Wall clock time and date at job start Wed Apr 1 2020 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47562 * 2 1 4 4 N 1.28448 * 125.18940 * 85.13607 * 3 2 1 5 5 C 1.30862 * 110.92872 * 179.97438 * 4 3 2 6 6 C 1.50703 * 126.06582 * 179.97438 * 5 4 3 7 7 C 1.53005 * 117.49269 * 163.77347 * 6 5 4 8 8 C 1.53002 * 117.49451 * 95.11717 * 6 5 4 9 9 C 1.39665 * 107.86088 * 0.02562 * 5 4 3 10 10 C 1.36601 * 125.19424 * 265.12099 * 3 2 1 11 11 C 1.47161 * 126.88366 * 359.97438 * 10 3 2 12 12 O 1.21627 * 119.99645 * 4.78138 * 11 10 3 13 13 N 1.34771 * 120.00101 * 184.78038 * 11 10 3 14 14 C 1.47024 * 125.64772 * 4.24458 * 13 11 10 15 15 C 1.54329 * 107.26780 * 181.02200 * 14 13 11 16 16 C 1.55154 * 102.94540 * 22.19199 * 15 14 13 17 17 H 1.08995 * 111.00270 * 82.57268 * 16 15 14 18 18 C 1.53000 * 111.00435 * 206.38791 * 16 15 14 19 19 H 1.08999 * 109.47239 * 59.99698 * 18 16 15 20 20 C 1.52999 * 109.46598 * 299.99584 * 18 16 15 21 21 N 1.46501 * 109.47075 * 180.02562 * 18 16 15 22 22 C 1.36928 * 119.99918 * 204.99640 * 21 18 16 23 23 H 1.08007 * 120.00209 * 0.02562 * 22 21 18 24 24 C 1.38812 * 120.00055 * 179.97438 * 22 21 18 25 25 N 1.31626 * 120.00022 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99995 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.46795 * 89.99916 * 26 24 22 28 28 H 1.48492 * 109.46951 * 209.99954 * 26 24 22 29 29 H 1.48501 * 109.46988 * 330.00247 * 26 24 22 30 30 C 1.47423 * 125.64967 * 183.93150 * 13 11 10 31 31 H 1.09005 * 109.47195 * 54.99413 * 1 2 3 32 32 H 1.09001 * 109.47447 * 175.00076 * 1 2 3 33 33 H 1.09005 * 109.47157 * 294.99896 * 1 2 3 34 34 H 1.09004 * 109.47012 * 239.99984 * 2 1 3 35 35 H 1.09000 * 109.46739 * 120.00549 * 2 1 3 36 36 H 1.08993 * 115.55449 * 309.44209 * 6 5 4 37 37 H 1.08997 * 117.50252 * 0.02562 * 7 6 5 38 38 H 1.09004 * 117.49458 * 145.02390 * 7 6 5 39 39 H 1.09007 * 117.49595 * 214.97115 * 8 6 5 40 40 H 1.08994 * 117.50181 * 359.97317 * 8 6 5 41 41 H 1.08004 * 127.32057 * 180.02562 * 9 5 4 42 42 H 1.08996 * 109.87989 * 300.43438 * 14 13 11 43 43 H 1.08998 * 109.88214 * 61.45389 * 14 13 11 44 44 H 1.09004 * 110.71602 * 140.55991 * 15 14 13 45 45 H 1.09005 * 110.71578 * 263.64707 * 15 14 13 46 46 H 1.09001 * 109.47885 * 300.00237 * 20 18 16 47 47 H 1.09004 * 109.47185 * 60.00984 * 20 18 16 48 48 H 1.09009 * 109.47018 * 179.97438 * 20 18 16 49 49 H 0.97004 * 119.99911 * 24.99477 * 21 18 16 50 50 H 0.97001 * 119.99872 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.37022 * 274.75456 * 30 13 11 52 52 H 1.09004 * 110.36302 * 37.07482 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1813 2.1086 1.0460 5 6 2.6304 3.2951 0.7248 6 6 2.9399 4.4160 1.6834 7 6 3.7996 5.5710 1.1658 8 6 4.3879 4.5622 2.1554 9 6 2.7709 3.3384 -0.6641 10 6 2.3704 2.0917 -1.1123 11 6 2.3322 1.6249 -2.5073 12 8 1.8753 0.5286 -2.7694 13 7 2.8034 2.4121 -3.4945 14 6 3.4596 3.7151 -3.3120 15 6 3.8031 4.2557 -4.7161 16 6 2.8147 3.4899 -5.6348 17 1 1.8369 3.9714 -5.6439 18 6 3.3726 3.3609 -7.0536 19 1 4.3164 2.8164 -7.0249 20 6 3.6058 4.7553 -7.6385 21 7 2.4145 2.6347 -7.8909 22 6 2.8496 1.9546 -8.9967 23 1 3.8992 1.9531 -9.2516 24 6 1.9419 1.2660 -9.7898 25 7 2.3603 0.6118 -10.8526 26 14 0.1267 1.2680 -9.3487 27 1 -0.5426 2.4157 -10.0122 28 1 -0.4953 -0.0002 -9.8068 29 1 -0.0248 1.3902 -7.8765 30 6 2.7522 2.1064 -4.9358 31 1 -0.3634 0.5896 -0.8418 32 1 -0.3634 -1.0237 -0.0896 33 1 -0.3634 0.4343 0.9314 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 2.1514 4.6559 2.3966 37 1 4.1409 5.5203 0.1319 38 1 3.5768 6.5707 1.5389 39 1 4.5520 4.8987 3.1792 40 1 5.1165 3.8475 1.7730 41 1 3.1190 4.1682 -1.2614 42 1 2.7829 4.4031 -2.8053 43 1 4.3706 3.5926 -2.7263 44 1 3.6260 5.3299 -4.7696 45 1 4.8356 4.0230 -4.9769 46 1 2.6620 5.2999 -7.6672 47 1 4.3185 5.2960 -7.0157 48 1 4.0037 4.6635 -8.6492 49 1 1.4719 2.6357 -7.6618 50 1 1.7259 0.1309 -11.4069 51 1 3.6064 1.4940 -5.2243 52 1 1.8197 1.5989 -5.1830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733530002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:56 Heat of formation + Delta-G solvation = 89.486851 kcal Electronic energy + Delta-G solvation = -31039.592998 eV Core-core repulsion = 27042.345321 eV Total energy + Delta-G solvation = -3997.247677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.82709 -39.98208 -38.00711 -37.45695 -35.54086 -34.39862 -32.66960 -31.43413 -30.64020 -29.92652 -29.00054 -28.32175 -24.97513 -24.61400 -23.89780 -22.94198 -22.59968 -21.71804 -21.46921 -20.55574 -19.92219 -18.98077 -17.76625 -17.24278 -16.81110 -16.41095 -16.02176 -15.72554 -15.05059 -14.93904 -14.80121 -14.77072 -14.22120 -14.04115 -13.74716 -13.58468 -13.10229 -12.95975 -12.78822 -12.62729 -12.49390 -12.42391 -12.23820 -12.13281 -11.86970 -11.81592 -11.63706 -11.51477 -11.22382 -11.04400 -10.93943 -10.91840 -10.68537 -10.60952 -10.51166 -10.28798 -10.08574 -9.96125 -9.59265 -9.30441 -9.05415 -8.95609 -8.69994 -7.29629 -5.77787 -3.13706 1.09707 2.09992 2.26043 2.91850 3.05871 3.37900 3.40820 3.46276 3.51004 4.02876 4.18580 4.47964 4.52480 4.58538 4.58809 4.62844 4.71567 4.72814 4.81729 4.93425 4.96640 5.03596 5.13185 5.21667 5.28288 5.33392 5.38520 5.40665 5.45115 5.51504 5.56417 5.60762 5.63307 5.73416 5.78019 5.78802 5.82075 5.83576 5.91511 6.01941 6.08844 6.14370 6.24598 6.26797 6.33470 6.43583 6.54277 6.73826 6.95053 7.33902 7.84000 7.97299 7.99205 8.41015 9.19039 9.91774 10.10639 11.40474 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.002762 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.575767 B =10136.251090 C =11738.112678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.253 5.253 4 N -0.270 5.270 5 C 0.050 3.950 6 C -0.072 4.072 7 C -0.166 4.166 8 C -0.167 4.167 9 C -0.194 4.194 10 C -0.027 4.027 11 C 0.600 3.400 12 O -0.538 6.538 13 N -0.601 5.601 14 C 0.092 3.908 15 C -0.124 4.124 16 C -0.106 4.106 17 H 0.082 0.918 18 C 0.190 3.810 19 H 0.058 0.942 20 C -0.164 4.164 21 N -0.749 5.749 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.120 3.880 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.169 0.831 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.079 0.921 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 9.577 26.797 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.041 5.041 4 N -0.103 5.103 5 C -0.106 4.106 6 C -0.092 4.092 7 C -0.204 4.204 8 C -0.205 4.205 9 C -0.223 4.223 10 C -0.155 4.155 11 C 0.387 3.613 12 O -0.416 6.416 13 N -0.334 5.334 14 C -0.031 4.031 15 C -0.163 4.163 16 C -0.126 4.126 17 H 0.100 0.900 18 C 0.080 3.920 19 H 0.076 0.924 20 C -0.224 4.224 21 N -0.392 5.392 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.713 3.287 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 C -0.001 4.001 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.187 0.813 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.097 0.903 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.080 7.960 27.413 28.621 hybrid contribution -1.224 0.388 -0.491 1.374 sum 0.856 8.347 26.923 28.200 Atomic orbital electron populations 1.22067 0.93353 1.03651 1.02933 1.22238 0.96375 0.76337 1.05900 1.45806 1.44196 1.12302 1.01762 1.73053 1.19197 1.04437 1.13637 1.20995 1.04188 0.92684 0.92718 1.20007 0.95057 0.94334 0.99800 1.23017 1.02984 0.94350 1.00036 1.23002 0.95287 1.02454 0.99757 1.22583 1.07677 0.97228 0.94788 1.21337 1.10326 0.94018 0.89843 1.16489 0.78413 0.83911 0.82437 1.90804 1.47235 1.20127 1.83445 1.48179 1.57790 1.20240 1.07206 1.22490 0.97113 0.84535 0.98939 1.22717 1.00593 1.00509 0.92448 1.22771 0.99641 0.94260 0.95914 0.89962 1.20124 0.93411 0.92125 0.86321 0.92361 1.22414 1.00289 0.98255 1.01488 1.42796 1.05055 1.61159 1.30154 1.19029 0.95248 1.23145 0.99757 0.89182 1.24658 0.97367 0.99734 0.97241 1.69699 1.33665 1.37531 1.17224 0.86586 0.87080 0.77213 0.77861 1.21172 1.21792 1.20289 1.22414 1.03684 0.97667 0.76326 0.91649 0.89992 0.91899 0.86274 0.88528 0.86504 0.88310 0.88054 0.88315 0.88680 0.81344 0.90738 0.90919 0.89662 0.89936 0.93582 0.93967 0.92244 0.80680 0.93069 0.90322 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.11 1.19 6.61 -4.05 -0.03 1.16 16 3 N -0.25 -3.23 3.35 -57.14 -0.19 -3.42 16 4 N -0.27 -3.44 11.90 33.64 0.40 -3.04 16 5 C 0.05 0.56 6.85 -82.47 -0.57 -0.01 16 6 C -0.07 -0.59 6.33 -91.77 -0.58 -1.18 16 7 C -0.17 -1.01 10.03 -26.69 -0.27 -1.28 16 8 C -0.17 -1.13 10.24 -26.69 -0.27 -1.41 16 9 C -0.19 -2.13 8.78 -38.99 -0.34 -2.47 16 10 C -0.03 -0.35 6.91 -82.06 -0.57 -0.92 16 11 C 0.60 8.98 7.82 -12.64 -0.10 8.88 16 12 O -0.54 -9.52 14.93 5.25 0.08 -9.44 16 13 N -0.60 -8.08 3.32 -171.75 -0.57 -8.65 16 14 C 0.09 0.88 5.07 -3.06 -0.02 0.87 16 15 C -0.12 -1.21 5.28 -24.89 -0.13 -1.34 16 16 C -0.11 -1.45 2.67 -88.35 -0.24 -1.68 16 17 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 18 C 0.19 3.25 2.43 -67.93 -0.17 3.08 16 19 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 20 C -0.16 -2.54 9.27 37.16 0.34 -2.20 16 21 N -0.75 -16.65 4.78 -53.43 -0.26 -16.91 16 22 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 23 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 24 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -29.06 13.97 55.49 0.78 -28.29 16 26 Si 0.88 22.08 27.74 -169.99 -4.71 17.36 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 30 C 0.12 1.85 6.22 -2.41 -0.01 1.83 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.41 6.14 -51.93 -0.32 1.09 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.57 7.22 -51.93 -0.37 0.19 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.17 1.42 4.09 -52.48 -0.21 1.20 16 42 H 0.07 0.61 6.21 -51.93 -0.32 0.29 16 43 H 0.07 0.60 7.62 -51.93 -0.40 0.21 16 44 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 45 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.04 0.51 7.28 -51.93 -0.38 0.14 16 48 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 49 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 50 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 51 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 52 H 0.08 1.47 8.08 -51.93 -0.42 1.06 16 LS Contribution 411.76 15.07 6.21 6.21 Total: -1.00 -33.64 411.76 -9.65 -43.29 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.57 Total: 7.40 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.81 Total: -4.51 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.16 Total: -60.31 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.64 -9.65 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733530002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.777 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds