Wall clock time and date at job start Wed Apr 1 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47320 * 2 1 4 4 N 1.39935 * 125.74704 * 269.68974 * 3 2 1 5 5 C 1.30447 * 108.89520 * 179.84296 * 4 3 2 6 6 C 1.41295 * 108.02293 * 0.40853 * 5 4 3 7 7 C 1.47420 * 126.41653 * 179.71682 * 6 5 4 8 8 O 1.21610 * 120.00140 * 174.06414 * 7 6 5 9 9 N 1.34785 * 120.00175 * 354.06667 * 7 6 5 10 10 C 1.46498 * 120.00035 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.67205 * 34.29353 * 10 9 7 12 12 C 1.54890 * 110.75343 * 271.06284 * 10 9 7 13 13 C 1.54470 * 104.09862 * 203.89496 * 12 10 9 14 14 C 1.53879 * 106.68588 * 23.34174 * 13 12 10 15 15 H 1.09007 * 110.03169 * 240.87457 * 14 13 12 16 16 C 1.52997 * 110.03203 * 119.44080 * 14 13 12 17 17 N 1.46506 * 109.46835 * 67.83824 * 16 14 13 18 18 C 1.36942 * 120.00012 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99442 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00017 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46746 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47095 * 119.99952 * 22 20 18 25 25 H 1.48501 * 109.47047 * 240.00463 * 22 20 18 26 26 C 1.54272 * 106.59536 * 0.15870 * 14 13 12 27 27 C 1.34253 * 125.75791 * 89.99286 * 3 2 1 28 28 C 1.50701 * 126.29368 * 359.96445 * 27 3 2 29 29 C 1.52991 * 117.50209 * 128.62569 * 28 27 3 30 30 C 1.53001 * 117.49932 * 59.96453 * 28 27 3 31 31 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47267 * 300.00290 * 1 2 3 33 33 H 1.09001 * 109.47122 * 60.00786 * 1 2 3 34 34 H 1.08997 * 109.47799 * 239.99259 * 2 1 3 35 35 H 1.09001 * 109.47122 * 119.99213 * 2 1 3 36 36 H 1.07997 * 125.99110 * 180.12386 * 5 4 3 37 37 H 0.96992 * 119.99489 * 359.97438 * 9 7 6 38 38 H 1.08995 * 110.48721 * 322.41858 * 12 10 9 39 39 H 1.09000 * 110.48943 * 85.07179 * 12 10 9 40 40 H 1.09000 * 109.86056 * 264.10396 * 13 12 10 41 41 H 1.08998 * 110.16331 * 142.75154 * 13 12 10 42 42 H 1.08999 * 109.46999 * 187.83332 * 16 14 13 43 43 H 1.08992 * 109.47199 * 307.83551 * 16 14 13 44 44 H 0.96998 * 120.00216 * 359.97438 * 17 16 14 45 45 H 0.96995 * 119.99974 * 179.97438 * 21 20 18 46 46 H 1.09006 * 110.47944 * 217.71023 * 26 14 13 47 47 H 1.08997 * 110.59845 * 95.12526 * 26 14 13 48 48 H 1.09001 * 115.54743 * 274.30016 * 28 27 3 49 49 H 1.09009 * 117.49920 * 0.02562 * 29 28 27 50 50 H 1.09000 * 117.49975 * 145.02029 * 29 28 27 51 51 H 1.08995 * 117.50005 * 214.98303 * 30 28 27 52 52 H 1.08997 * 117.49872 * 0.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2966 2.1499 -1.1357 5 6 2.7077 3.3288 -0.7576 6 6 2.7170 3.3562 0.6551 7 6 3.1188 4.4911 1.5058 8 8 2.9798 4.4259 2.7122 9 7 3.6403 5.6011 0.9466 10 6 4.0391 6.7291 1.7919 11 1 4.4272 6.3757 2.7473 12 6 2.8519 7.7003 2.0072 13 6 3.5255 9.0503 2.3388 14 6 4.9439 8.9941 1.7447 15 1 5.6850 9.0986 2.5372 16 6 5.1226 10.1059 0.7090 17 7 5.1064 11.4072 1.3818 18 6 5.2499 12.5571 0.6522 19 1 5.3755 12.5046 -0.4193 20 6 5.2340 13.7901 1.2895 21 7 5.0804 13.8541 2.5952 22 14 5.4305 15.3586 0.2943 23 1 5.5868 15.0168 -1.1425 24 1 4.2283 16.2120 0.4727 25 1 6.6333 16.0938 0.7613 26 6 5.0840 7.6145 1.0686 27 6 2.2797 2.1209 1.0895 28 6 2.1240 1.6834 2.5231 29 6 3.3193 1.8840 3.4568 30 6 2.9429 0.4769 2.9864 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5137 0.8901 36 1 2.9954 4.1400 -1.4099 37 1 3.7515 5.6529 -0.0156 38 1 2.2586 7.7852 1.0968 39 1 2.2313 7.3658 2.8385 40 1 3.5784 9.1821 3.4195 41 1 2.9648 9.8702 1.8900 42 1 6.0750 9.9743 0.1955 43 1 4.3098 10.0614 -0.0158 44 1 4.9932 11.4544 2.3440 45 1 5.0697 14.7156 3.0406 46 1 6.0884 7.2176 1.2166 47 1 4.8549 7.6835 0.0053 48 1 1.1276 1.8082 2.9471 49 1 4.2183 2.3330 3.0342 50 1 3.1093 2.1405 4.4952 51 1 2.4854 -0.1918 3.7155 52 1 3.5945 -0.0002 2.2544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717885999.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:58 Heat of formation + Delta-G solvation = 40.580182 kcal Electronic energy + Delta-G solvation = -30046.186886 eV Core-core repulsion = 26046.818457 eV Total energy + Delta-G solvation = -3999.368429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.58965 -40.56073 -39.01136 -37.96253 -36.36341 -35.45208 -34.64976 -32.89866 -31.31803 -30.77999 -30.04690 -28.79494 -26.30322 -25.27832 -24.23455 -23.93047 -23.44007 -23.07269 -21.74752 -21.29976 -20.42984 -20.22942 -19.08241 -18.58458 -17.36972 -17.10617 -16.84388 -16.61322 -16.43833 -15.85630 -15.62802 -15.53637 -15.31247 -15.21312 -15.09962 -14.71784 -14.49564 -14.32532 -14.13524 -13.49307 -13.32395 -13.25007 -13.04118 -12.98414 -12.84947 -12.82255 -12.53027 -12.40057 -12.33395 -12.12960 -12.09129 -12.06042 -11.81267 -11.67788 -11.50502 -11.47300 -11.24785 -11.17204 -10.90623 -10.71943 -10.41840 -9.99598 -9.56200 -8.96037 -7.93140 -5.21382 0.48716 1.17075 1.32813 1.47970 1.48906 1.59003 2.34263 2.51117 2.58000 2.77897 3.35724 3.40476 3.46065 3.64367 3.72780 3.87754 3.91004 3.95123 4.02622 4.03806 4.13255 4.23929 4.26063 4.31647 4.42489 4.44391 4.52216 4.55875 4.64665 4.71852 4.72419 4.76820 4.79591 4.83418 4.87392 4.96807 5.00425 5.04858 5.12058 5.16652 5.20068 5.23108 5.24055 5.31316 5.41460 5.44218 5.52510 5.57086 5.70173 5.86926 6.29684 6.51948 6.75219 7.35607 7.42921 8.13781 8.36230 9.30802 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.001777 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.950217 B =15752.517228 C =16366.522669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.351 5.351 4 N -0.320 5.320 5 C 0.083 3.917 6 C -0.313 4.313 7 C 0.591 3.409 8 O -0.569 6.569 9 N -0.709 5.709 10 C 0.154 3.846 11 H 0.083 0.917 12 C -0.121 4.121 13 C -0.111 4.111 14 C -0.088 4.088 15 H 0.065 0.935 16 C 0.160 3.840 17 N -0.746 5.746 18 C -0.243 4.243 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.294 1.294 25 H -0.294 1.294 26 C -0.107 4.107 27 C 0.184 3.816 28 C -0.114 4.114 29 C -0.131 4.131 30 C -0.155 4.155 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.215 0.785 37 H 0.410 0.590 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.130 0.870 49 H 0.075 0.925 50 H 0.101 0.899 51 H 0.128 0.872 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 -35.643 -4.346 36.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.130 5.130 4 N -0.139 5.139 5 C -0.104 4.104 6 C -0.328 4.328 7 C 0.380 3.620 8 O -0.449 6.449 9 N -0.360 5.360 10 C 0.049 3.951 11 H 0.101 0.899 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.108 4.108 15 H 0.083 0.917 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.145 4.145 27 C 0.050 3.950 28 C -0.133 4.133 29 C -0.169 4.169 30 C -0.192 4.192 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.232 0.768 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.107 0.893 48 H 0.147 0.853 49 H 0.094 0.906 50 H 0.119 0.881 51 H 0.146 0.854 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.683 -36.536 -4.737 37.634 hybrid contribution 0.182 2.225 0.261 2.248 sum -7.500 -34.310 -4.476 35.405 Atomic orbital electron populations 1.22140 0.93210 1.04638 1.02227 1.22193 0.96177 0.75977 1.06256 1.48855 1.48615 1.13128 1.02423 1.77152 1.23228 1.05081 1.08406 1.24446 0.96368 0.95981 0.93603 1.20055 1.22197 0.96562 0.93988 1.17400 0.76242 0.81631 0.86756 1.90753 1.56483 1.82168 1.15478 1.45635 1.64258 1.14995 1.11114 1.21741 0.94036 0.84877 0.94440 0.89923 1.22660 0.97730 0.94065 1.01556 1.22060 0.95612 0.97117 1.00164 1.21754 0.97042 0.94403 0.97564 0.91679 1.20913 0.97493 0.84191 0.94060 1.42617 1.87872 1.01428 1.06902 1.19706 1.39868 0.85902 0.91977 0.90579 1.25580 1.03874 1.00866 0.96771 1.69831 1.59178 1.24318 1.08840 0.85067 0.76641 0.79681 0.78340 1.18940 1.22147 1.22079 1.22495 0.99203 0.92375 1.00437 1.20805 0.93745 0.90500 0.89986 1.20489 0.99209 1.05978 0.87667 1.22669 0.96914 0.98205 0.99138 1.23292 1.01596 0.90860 1.03450 0.87644 0.92491 0.93153 0.87513 0.86426 0.76837 0.75302 0.91057 0.92324 0.92725 0.93048 0.96090 0.95995 0.79485 0.94095 0.89783 0.89296 0.85281 0.90641 0.88069 0.85429 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.24 71.98 0.74 -0.47 16 2 C 0.11 0.97 6.93 86.38 0.60 1.57 16 3 N -0.35 -5.77 3.58 -333.01 -1.19 -6.97 16 4 N -0.32 -6.25 12.50 -56.27 -0.70 -6.96 16 5 C 0.08 1.46 11.50 85.65 0.99 2.45 16 6 C -0.31 -6.55 6.10 -20.15 -0.12 -6.67 16 7 C 0.59 14.15 7.69 86.66 0.67 14.81 16 8 O -0.57 -16.83 13.35 -4.06 -0.05 -16.88 16 9 N -0.71 -14.22 5.18 -439.69 -2.28 -16.50 16 10 C 0.15 3.63 3.21 46.28 0.15 3.78 16 11 H 0.08 2.21 7.62 -2.39 -0.02 2.19 16 12 C -0.12 -3.25 6.53 31.74 0.21 -3.04 16 13 C -0.11 -3.58 6.19 31.39 0.19 -3.39 16 14 C -0.09 -2.79 2.96 -10.07 -0.03 -2.82 16 15 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 16 C 0.16 6.30 5.27 86.38 0.46 6.76 16 17 N -0.75 -38.46 5.39 -343.45 -1.85 -40.31 16 18 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 21 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 22 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 C -0.11 -2.45 5.98 31.67 0.19 -2.26 16 27 C 0.18 3.44 6.43 42.14 0.27 3.71 16 28 C -0.11 -1.77 5.17 -11.54 -0.06 -1.83 16 29 C -0.13 -2.24 8.07 30.61 0.25 -1.99 16 30 C -0.16 -1.54 8.95 30.62 0.27 -1.26 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.53 6.32 -2.39 -0.02 0.52 16 36 H 0.22 2.25 7.53 -2.91 -0.02 2.23 16 37 H 0.41 5.90 7.53 -92.71 -0.70 5.20 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.92 7.61 -2.39 -0.02 1.90 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.37 20.59 7.55 -92.71 -0.70 19.89 16 45 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 46 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.09 1.78 7.73 -2.39 -0.02 1.76 16 48 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.07 1.62 7.69 -2.38 -0.02 1.60 16 50 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.10 0.89 7.89 -2.39 -0.02 0.87 16 Total: -1.00 -75.04 418.25 1.83 -73.21 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.47 Total: 33.52 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 6.07 Total: -7.69 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -5.74 Total: -130.96 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.05 Total: -16.88 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.04 1.83 -73.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717885999.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.788 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds