7.11 99.48 0.71 -15.69 16 24 H -0.28 -15.63 6.52 99.48 0.65 -14.98 16 25 C -0.22 -7.74 9.86 22.41 0.22 -7.51 16 26 C 0.06 1.59 6.60 41.40 0.27 1.86 16 27 C -0.10 -1.62 5.94 -11.54 -0.07 -1.69 16 28 C -0.15 -2.53 10.05 30.62 0.31 -2.22 16 29 C -0.17 -3.12 10.06 30.62 0.31 -2.81 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.13 0.58 7.12 -2.38 -0.02 0.56 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 3.24 4.15 -28.20 -0.12 3.12 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.03 1.22 8.13 -2.38 -0.02 1.20 16 44 H 0.03 1.34 6.35 -2.38 -0.02 1.32 16 45 H 0.35 19.72 4.84 -92.71 -0.45 19.27 16 46 H 0.25 17.00 8.31 -92.70 -0.77 16.23 16 47 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 48 H 0.15 1.36 7.16 -2.39 -0.02 1.34 16 49 H 0.08 1.70 7.94 -2.39 -0.02 1.68 16 50 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 52 H 0.07 1.81 7.97 -2.39 -0.02 1.79 16 Total: -1.00 -91.46 403.30 3.75 -87.71 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.30 Total: 29.07 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 6.20 Total: 5.02 kcal Atomic # 7 Polarization: -145.59 SS G_CDS: -4.61 Total: -150.20 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.04 Total: -26.94 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 1.90 Total: 55.33 kcal Total: -91.46 3.75 -87.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661926318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.490 kcal (2) G-P(sol) polarization free energy of solvation -91.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds