Wall clock time and date at job start Wed Apr 1 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47597 * 2 1 4 4 N 1.39929 * 125.75391 * 269.97835 * 3 2 1 5 5 C 1.30453 * 108.89799 * 179.76669 * 4 3 2 6 6 C 1.41284 * 108.01887 * 0.38543 * 5 4 3 7 7 C 1.47432 * 126.41094 * 179.87902 * 6 5 4 8 8 O 1.21598 * 120.00072 * 174.27694 * 7 6 5 9 9 N 1.34778 * 120.00079 * 354.28188 * 7 6 5 10 10 C 1.46502 * 119.99939 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.05781 * 33.57597 * 10 9 7 12 12 C 1.53885 * 110.02829 * 272.16275 * 10 9 7 13 13 C 1.54265 * 106.59659 * 240.71502 * 12 10 9 14 14 C 1.55028 * 104.28116 * 23.51825 * 13 12 10 15 15 C 1.54263 * 110.03110 * 154.99949 * 10 9 7 16 16 H 1.09000 * 110.48044 * 214.47922 * 15 10 9 17 17 C 1.52990 * 110.48782 * 336.98752 * 15 10 9 18 18 N 1.46504 * 109.47490 * 183.16190 * 17 15 10 19 19 C 1.36931 * 120.00313 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00280 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99837 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00195 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99620 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46985 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47502 * 300.00321 * 23 21 19 26 26 H 1.48498 * 109.47262 * 60.00481 * 23 21 19 27 27 C 1.34263 * 125.75577 * 89.99339 * 3 2 1 28 28 C 1.50696 * 126.28682 * 0.02562 * 27 3 2 29 29 C 1.53003 * 117.49538 * 129.91976 * 28 27 3 30 30 C 1.52997 * 59.99969 * 252.50905 * 29 28 27 31 31 H 1.09000 * 109.47246 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47222 * 300.00209 * 1 2 3 33 33 H 1.09007 * 109.46796 * 60.00174 * 1 2 3 34 34 H 1.09002 * 109.46953 * 239.99441 * 2 1 3 35 35 H 1.09007 * 109.46796 * 119.99826 * 2 1 3 36 36 H 1.08001 * 125.98862 * 180.25478 * 5 4 3 37 37 H 0.96999 * 119.99750 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.03087 * 0.02562 * 12 10 9 39 39 H 1.09001 * 110.02836 * 121.37978 * 12 10 9 40 40 H 1.09003 * 110.48659 * 142.28916 * 13 12 10 41 41 H 1.08994 * 110.48956 * 264.93413 * 13 12 10 42 42 H 1.08999 * 110.88093 * 203.89917 * 14 13 12 43 43 H 1.09002 * 110.70123 * 80.48249 * 14 13 12 44 44 H 1.09000 * 109.46884 * 63.16381 * 17 15 10 45 45 H 1.08997 * 109.47625 * 303.16841 * 17 15 10 46 46 H 0.96999 * 119.99276 * 0.02562 * 18 17 15 47 47 H 0.96994 * 120.00079 * 359.97438 * 22 21 19 48 48 H 1.08996 * 115.55521 * 275.62350 * 28 27 3 49 49 H 1.09003 * 117.49836 * 359.97438 * 29 28 27 50 50 H 1.09004 * 117.49814 * 145.01705 * 29 28 27 51 51 H 1.09004 * 117.49575 * 252.50970 * 30 29 28 52 52 H 1.09000 * 117.49828 * 107.49212 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2914 2.1518 -1.1356 5 6 2.7028 3.3306 -0.7573 6 6 2.7171 3.3560 0.6552 7 6 3.1179 4.4913 1.5061 8 8 2.9872 4.4225 2.7130 9 7 3.6291 5.6056 0.9461 10 6 4.0279 6.7336 1.7916 11 1 4.4112 6.3692 2.7447 12 6 2.8263 7.6654 2.0284 13 6 3.2146 9.0412 1.4486 14 6 4.3084 8.7186 0.3984 15 6 5.1043 7.5757 1.0761 16 1 5.8137 7.9807 1.7978 17 6 5.8322 6.7341 0.0261 18 7 6.8979 7.5315 -0.5860 19 6 7.6890 6.9842 -1.5604 20 1 7.5271 5.9648 -1.8782 21 6 8.6984 7.7401 -2.1407 22 7 8.8954 8.9825 -1.7539 23 14 9.7772 6.9936 -3.4706 24 1 10.7723 7.9989 -3.9229 25 1 10.4852 5.8073 -2.9258 26 1 8.9321 6.5811 -4.6199 27 6 2.2799 2.1208 1.0896 28 6 2.1253 1.6827 2.5231 29 6 3.3103 1.9118 3.4635 30 6 2.9688 0.4962 2.9941 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.9851 4.1437 -1.4096 37 1 3.7337 5.6604 -0.0167 38 1 1.9465 7.2780 1.5146 39 1 2.6261 7.7524 3.0963 40 1 2.3542 9.5111 0.9722 41 1 3.6176 9.6847 2.2305 42 1 4.9477 9.5843 0.2248 43 1 3.8587 8.3762 -0.5336 44 1 5.1254 6.4213 -0.7425 45 1 6.2645 5.8539 0.5019 46 1 7.0430 8.4472 -0.3008 47 1 8.3350 9.3702 -1.0636 48 1 1.1238 1.7855 2.9408 49 1 4.2018 2.3790 3.0450 50 1 3.0885 2.1656 4.5001 51 1 2.5223 -0.1813 3.7219 52 1 3.6355 0.0325 2.2670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732628019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:20 Heat of formation + Delta-G solvation = 48.431361 kcal Electronic energy + Delta-G solvation = -31228.690810 eV Core-core repulsion = 27229.662834 eV Total energy + Delta-G solvation = -3999.027976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.63876 -40.88305 -38.96231 -37.95745 -36.57059 -35.48099 -34.40952 -33.31642 -31.36158 -30.82932 -29.99220 -28.60287 -26.12961 -25.39378 -24.31356 -24.26744 -23.46828 -23.12949 -21.58309 -21.38838 -20.54025 -20.25306 -19.40971 -18.68573 -17.41207 -17.18920 -16.84005 -16.53698 -16.03141 -15.84068 -15.77539 -15.62005 -15.50734 -15.42888 -15.21795 -14.93170 -14.79016 -14.51503 -14.38095 -13.66343 -13.45885 -13.07172 -13.00498 -12.81538 -12.76413 -12.60702 -12.51482 -12.35395 -12.23154 -12.11149 -12.01589 -11.88963 -11.83187 -11.70317 -11.52813 -11.49824 -11.20325 -11.19234 -10.90519 -10.72929 -10.44645 -10.04128 -9.60420 -9.09958 -8.39085 -5.32546 0.45882 1.10271 1.30270 1.58101 1.67787 1.84261 2.32364 2.48173 2.70918 2.76635 3.33005 3.35703 3.41039 3.47218 3.65775 3.82435 3.85597 3.93230 3.99309 4.02254 4.04451 4.11006 4.22223 4.29281 4.35655 4.41322 4.43875 4.51355 4.54209 4.61895 4.71510 4.73102 4.75941 4.76837 4.82322 4.85033 4.98646 4.98867 5.08370 5.11554 5.15595 5.19814 5.22417 5.22798 5.31914 5.34884 5.44192 5.58474 5.65705 5.85513 6.46401 6.51055 6.65776 7.10539 7.35727 8.01154 8.12075 9.13214 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.002991 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.547280 B = 9358.263216 C =10929.016585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.349 5.349 4 N -0.318 5.318 5 C 0.077 3.923 6 C -0.314 4.314 7 C 0.592 3.408 8 O -0.564 6.564 9 N -0.714 5.714 10 C 0.160 3.840 11 H 0.078 0.922 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.110 4.110 15 C -0.101 4.101 16 H 0.078 0.922 17 C 0.175 3.825 18 N -0.752 5.752 19 C -0.334 4.334 20 H 0.064 0.936 21 C -0.102 4.102 22 N -0.974 5.974 23 Si 1.126 2.874 24 H -0.292 1.292 25 H -0.281 1.281 26 H -0.276 1.276 27 C 0.185 3.815 28 C -0.109 4.109 29 C -0.131 4.131 30 C -0.156 4.156 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.200 0.800 37 H 0.403 0.597 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.006 0.994 46 H 0.362 0.638 47 H 0.245 0.755 48 H 0.138 0.862 49 H 0.067 0.933 50 H 0.106 0.894 51 H 0.132 0.868 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.801 -17.580 9.400 28.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.128 5.128 4 N -0.137 5.137 5 C -0.110 4.110 6 C -0.329 4.329 7 C 0.381 3.619 8 O -0.444 6.444 9 N -0.367 5.367 10 C 0.055 3.945 11 H 0.096 0.904 12 C -0.160 4.160 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.120 4.120 16 H 0.096 0.904 17 C 0.048 3.952 18 N -0.397 5.397 19 C -0.465 4.465 20 H 0.082 0.918 21 C -0.294 4.294 22 N -0.622 5.622 23 Si 0.950 3.050 24 H -0.218 1.218 25 H -0.207 1.207 26 H -0.202 1.202 27 C 0.051 3.949 28 C -0.128 4.128 29 C -0.169 4.169 30 C -0.193 4.193 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.217 0.783 37 H 0.240 0.760 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.024 0.976 46 H 0.194 0.806 47 H 0.055 0.945 48 H 0.155 0.845 49 H 0.086 0.914 50 H 0.125 0.875 51 H 0.151 0.849 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.007 -18.517 8.105 28.440 hybrid contribution -0.632 1.025 1.033 1.587 sum -20.638 -17.491 9.138 28.555 Atomic orbital electron populations 1.22134 0.92812 1.04730 1.02340 1.22229 0.96478 0.75784 1.06237 1.48879 1.48523 1.13090 1.02317 1.77146 1.23312 1.04745 1.08544 1.24285 0.96698 0.95983 0.93987 1.20083 1.22125 0.97012 0.93674 1.17341 0.76262 0.81477 0.86834 1.90711 1.56690 1.82160 1.14824 1.45995 1.64317 1.15298 1.11051 1.21430 0.93940 0.85620 0.93549 0.90371 1.22494 0.97053 0.94727 1.01724 1.22344 0.98236 0.96575 0.97924 1.22469 0.96910 0.97132 0.98306 1.22363 0.96290 0.96199 0.97163 0.90391 1.20579 0.88841 0.92803 0.92965 1.42529 1.38067 1.13394 1.45663 1.20361 1.12799 0.98465 1.14911 0.91820 1.27144 1.00658 0.96109 1.05448 1.70982 1.42920 1.14955 1.33384 0.82658 0.74653 0.74145 0.73509 1.21808 1.20700 1.20238 1.20854 0.93647 0.90156 0.90252 1.20503 0.99221 1.06012 0.87110 1.22650 0.97062 0.97955 0.99230 1.23290 1.01422 0.91157 1.03427 0.87497 0.92144 0.93226 0.87779 0.86263 0.78305 0.75971 0.91349 0.90560 0.90252 0.90730 0.92592 0.91886 0.95613 0.97647 0.80601 0.94478 0.84491 0.91397 0.87526 0.84947 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.24 71.98 0.74 -0.84 16 2 C 0.11 1.37 6.93 86.38 0.60 1.97 16 3 N -0.35 -7.39 3.58 -333.01 -1.19 -8.58 16 4 N -0.32 -8.31 12.50 -56.27 -0.70 -9.01 16 5 C 0.08 2.00 11.50 85.65 0.99 2.98 16 6 C -0.31 -8.51 6.10 -20.15 -0.12 -8.63 16 7 C 0.59 17.44 7.65 86.66 0.66 18.11 16 8 O -0.56 -18.32 13.16 -4.03 -0.05 -18.38 16 9 N -0.71 -19.88 4.33 -442.35 -1.92 -21.80 16 10 C 0.16 4.48 3.12 45.72 0.14 4.62 16 11 H 0.08 2.38 7.57 -2.39 -0.02 2.36 16 12 C -0.12 -2.86 6.60 31.32 0.21 -2.65 16 13 C -0.11 -2.55 6.83 31.72 0.22 -2.34 16 14 C -0.11 -3.22 6.11 31.93 0.20 -3.02 16 15 C -0.10 -3.22 2.86 -9.72 -0.03 -3.25 16 16 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 17 C 0.17 7.00 4.80 86.38 0.41 7.42 16 18 N -0.75 -38.20 5.46 -343.47 -1.88 -40.07 16 19 C -0.33 -19.05 9.99 84.03 0.84 -18.21 16 20 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 21 C -0.10 -6.00 5.50 84.86 0.47 -5.53 16 22 N -0.97 -61.38 13.70 21.65 0.30 -61.08 16 23 Si 1.13 52.58 29.92 68.60 2.05 54.63 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.18 4.29 6.44 42.14 0.27 4.56 16 28 C -0.11 -1.98 5.20 -11.54 -0.06 -2.04 16 29 C -0.13 -2.67 8.00 30.59 0.24 -2.42 16 30 C -0.16 -2.04 8.99 30.59 0.28 -1.77 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 0.93 6.47 -2.38 -0.02 0.92 16 36 H 0.20 4.35 7.53 -2.91 -0.02 4.32 16 37 H 0.40 10.83 5.50 -92.71 -0.51 10.32 16 38 H 0.07 1.62 7.92 -2.39 -0.02 1.60 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 44 H 0.03 1.00 6.34 -2.39 -0.02 0.98 16 45 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.36 18.97 6.41 -92.71 -0.59 18.38 16 47 H 0.24 15.31 6.77 -92.71 -0.63 14.69 16 48 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.07 1.81 7.53 -2.39 -0.02 1.79 16 50 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.09 1.25 7.98 -2.39 -0.02 1.23 16 Total: -1.00 -74.73 412.50 2.62 -72.11 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -0.03 Total: 43.22 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 6.05 Total: -11.04 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -5.39 Total: -140.55 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.05 Total: 54.63 kcal Total: -74.73 2.62 -72.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732628019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.543 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds