Wall clock time and date at job start Wed Apr 1 2020 04:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46996 * 2 1 4 4 N 1.28440 * 125.18962 * 274.94953 * 3 2 1 5 5 C 1.30868 * 110.92743 * 180.15862 * 4 3 2 6 6 C 1.50701 * 126.07064 * 179.87528 * 5 4 3 7 7 C 1.52997 * 117.49812 * 195.94472 * 6 5 4 8 8 C 1.52998 * 117.49838 * 264.60476 * 6 5 4 9 9 C 1.39676 * 107.85918 * 359.61227 * 5 4 3 10 10 C 1.36599 * 125.19051 * 94.67555 * 3 2 1 11 11 C 1.47162 * 126.88426 * 359.97438 * 10 3 2 12 12 O 1.21626 * 120.00400 * 354.29084 * 11 10 3 13 13 N 1.34782 * 119.99809 * 174.29347 * 11 10 3 14 14 C 1.47022 * 125.64868 * 4.80792 * 13 11 10 15 15 C 1.54334 * 107.26351 * 178.85326 * 14 13 11 16 16 C 1.55162 * 103.02262 * 338.13934 * 15 14 13 17 17 H 1.08994 * 111.03856 * 277.22200 * 16 15 14 18 18 C 1.52997 * 111.00151 * 153.38174 * 16 15 14 19 19 C 1.53006 * 109.46966 * 181.35293 * 18 16 15 20 20 N 1.46499 * 109.47323 * 180.02562 * 19 18 16 21 21 C 1.36933 * 120.00110 * 180.02562 * 20 19 18 22 22 H 1.08000 * 119.99893 * 359.97438 * 21 20 19 23 23 C 1.38808 * 120.00046 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00121 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47197 * 59.99852 * 25 23 21 27 27 H 1.48497 * 109.46919 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47034 * 299.99640 * 25 23 21 29 29 C 1.47422 * 125.64694 * 185.12228 * 13 11 10 30 30 H 1.09005 * 109.46652 * 175.01353 * 1 2 3 31 31 H 1.08999 * 109.47419 * 295.00737 * 1 2 3 32 32 H 1.08996 * 109.47225 * 55.01163 * 1 2 3 33 33 H 1.08996 * 109.47395 * 239.99877 * 2 1 3 34 34 H 1.09004 * 109.47397 * 119.99493 * 2 1 3 35 35 H 1.09002 * 115.54780 * 50.26816 * 6 5 4 36 36 H 1.09003 * 117.49772 * 214.99781 * 7 6 5 37 37 H 1.08999 * 117.50012 * 0.02562 * 7 6 5 38 38 H 1.09000 * 117.49811 * 359.97438 * 8 6 5 39 39 H 1.09001 * 117.50167 * 144.96922 * 8 6 5 40 40 H 1.07997 * 127.31338 * 180.20461 * 9 5 4 41 41 H 1.08996 * 109.88502 * 298.39834 * 14 13 11 42 42 H 1.09003 * 109.88095 * 59.56507 * 14 13 11 43 43 H 1.09003 * 110.85016 * 219.67458 * 15 14 13 44 44 H 1.09000 * 110.66949 * 96.52327 * 15 14 13 45 45 H 1.08998 * 109.47406 * 301.35034 * 18 16 15 46 46 H 1.08994 * 109.47308 * 61.35893 * 18 16 15 47 47 H 1.09001 * 109.46849 * 300.00618 * 19 18 16 48 48 H 1.09000 * 109.47048 * 59.99629 * 19 18 16 49 49 H 0.96995 * 119.99846 * 359.97438 * 20 19 18 50 50 H 0.96994 * 119.99761 * 180.02562 * 24 23 21 51 51 H 1.09003 * 110.36538 * 322.92552 * 29 13 11 52 52 H 1.09000 * 110.37095 * 85.14065 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1797 2.1093 -1.0458 5 6 2.6318 3.2947 -0.7249 6 6 2.9437 4.4148 -1.6836 7 6 3.8009 5.5709 -1.1644 8 6 4.3932 4.5616 -2.1510 9 6 2.7683 3.3394 0.6645 10 6 2.3665 2.0931 1.1126 11 6 2.3227 1.6282 2.5082 12 8 1.8487 0.5396 2.7720 13 7 2.8077 2.4088 3.4941 14 6 3.3142 3.7794 3.3311 15 6 3.7335 4.2820 4.7288 16 6 2.9219 3.3699 5.6863 17 1 1.9064 3.7440 5.8161 18 6 3.6272 3.2267 7.0364 19 6 2.8159 2.2954 7.9395 20 7 3.4909 2.1588 9.2325 21 6 2.9465 1.3680 10.2089 22 1 2.0192 0.8455 10.0259 23 6 3.5859 1.2390 11.4342 24 7 4.7157 1.8762 11.6573 25 14 2.8427 0.1608 12.7665 26 1 2.7331 -1.2345 12.2703 27 1 3.7123 0.1909 13.9698 28 1 1.4923 0.6686 13.1182 29 6 2.9244 2.0274 4.9133 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3634 0.4344 0.9313 32 1 -0.3633 0.5892 -0.8419 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.1574 4.6533 -2.3997 36 1 3.5784 6.5701 -1.5390 37 1 4.1395 5.5212 -0.1295 38 1 5.1212 3.8482 -1.7648 39 1 4.5604 4.8962 -3.1748 40 1 3.1141 4.1700 1.2619 41 1 4.1743 3.7796 2.6616 42 1 2.5288 4.4195 2.9292 43 1 3.4560 5.3273 4.8645 44 1 4.8041 4.1457 4.8815 45 1 4.6223 2.8088 6.8839 46 1 3.7126 4.2059 7.5074 47 1 1.8208 2.7133 8.0918 48 1 2.7304 1.3162 7.4684 49 1 4.3239 2.6278 9.3966 50 1 5.1626 1.7857 12.5134 51 1 2.0733 1.4156 5.2129 52 1 3.8567 1.4898 5.0864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672810150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:51 Heat of formation + Delta-G solvation = 80.820202 kcal Electronic energy + Delta-G solvation = -30176.993325 eV Core-core repulsion = 26179.369834 eV Total energy + Delta-G solvation = -3997.623491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.90170 -40.09221 -38.01399 -37.48196 -35.28286 -34.48856 -33.16447 -31.47422 -30.81842 -30.00815 -29.55003 -27.18800 -25.16201 -24.79114 -23.64587 -22.87937 -22.61780 -21.94417 -21.32164 -20.83203 -20.10501 -19.05407 -17.55199 -17.12800 -16.85035 -16.53533 -16.04830 -15.88140 -15.16809 -14.91020 -14.87968 -14.75486 -14.57642 -14.01567 -13.86806 -13.50844 -13.35026 -13.12334 -13.01605 -12.82276 -12.71990 -12.55629 -12.27091 -12.12632 -11.87207 -11.72837 -11.63079 -11.43758 -11.25332 -11.09103 -10.98500 -10.82629 -10.69914 -10.57281 -10.47377 -10.38018 -10.20869 -10.00757 -9.66658 -9.38336 -9.12660 -8.85436 -8.83838 -6.91127 -5.75434 -3.04018 1.00753 2.01414 2.19282 2.79633 2.94947 3.45502 3.46277 3.49538 3.50765 3.94862 4.09117 4.37887 4.43074 4.52555 4.53762 4.59841 4.65006 4.66260 4.73434 4.87779 4.90233 4.96499 5.02745 5.12999 5.18417 5.27151 5.31238 5.34132 5.37325 5.50195 5.51565 5.55727 5.56769 5.63088 5.73974 5.74707 5.76154 5.77007 5.79790 5.85389 6.00467 6.06450 6.17978 6.21653 6.35309 6.35973 6.46952 6.83317 6.87268 7.19415 7.71134 7.74708 7.88596 8.43879 9.54746 10.12847 10.47250 11.47490 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016701 B = 0.001994 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.125579 B =14040.673399 C =15458.441549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.252 5.252 4 N -0.269 5.269 5 C 0.051 3.949 6 C -0.073 4.073 7 C -0.166 4.166 8 C -0.167 4.167 9 C -0.193 4.193 10 C -0.029 4.029 11 C 0.603 3.397 12 O -0.538 6.538 13 N -0.602 5.602 14 C 0.093 3.907 15 C -0.130 4.130 16 C -0.094 4.094 17 H 0.087 0.913 18 C -0.114 4.114 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.112 3.888 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.169 0.831 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.085 0.915 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 7.183 -30.176 31.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.040 5.040 4 N -0.102 5.102 5 C -0.105 4.105 6 C -0.093 4.093 7 C -0.204 4.204 8 C -0.205 4.205 9 C -0.221 4.221 10 C -0.158 4.158 11 C 0.390 3.610 12 O -0.416 6.416 13 N -0.335 5.335 14 C -0.030 4.030 15 C -0.168 4.168 16 C -0.113 4.113 17 H 0.105 0.895 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.009 4.009 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.186 0.814 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.104 0.896 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.459 5.585 -30.891 31.582 hybrid contribution 0.091 0.009 1.473 1.476 sum -3.368 5.594 -29.418 30.134 Atomic orbital electron populations 1.22079 0.93314 1.03518 1.03212 1.22236 0.96406 0.76299 1.05877 1.45800 1.44202 1.12265 1.01734 1.73061 1.19099 1.04441 1.13623 1.21006 1.04058 0.92718 0.92716 1.20017 0.95114 0.94338 0.99817 1.23017 1.02955 0.94362 1.00033 1.23005 0.95193 1.02453 0.99846 1.22557 1.07483 0.97256 0.94821 1.21301 1.10603 0.94067 0.89791 1.16478 0.78199 0.83829 0.82458 1.90800 1.46119 1.21290 1.83436 1.48121 1.61466 1.15319 1.08552 1.22464 0.98913 0.82680 0.98951 1.22777 1.01280 1.00211 0.92519 1.22350 1.00415 0.93875 0.94702 0.89514 1.21687 0.99394 1.01189 0.93003 1.20686 0.94543 0.95650 0.86814 1.42352 1.27585 1.57396 1.10485 1.19196 1.04758 1.20402 0.92690 0.91248 1.24747 0.97478 1.00846 0.98034 1.69647 1.17949 1.46610 1.24143 0.86257 0.78103 0.80316 0.81465 1.21258 1.21679 1.21266 1.22493 1.03180 0.97726 0.77521 0.90020 0.91488 0.91854 0.88514 0.86340 0.86455 0.88011 0.88333 0.88682 0.88269 0.81400 0.90729 0.90725 0.89597 0.90010 0.91526 0.91157 0.96433 0.96297 0.78320 0.93488 0.89621 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.11 1.07 6.59 -4.04 -0.03 1.05 16 3 N -0.25 -2.96 3.35 -57.14 -0.19 -3.15 16 4 N -0.27 -3.20 11.90 33.64 0.40 -2.80 16 5 C 0.05 0.53 6.85 -82.47 -0.57 -0.04 16 6 C -0.07 -0.56 6.33 -91.77 -0.58 -1.14 16 7 C -0.17 -0.92 10.03 -26.69 -0.27 -1.19 16 8 C -0.17 -1.05 10.24 -26.69 -0.27 -1.33 16 9 C -0.19 -1.92 8.72 -38.98 -0.34 -2.26 16 10 C -0.03 -0.35 6.92 -82.06 -0.57 -0.92 16 11 C 0.60 8.04 7.81 -12.64 -0.10 7.94 16 12 O -0.54 -8.52 14.90 5.25 0.08 -8.44 16 13 N -0.60 -7.02 3.33 -171.88 -0.57 -7.59 16 14 C 0.09 0.77 5.01 -3.06 -0.02 0.75 16 15 C -0.13 -1.09 6.42 -24.89 -0.16 -1.25 16 16 C -0.09 -1.07 3.08 -88.47 -0.27 -1.34 16 17 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 18 C -0.11 -1.67 4.84 -26.73 -0.13 -1.80 16 19 C 0.15 2.95 6.11 -4.04 -0.02 2.93 16 20 N -0.73 -18.65 5.60 -59.91 -0.34 -18.99 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 25 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.11 1.42 5.59 -2.53 -0.01 1.40 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.12 1.26 6.18 -51.93 -0.32 0.94 16 35 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.51 7.22 -51.93 -0.37 0.14 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.17 1.25 4.08 -52.49 -0.21 1.03 16 41 H 0.07 0.53 6.93 -51.93 -0.36 0.17 16 42 H 0.07 0.53 6.99 -51.93 -0.36 0.17 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.67 8.04 -51.93 -0.42 0.26 16 45 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.38 7.46 -51.93 -0.39 -0.01 16 49 H 0.38 10.14 7.67 -40.82 -0.31 9.82 16 50 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 52 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 LS Contribution 415.69 15.07 6.26 6.26 Total: -1.00 -34.13 415.69 -10.47 -44.60 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.62 Total: 5.85 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.20 Total: -5.68 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.03 Total: -60.20 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.13 -10.47 -44.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672810150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.419 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds