Wall clock time and date at job start Wed Apr 1 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47320 * 2 1 4 4 N 1.39935 * 125.74704 * 269.68974 * 3 2 1 5 5 C 1.30447 * 108.89520 * 179.84296 * 4 3 2 6 6 C 1.41295 * 108.02293 * 0.40853 * 5 4 3 7 7 C 1.47420 * 126.41653 * 179.71682 * 6 5 4 8 8 O 1.21610 * 120.00140 * 174.06414 * 7 6 5 9 9 N 1.34785 * 120.00175 * 354.06667 * 7 6 5 10 10 C 1.46498 * 120.00035 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.67205 * 34.29353 * 10 9 7 12 12 C 1.54890 * 110.75343 * 271.06284 * 10 9 7 13 13 C 1.54470 * 104.09862 * 203.89496 * 12 10 9 14 14 C 1.53879 * 106.68588 * 23.34174 * 13 12 10 15 15 H 1.09007 * 110.03169 * 240.87457 * 14 13 12 16 16 C 1.52997 * 110.03203 * 119.44080 * 14 13 12 17 17 N 1.46506 * 109.46835 * 67.83824 * 16 14 13 18 18 C 1.36942 * 120.00012 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99442 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00017 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46746 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47095 * 119.99952 * 22 20 18 25 25 H 1.48501 * 109.47047 * 240.00463 * 22 20 18 26 26 C 1.54272 * 106.59536 * 0.15870 * 14 13 12 27 27 C 1.34253 * 125.75791 * 89.99286 * 3 2 1 28 28 C 1.50701 * 126.29368 * 359.96445 * 27 3 2 29 29 C 1.52991 * 117.50209 * 128.62569 * 28 27 3 30 30 C 1.53001 * 117.49932 * 59.96453 * 28 27 3 31 31 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47267 * 300.00290 * 1 2 3 33 33 H 1.09001 * 109.47122 * 60.00786 * 1 2 3 34 34 H 1.08997 * 109.47799 * 239.99259 * 2 1 3 35 35 H 1.09001 * 109.47122 * 119.99213 * 2 1 3 36 36 H 1.07997 * 125.99110 * 180.12386 * 5 4 3 37 37 H 0.96992 * 119.99489 * 359.97438 * 9 7 6 38 38 H 1.08995 * 110.48721 * 322.41858 * 12 10 9 39 39 H 1.09000 * 110.48943 * 85.07179 * 12 10 9 40 40 H 1.09000 * 109.86056 * 264.10396 * 13 12 10 41 41 H 1.08998 * 110.16331 * 142.75154 * 13 12 10 42 42 H 1.08999 * 109.46999 * 187.83332 * 16 14 13 43 43 H 1.08992 * 109.47199 * 307.83551 * 16 14 13 44 44 H 0.96998 * 120.00216 * 359.97438 * 17 16 14 45 45 H 0.96995 * 119.99974 * 179.97438 * 21 20 18 46 46 H 1.09006 * 110.47944 * 217.71023 * 26 14 13 47 47 H 1.08997 * 110.59845 * 95.12526 * 26 14 13 48 48 H 1.09001 * 115.54743 * 274.30016 * 28 27 3 49 49 H 1.09009 * 117.49920 * 0.02562 * 29 28 27 50 50 H 1.09000 * 117.49975 * 145.02029 * 29 28 27 51 51 H 1.08995 * 117.50005 * 214.98303 * 30 28 27 52 52 H 1.08997 * 117.49872 * 0.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2966 2.1499 -1.1357 5 6 2.7077 3.3288 -0.7576 6 6 2.7170 3.3562 0.6551 7 6 3.1188 4.4911 1.5058 8 8 2.9798 4.4259 2.7122 9 7 3.6403 5.6011 0.9466 10 6 4.0391 6.7291 1.7919 11 1 4.4272 6.3757 2.7473 12 6 2.8519 7.7003 2.0072 13 6 3.5255 9.0503 2.3388 14 6 4.9439 8.9941 1.7447 15 1 5.6850 9.0986 2.5372 16 6 5.1226 10.1059 0.7090 17 7 5.1064 11.4072 1.3818 18 6 5.2499 12.5571 0.6522 19 1 5.3755 12.5046 -0.4193 20 6 5.2340 13.7901 1.2895 21 7 5.0804 13.8541 2.5952 22 14 5.4305 15.3586 0.2943 23 1 5.5868 15.0168 -1.1425 24 1 4.2283 16.2120 0.4727 25 1 6.6333 16.0938 0.7613 26 6 5.0840 7.6145 1.0686 27 6 2.2797 2.1209 1.0895 28 6 2.1240 1.6834 2.5231 29 6 3.3193 1.8840 3.4568 30 6 2.9429 0.4769 2.9864 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5137 0.8901 36 1 2.9954 4.1400 -1.4099 37 1 3.7515 5.6529 -0.0156 38 1 2.2586 7.7852 1.0968 39 1 2.2313 7.3658 2.8385 40 1 3.5784 9.1821 3.4195 41 1 2.9648 9.8702 1.8900 42 1 6.0750 9.9743 0.1955 43 1 4.3098 10.0614 -0.0158 44 1 4.9932 11.4544 2.3440 45 1 5.0697 14.7156 3.0406 46 1 6.0884 7.2176 1.2166 47 1 4.8549 7.6835 0.0053 48 1 1.1276 1.8082 2.9471 49 1 4.2183 2.3330 3.0342 50 1 3.1093 2.1405 4.4952 51 1 2.4854 -0.1918 3.7155 52 1 3.5945 -0.0002 2.2544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717885999.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:59 Heat of formation + Delta-G solvation = 61.850945 kcal Electronic energy + Delta-G solvation = -30045.264517 eV Core-core repulsion = 26046.818457 eV Total energy + Delta-G solvation = -3998.446060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89108 -39.54197 -37.85216 -37.32251 -34.91199 -34.70797 -33.28200 -31.09806 -30.62779 -30.00976 -28.67497 -27.56119 -24.97967 -24.16530 -23.60727 -22.85675 -22.31956 -22.15386 -20.83398 -20.37184 -19.56136 -19.03943 -17.84727 -17.01567 -16.57218 -16.18457 -15.98855 -15.45897 -15.15106 -15.04824 -14.79575 -14.55465 -14.42363 -14.02772 -13.85720 -13.34038 -13.28556 -13.09413 -12.91530 -12.72422 -12.60963 -12.36331 -12.01365 -11.92654 -11.79637 -11.76181 -11.53306 -11.32498 -11.04116 -10.91105 -10.84747 -10.70437 -10.54811 -10.44051 -10.30081 -10.04565 -9.81706 -9.80792 -9.73382 -9.62105 -9.06243 -8.82986 -8.75141 -6.86031 -5.72086 -3.00154 1.22325 1.90695 1.92861 3.24232 3.37666 3.39058 3.45976 3.51410 3.53759 3.94991 4.02624 4.41359 4.44473 4.53156 4.58402 4.62773 4.64842 4.76785 4.81006 4.90951 4.97581 5.01490 5.09441 5.13656 5.19985 5.26959 5.48180 5.51931 5.57645 5.59228 5.63554 5.70399 5.73607 5.75093 5.78262 5.86744 5.93082 6.01590 6.09594 6.21641 6.27123 6.36972 6.41601 6.47835 6.55006 6.68623 6.75252 6.89750 7.01369 7.22715 7.59432 7.74468 8.32640 8.47246 9.58282 10.17894 10.52512 11.50942 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.001777 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.950217 B =15752.517228 C =16366.522669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.355 5.355 4 N -0.296 5.296 5 C 0.081 3.919 6 C -0.289 4.289 7 C 0.592 3.408 8 O -0.539 6.539 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.094 0.906 12 C -0.131 4.131 13 C -0.115 4.115 14 C -0.095 4.095 15 H 0.074 0.926 16 C 0.160 3.840 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.120 4.120 27 C 0.186 3.814 28 C -0.104 4.104 29 C -0.114 4.114 30 C -0.187 4.187 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.190 0.810 37 H 0.396 0.604 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.019 0.981 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.126 0.874 49 H 0.097 0.903 50 H 0.104 0.896 51 H 0.102 0.898 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -33.411 -2.793 34.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.134 5.134 4 N -0.115 5.115 5 C -0.107 4.107 6 C -0.304 4.304 7 C 0.380 3.620 8 O -0.417 6.417 9 N -0.370 5.370 10 C 0.039 3.961 11 H 0.112 0.888 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.114 4.114 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.376 5.376 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.159 4.159 27 C 0.053 3.947 28 C -0.124 4.124 29 C -0.151 4.151 30 C -0.225 4.225 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.207 0.793 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.144 0.856 49 H 0.116 0.884 50 H 0.122 0.878 51 H 0.121 0.879 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.615 -34.253 -3.111 35.227 hybrid contribution 0.190 1.621 -0.219 1.647 sum -7.425 -32.632 -3.329 33.632 Atomic orbital electron populations 1.22172 0.93832 1.03336 1.03454 1.21835 0.95672 0.77480 1.04821 1.48560 1.49409 1.12296 1.03117 1.77196 1.22423 1.04506 1.07391 1.24040 0.97228 0.95568 0.93869 1.20036 1.20482 0.96445 0.93405 1.17170 0.76715 0.81184 0.86977 1.90768 1.55177 1.81587 1.14151 1.45812 1.64725 1.15887 1.10539 1.22018 0.94851 0.84732 0.94531 0.88761 1.22761 0.97432 0.95195 1.01578 1.22161 0.95626 0.96686 1.00834 1.21861 0.97397 0.93608 0.98561 0.90782 1.20739 0.97432 0.85296 0.93239 1.42385 1.87992 0.99991 1.07280 1.19286 1.41339 0.84769 0.91448 0.91217 1.24737 1.03135 0.97580 0.95705 1.69672 1.57419 1.23938 1.07190 0.86130 0.77233 0.83881 0.79037 1.20609 1.21926 1.21927 1.22601 0.98318 0.95020 0.99966 1.20544 0.94489 0.90508 0.89123 1.20429 0.99196 1.04216 0.88553 1.22774 0.97444 0.95619 0.99309 1.23217 1.03325 0.92010 1.03916 0.90207 0.91802 0.91481 0.88430 0.88386 0.79345 0.76962 0.91703 0.91664 0.92021 0.90431 0.96598 0.96351 0.78217 0.93625 0.91314 0.90992 0.85598 0.88441 0.87766 0.87916 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 37.15 0.38 -0.40 16 2 C 0.12 0.66 6.93 -4.04 -0.03 0.63 16 3 N -0.35 -3.16 3.58 -56.61 -0.20 -3.37 16 4 N -0.30 -3.09 12.50 30.86 0.39 -2.71 16 5 C 0.08 0.77 11.50 -16.98 -0.20 0.57 16 6 C -0.29 -3.13 6.10 -105.07 -0.64 -3.78 16 7 C 0.59 7.24 7.69 -12.52 -0.10 7.14 16 8 O -0.54 -7.90 13.35 5.27 0.07 -7.83 16 9 N -0.72 -7.71 5.18 -52.95 -0.27 -7.98 16 10 C 0.14 1.76 3.21 -65.94 -0.21 1.55 16 11 H 0.09 1.28 7.62 -51.93 -0.40 0.89 16 12 C -0.13 -1.78 6.53 -24.96 -0.16 -1.94 16 13 C -0.11 -1.82 6.19 -25.50 -0.16 -1.98 16 14 C -0.09 -1.52 2.96 -89.50 -0.27 -1.78 16 15 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 16 C 0.16 3.21 5.27 -4.04 -0.02 3.19 16 17 N -0.73 -18.69 5.39 -59.91 -0.32 -19.01 16 18 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 C -0.12 -1.50 5.98 -25.07 -0.15 -1.65 16 27 C 0.19 1.83 6.43 -81.60 -0.52 1.31 16 28 C -0.10 -0.86 5.17 -91.78 -0.47 -1.34 16 29 C -0.11 -0.99 8.07 -26.70 -0.22 -1.20 16 30 C -0.19 -1.13 8.95 -26.69 -0.24 -1.37 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.36 6.32 -51.93 -0.33 0.04 16 36 H 0.19 1.19 7.53 -52.49 -0.40 0.80 16 37 H 0.40 3.29 7.53 -40.82 -0.31 2.99 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.41 7.61 -51.93 -0.40 1.02 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.31 7.55 -40.82 -0.31 10.00 16 45 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 48 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.10 1.01 7.69 -51.92 -0.40 0.61 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.09 0.54 7.89 -51.93 -0.41 0.13 16 LS Contribution 418.25 15.07 6.30 6.30 Total: -1.00 -34.32 418.25 -10.39 -44.71 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.80 Total: 8.56 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.25 Total: -8.47 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.31 Total: -60.90 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.07 Total: -7.83 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.32 -10.39 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717885999.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.561 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds