Wall clock time and date at job start Wed Apr 1 2020 04:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47090 * 2 1 4 4 N 1.28444 * 125.18994 * 274.71949 * 3 2 1 5 5 C 1.30866 * 110.92577 * 179.68031 * 4 3 2 6 6 C 1.50697 * 126.06940 * 180.30581 * 5 4 3 7 7 C 1.53003 * 117.50087 * 163.92121 * 6 5 4 8 8 C 1.53008 * 117.49940 * 95.26101 * 6 5 4 9 9 C 1.39676 * 107.86149 * 0.45160 * 5 4 3 10 10 C 1.36601 * 125.19220 * 94.68300 * 3 2 1 11 11 C 1.47169 * 126.88293 * 359.97438 * 10 3 2 12 12 O 1.21632 * 119.99891 * 354.31855 * 11 10 3 13 13 N 1.34771 * 119.99966 * 174.31357 * 11 10 3 14 14 C 1.47023 * 125.64958 * 4.82218 * 13 11 10 15 15 C 1.54332 * 107.26360 * 178.84862 * 14 13 11 16 16 C 1.55158 * 103.02388 * 338.13674 * 15 14 13 17 17 H 1.09005 * 111.03333 * 277.22322 * 16 15 14 18 18 C 1.52993 * 111.00495 * 153.38693 * 16 15 14 19 19 H 1.09000 * 109.47199 * 306.34963 * 18 16 15 20 20 C 1.53000 * 109.47543 * 66.35182 * 18 16 15 21 21 N 1.46502 * 109.46848 * 186.35351 * 18 16 15 22 22 C 1.36939 * 120.00027 * 154.99783 * 21 18 16 23 23 H 1.08002 * 119.99666 * 0.02562 * 22 21 18 24 24 C 1.38809 * 119.99971 * 179.97438 * 22 21 18 25 25 N 1.31615 * 120.00098 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99912 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47243 * 60.00361 * 26 24 22 28 28 H 1.48503 * 109.46924 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47330 * 300.00324 * 26 24 22 30 30 C 1.47428 * 125.64608 * 185.12160 * 13 11 10 31 31 H 1.08998 * 109.47403 * 175.00694 * 1 2 3 32 32 H 1.08995 * 109.47366 * 295.00984 * 1 2 3 33 33 H 1.09000 * 109.47054 * 55.00724 * 1 2 3 34 34 H 1.08998 * 109.47144 * 240.00093 * 2 1 3 35 35 H 1.09000 * 109.47035 * 119.99834 * 2 1 3 36 36 H 1.08998 * 115.55119 * 309.59202 * 6 5 4 37 37 H 1.09005 * 117.49800 * 359.97438 * 7 6 5 38 38 H 1.08996 * 117.50512 * 145.01866 * 7 6 5 39 39 H 1.08995 * 117.49670 * 214.97666 * 8 6 5 40 40 H 1.08997 * 117.49579 * 359.97438 * 8 6 5 41 41 H 1.07998 * 127.31875 * 179.82850 * 9 5 4 42 42 H 1.08997 * 109.88012 * 298.38730 * 14 13 11 43 43 H 1.08998 * 109.88242 * 59.55340 * 14 13 11 44 44 H 1.09008 * 110.84555 * 219.66858 * 15 14 13 45 45 H 1.08994 * 110.67047 * 96.52068 * 15 14 13 46 46 H 1.09000 * 109.47052 * 59.99692 * 20 18 16 47 47 H 1.08992 * 109.47039 * 180.02562 * 20 18 16 48 48 H 1.09005 * 109.46751 * 300.00209 * 20 18 16 49 49 H 0.96996 * 120.00411 * 334.99174 * 21 18 16 50 50 H 0.97000 * 120.00004 * 179.97438 * 25 24 22 51 51 H 1.08996 * 110.37120 * 322.93383 * 30 13 11 52 52 H 1.09007 * 110.36476 * 85.14914 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1836 2.1079 -1.0461 5 6 2.6250 3.2971 -0.7242 6 6 2.9288 4.4200 -1.6822 7 6 3.0700 5.8275 -1.0990 8 6 1.8326 5.4602 -1.9220 9 6 2.7676 3.3397 0.6646 10 6 2.3666 2.0931 1.1126 11 6 2.3230 1.6281 2.5082 12 8 1.8494 0.5392 2.7719 13 7 2.8078 2.4088 3.4941 14 6 3.3135 3.7796 3.3312 15 6 3.7326 4.2822 4.7289 16 6 2.9215 3.3697 5.6864 17 1 1.9058 3.7435 5.8162 18 6 3.6269 3.2267 7.0365 19 1 4.6524 2.8934 6.8771 20 6 3.6355 4.5785 7.7531 21 7 2.9158 2.2434 7.8572 22 6 3.5806 1.5673 8.8453 23 1 4.6290 1.7593 9.0197 24 6 2.9067 0.6359 9.6233 25 7 1.6289 0.4023 9.4110 26 14 3.8137 -0.2869 10.9706 27 1 4.3527 0.6826 11.9580 28 1 2.8768 -1.2172 11.6503 29 1 4.9326 -1.0599 10.3743 30 6 2.9245 2.0272 4.9133 31 1 -0.3634 -1.0237 -0.0894 32 1 -0.3634 0.4344 0.9313 33 1 -0.3633 0.5893 -0.8419 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5676 4.1584 -2.5258 37 1 2.9427 5.9413 -0.0224 38 1 3.8014 6.4919 -1.5590 39 1 1.7506 5.8832 -2.9232 40 1 0.8916 5.3320 -1.3871 41 1 3.1129 4.1703 1.2621 42 1 4.1737 3.7803 2.6617 43 1 2.5278 4.4193 2.9294 44 1 3.4547 5.3275 4.8647 45 1 4.8032 4.1464 4.8816 46 1 2.6100 4.9118 7.9125 47 1 4.1385 4.4767 8.7147 48 1 4.1646 5.3101 7.1424 49 1 1.9741 2.0712 7.7009 50 1 1.1581 -0.2488 9.9544 51 1 2.0738 1.4151 5.2129 52 1 3.8571 1.4901 5.0863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733530012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:04 Heat of formation + Delta-G solvation = 84.521253 kcal Electronic energy + Delta-G solvation = -30962.446026 eV Core-core repulsion = 26964.983025 eV Total energy + Delta-G solvation = -3997.463001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.75928 -39.86451 -37.89211 -37.38823 -35.36006 -34.32481 -32.62974 -31.32723 -30.42406 -29.85433 -28.58394 -28.10424 -24.91123 -24.55170 -23.98683 -22.91388 -22.54422 -21.69979 -21.50183 -20.48070 -19.69110 -18.92758 -17.54909 -16.94565 -16.57825 -16.32598 -16.03020 -15.63972 -15.09522 -14.83583 -14.71074 -14.55406 -14.19842 -13.83114 -13.77298 -13.46784 -13.13462 -12.90282 -12.70963 -12.64674 -12.35224 -12.21461 -12.12058 -12.06193 -11.81320 -11.60261 -11.45580 -11.35434 -11.17763 -10.89969 -10.88976 -10.78560 -10.63415 -10.58108 -10.42163 -10.25331 -10.02076 -9.87322 -9.62601 -9.23185 -8.99355 -8.91426 -8.58328 -6.97125 -5.75879 -3.05183 1.17735 2.17407 2.31802 3.01789 3.15223 3.44191 3.48824 3.49850 3.55633 4.09391 4.27101 4.54050 4.57816 4.61695 4.63831 4.69149 4.79629 4.86659 4.94156 5.00158 5.05003 5.09561 5.24640 5.28813 5.34282 5.40729 5.44857 5.50549 5.54519 5.60680 5.62706 5.68845 5.82938 5.85626 5.86305 5.88047 5.89766 5.90393 6.02267 6.13658 6.23588 6.28554 6.34806 6.36950 6.52846 6.60784 6.60831 6.83161 7.05491 7.45717 7.69569 7.91394 8.09024 8.42050 9.53415 10.09891 10.44235 11.46484 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002558 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.987677 B =10942.342549 C =12487.373308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.253 5.253 4 N -0.271 5.271 5 C 0.050 3.950 6 C -0.072 4.072 7 C -0.166 4.166 8 C -0.168 4.168 9 C -0.195 4.195 10 C -0.026 4.026 11 C 0.599 3.401 12 O -0.537 6.537 13 N -0.601 5.601 14 C 0.093 3.907 15 C -0.126 4.126 16 C -0.102 4.102 17 H 0.082 0.918 18 C 0.185 3.815 19 H 0.049 0.951 20 C -0.164 4.164 21 N -0.724 5.724 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 C 0.123 3.877 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.037 0.963 49 H 0.384 0.616 50 H 0.256 0.744 51 H 0.087 0.913 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 10.531 -23.089 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.041 5.041 4 N -0.104 5.104 5 C -0.107 4.107 6 C -0.091 4.091 7 C -0.204 4.204 8 C -0.206 4.206 9 C -0.223 4.223 10 C -0.154 4.154 11 C 0.387 3.613 12 O -0.415 6.415 13 N -0.334 5.334 14 C -0.030 4.030 15 C -0.164 4.164 16 C -0.122 4.122 17 H 0.100 0.900 18 C 0.075 3.925 19 H 0.067 0.933 20 C -0.224 4.224 21 N -0.366 5.366 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 C 0.002 3.998 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.186 0.814 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.106 0.894 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.667 8.938 -23.768 25.448 hybrid contribution 0.339 -0.130 1.421 1.466 sum 2.006 8.808 -22.348 24.104 Atomic orbital electron populations 1.22074 0.93357 1.03472 1.03204 1.22230 0.96383 0.76334 1.05857 1.45791 1.44232 1.12300 1.01743 1.73043 1.19166 1.04500 1.13709 1.20986 1.04237 0.92704 0.92730 1.20001 1.03477 0.86448 0.99196 1.23015 1.00644 0.96261 1.00471 1.23001 0.93894 1.02061 1.01612 1.22549 1.07585 0.97380 0.94798 1.21376 1.10039 0.94065 0.89916 1.16483 0.78472 0.83986 0.82402 1.90811 1.46029 1.21251 1.83378 1.48194 1.61182 1.15119 1.08903 1.22444 0.98695 0.82882 0.98946 1.22726 1.01155 1.00022 0.92517 1.22681 1.00342 0.93715 0.95435 0.89984 1.20154 0.95077 0.89862 0.87442 0.93266 1.22438 1.00864 0.98228 1.00867 1.42414 1.10576 1.44999 1.38590 1.19145 0.93862 1.15477 1.08560 0.91284 1.24727 0.95904 1.00119 1.00036 1.69643 1.08107 1.37684 1.42502 0.86307 0.78521 0.79580 0.81986 1.21332 1.21750 1.21302 1.22340 1.03502 0.97598 0.76401 0.90051 0.91427 0.91940 0.88597 0.86281 0.86510 0.88320 0.88061 0.88335 0.88705 0.81425 0.90857 0.91047 0.89834 0.90179 0.93500 0.92746 0.94372 0.78254 0.93455 0.89428 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 1.26 6.59 -4.04 -0.03 1.23 16 3 N -0.25 -3.37 3.35 -57.14 -0.19 -3.56 16 4 N -0.27 -3.58 11.90 33.64 0.40 -3.18 16 5 C 0.05 0.57 6.85 -82.47 -0.57 0.01 16 6 C -0.07 -0.62 6.33 -91.77 -0.58 -1.20 16 7 C -0.17 -1.08 10.03 -26.69 -0.27 -1.35 16 8 C -0.17 -1.21 10.24 -26.69 -0.27 -1.49 16 9 C -0.19 -2.24 8.72 -38.99 -0.34 -2.58 16 10 C -0.03 -0.35 6.92 -82.06 -0.57 -0.92 16 11 C 0.60 9.46 7.81 -12.64 -0.10 9.36 16 12 O -0.54 -9.99 14.90 5.25 0.08 -9.91 16 13 N -0.60 -8.63 3.33 -171.87 -0.57 -9.20 16 14 C 0.09 0.97 5.01 -3.06 -0.02 0.96 16 15 C -0.13 -1.34 5.58 -24.89 -0.14 -1.48 16 16 C -0.10 -1.50 2.63 -88.47 -0.23 -1.73 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 18 C 0.18 3.33 2.41 -67.93 -0.16 3.17 16 19 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 20 C -0.16 -2.69 9.34 37.16 0.35 -2.34 16 21 N -0.72 -17.20 4.82 -53.43 -0.26 -17.45 16 22 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 26 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C 0.12 2.03 6.11 -2.53 -0.02 2.01 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.12 1.49 6.18 -51.93 -0.32 1.17 16 36 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.62 7.22 -51.93 -0.37 0.24 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.17 1.51 4.08 -52.49 -0.21 1.29 16 42 H 0.07 0.66 6.93 -51.93 -0.36 0.30 16 43 H 0.07 0.65 6.99 -51.93 -0.36 0.29 16 44 H 0.08 0.73 8.13 -51.92 -0.42 0.31 16 45 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 49 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 50 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 51 H 0.09 1.72 7.99 -51.93 -0.41 1.30 16 52 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 LS Contribution 415.06 15.07 6.25 6.25 Total: -1.00 -32.56 415.06 -10.01 -42.57 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.63 Total: 9.04 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.80 Total: -4.62 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.10 Total: -60.57 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.56 -10.01 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733530012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.093 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds