Wall clock time and date at job start Wed Apr 1 2020 04:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47377 * 2 1 4 4 C 1.34255 * 125.75832 * 124.99452 * 3 2 1 5 5 C 1.38050 * 107.42005 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41558 * 179.97438 * 5 4 3 7 7 O 1.21597 * 120.00069 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00013 * 0.02562 * 6 5 4 9 9 C 1.47023 * 125.64675 * 0.02841 * 8 6 5 10 10 C 1.54324 * 107.27096 * 178.89312 * 9 8 6 11 11 C 1.55164 * 102.94265 * 337.80756 * 10 9 8 12 12 H 1.09001 * 111.00208 * 277.38928 * 11 10 9 13 13 C 1.52992 * 111.00379 * 153.57706 * 11 10 9 14 14 H 1.09002 * 109.47103 * 299.99763 * 13 11 10 15 15 C 1.52997 * 109.47482 * 60.00011 * 13 11 10 16 16 N 1.46497 * 109.47081 * 180.02562 * 13 11 10 17 17 C 1.36940 * 120.00565 * 154.99853 * 16 13 11 18 18 H 1.08004 * 119.99402 * 359.97438 * 17 16 13 19 19 C 1.38815 * 120.00150 * 179.97438 * 17 16 13 20 20 N 1.31618 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47120 * 59.99555 * 21 19 17 23 23 H 1.48500 * 109.47078 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46925 * 300.00019 * 21 19 17 25 25 C 1.47420 * 125.64974 * 179.97438 * 8 6 5 26 26 C 1.41291 * 107.16753 * 0.24220 * 5 4 3 27 27 C 1.50693 * 125.98481 * 179.73754 * 26 5 4 28 28 C 1.53005 * 117.49945 * 188.74724 * 27 26 5 29 29 C 1.53005 * 117.50219 * 120.08999 * 27 26 5 30 30 N 1.30448 * 108.02395 * 359.59040 * 26 5 4 31 31 H 1.09002 * 109.46682 * 60.00121 * 1 2 3 32 32 H 1.09001 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47356 * 300.01038 * 1 2 3 34 34 H 1.08999 * 109.47356 * 239.98962 * 2 1 3 35 35 H 1.09002 * 109.46682 * 119.99879 * 2 1 3 36 36 H 1.08008 * 126.28973 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.88492 * 59.47628 * 9 8 6 38 38 H 1.08999 * 109.88421 * 298.30971 * 9 8 6 39 39 H 1.08998 * 110.72440 * 219.44573 * 10 9 8 40 40 H 1.09003 * 110.71841 * 96.16903 * 10 9 8 41 41 H 1.09002 * 109.47153 * 59.99783 * 15 13 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 15 13 11 43 43 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 44 44 H 0.97006 * 119.99921 * 334.99446 * 16 13 11 45 45 H 0.96997 * 119.99796 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.36515 * 85.33447 * 25 8 6 47 47 H 1.09000 * 110.36924 * 323.01845 * 25 8 6 48 48 H 1.09003 * 115.55420 * 334.41528 * 27 26 5 49 49 H 1.09004 * 117.49470 * 359.97438 * 28 27 26 50 50 H 1.08996 * 117.50143 * 145.01829 * 28 27 26 51 51 H 1.08997 * 117.49909 * 214.98117 * 29 27 26 52 52 H 1.09004 * 117.49245 * 359.97003 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0715 3.2308 0.5363 6 6 3.9326 4.2034 1.2335 7 8 4.0256 5.3417 0.8163 8 7 4.6169 3.8307 2.3333 9 6 4.5967 2.4928 2.9425 10 6 5.5475 2.5283 4.1576 11 6 6.4842 3.7215 3.8312 12 1 7.2874 3.4156 3.1609 13 6 7.0483 4.3418 5.1109 14 1 6.2282 4.7012 5.7326 15 6 7.8469 3.2874 5.8798 16 7 7.9254 5.4629 4.7646 17 6 8.1370 6.4709 5.6670 18 1 7.6569 6.4397 6.6339 19 6 8.9687 7.5329 5.3390 20 7 9.5542 7.5707 4.1608 21 14 9.2578 8.9076 6.5703 22 1 9.8621 8.3468 7.8054 23 1 10.1773 9.9141 5.9815 24 1 7.9633 9.5550 6.9025 25 6 5.5104 4.6967 3.1238 26 6 2.2939 3.4751 -0.6178 27 6 2.1968 4.7833 -1.3594 28 6 1.1426 4.8934 -2.4628 29 6 2.6260 4.7966 -2.8280 30 7 1.6774 2.3690 -0.9307 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5140 0.8899 34 1 1.8934 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.3133 1.4023 1.7344 37 1 4.9436 1.7520 2.2220 38 1 3.5859 2.2497 3.2698 39 1 6.1155 1.6008 4.2302 40 1 4.9918 2.7144 5.0767 41 1 8.6669 2.9280 5.2582 42 1 7.1938 2.4536 6.1375 43 1 8.2491 3.7295 6.7914 44 1 8.3565 5.4911 3.8961 45 1 10.1350 8.3130 3.9315 46 1 4.9379 5.2614 3.8596 47 1 6.0599 5.3731 2.4692 48 1 2.4008 5.6756 -0.7675 49 1 0.5196 4.0193 -2.6526 50 1 0.6533 5.8580 -2.5970 51 1 3.1120 5.6976 -3.2022 52 1 2.9791 3.8590 -3.2575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733530744.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:22 Heat of formation + Delta-G solvation = 83.795279 kcal Electronic energy + Delta-G solvation = -30723.768465 eV Core-core repulsion = 26726.273983 eV Total energy + Delta-G solvation = -3997.494482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70149 -39.59901 -37.64896 -37.13599 -35.16565 -34.51018 -32.53002 -30.98964 -30.41840 -29.91082 -28.50464 -27.93850 -24.96587 -24.37565 -23.92636 -22.44500 -22.40322 -21.71059 -21.49789 -19.94397 -19.63104 -18.87118 -17.34149 -16.92219 -16.55991 -16.09370 -15.86166 -15.36301 -15.29509 -14.78902 -14.74250 -14.31134 -14.10986 -13.74205 -13.68606 -13.30170 -13.10239 -12.92698 -12.70407 -12.55352 -12.53359 -12.15335 -12.00570 -11.97024 -11.91583 -11.60262 -11.47620 -11.35005 -11.06246 -10.91802 -10.84520 -10.76887 -10.58202 -10.49290 -10.43218 -10.20405 -9.88755 -9.62332 -9.54652 -9.35588 -8.87305 -8.79318 -8.38880 -6.92771 -5.71904 -3.00977 1.36036 2.00108 2.05400 3.18990 3.47230 3.49543 3.51794 3.52852 3.91260 3.99936 4.29046 4.40484 4.48647 4.56365 4.65068 4.68223 4.69473 4.79598 4.93071 4.95804 5.02739 5.07414 5.18093 5.23896 5.31080 5.36527 5.42521 5.54524 5.58154 5.58533 5.64290 5.68019 5.77838 5.88027 5.89772 5.94810 6.06030 6.07181 6.17611 6.19206 6.31671 6.37806 6.43000 6.45258 6.57224 6.62741 6.67048 6.87255 7.08836 7.42093 7.73105 7.75245 8.45243 8.46136 9.57371 10.14339 10.48639 11.50542 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.002490 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.543192 B =11242.456259 C =12868.695636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.361 5.361 4 C 0.083 3.917 5 C -0.273 4.273 6 C 0.604 3.396 7 O -0.536 6.536 8 N -0.617 5.617 9 C 0.094 3.906 10 C -0.125 4.125 11 C -0.101 4.101 12 H 0.081 0.919 13 C 0.185 3.815 14 H 0.049 0.951 15 C -0.164 4.164 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.122 3.878 26 C 0.163 3.837 27 C -0.081 4.081 28 C -0.169 4.169 29 C -0.159 4.159 30 N -0.299 5.299 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.192 0.808 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.053 0.947 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.140 0.860 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.102 0.898 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 -19.548 -8.659 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.139 5.139 4 C -0.067 4.067 5 C -0.287 4.287 6 C 0.394 3.606 7 O -0.414 6.414 8 N -0.351 5.351 9 C -0.029 4.029 10 C -0.163 4.163 11 C -0.122 4.122 12 H 0.100 0.900 13 C 0.075 3.925 14 H 0.067 0.933 15 C -0.224 4.224 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 C 0.001 3.999 26 C -0.004 4.004 27 C -0.101 4.101 28 C -0.207 4.207 29 C -0.197 4.197 30 N -0.120 5.120 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.209 0.791 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.157 0.843 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.120 0.880 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.987 -19.519 -9.628 28.882 hybrid contribution 1.039 0.872 1.136 1.770 sum -17.948 -18.646 -8.491 27.238 Atomic orbital electron populations 1.22056 0.93442 1.03009 1.03832 1.21799 0.96428 0.76978 1.04138 1.48498 1.34534 1.10361 1.20542 1.23870 0.93192 0.94195 0.95460 1.20182 1.10919 0.94398 1.03248 1.16847 0.78671 0.86531 0.78589 1.90765 1.64935 1.20028 1.65643 1.48372 1.46695 1.12631 1.27355 1.22305 0.99625 0.85496 0.95488 1.22705 0.97037 0.99654 0.96931 1.22671 0.96547 0.94151 0.98782 0.90046 1.20140 0.92621 0.88286 0.91498 0.93344 1.22450 1.00146 0.98594 1.01220 1.42411 1.54660 1.21430 1.18007 1.19147 1.22914 0.98808 0.96108 0.91317 1.24728 1.00259 0.98885 0.96952 1.69645 1.35039 1.32784 1.20474 0.86305 0.77584 0.82105 0.80399 1.21383 1.21755 1.21285 1.22245 0.90519 0.92953 0.94188 1.21408 0.92749 0.93276 0.92970 1.20534 1.05505 0.93556 0.90470 1.23007 0.92079 1.03399 1.02199 1.22960 0.97495 1.03498 0.95747 1.77040 1.24634 0.96603 1.13676 0.90952 0.90515 0.91927 0.89394 0.88311 0.79107 0.91651 0.91680 0.90046 0.90256 0.93539 0.94417 0.92808 0.78245 0.93470 0.91191 0.89691 0.84253 0.88313 0.88333 0.87995 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.09 37.16 0.37 -0.47 16 2 C 0.13 0.68 7.21 -4.04 -0.03 0.65 16 3 N -0.36 -3.51 3.65 -60.81 -0.22 -3.73 16 4 C 0.08 0.84 9.92 -16.56 -0.16 0.67 16 5 C -0.27 -3.79 6.10 -105.06 -0.64 -4.43 16 6 C 0.60 10.02 7.85 -12.52 -0.10 9.93 16 7 O -0.54 -10.83 15.25 5.28 0.08 -10.75 16 8 N -0.62 -9.09 3.33 -171.79 -0.57 -9.67 16 9 C 0.09 0.95 4.98 -3.06 -0.02 0.94 16 10 C -0.12 -1.33 5.29 -24.89 -0.13 -1.46 16 11 C -0.10 -1.54 2.65 -88.47 -0.23 -1.78 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 13 C 0.18 3.41 2.43 -67.94 -0.16 3.24 16 14 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 15 C -0.16 -2.72 9.27 37.16 0.34 -2.38 16 16 N -0.72 -17.54 4.97 -53.43 -0.27 -17.80 16 17 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 21 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.12 2.10 6.23 -2.53 -0.02 2.08 16 26 C 0.16 2.27 6.79 -82.02 -0.56 1.72 16 27 C -0.08 -1.07 5.65 -91.77 -0.52 -1.59 16 28 C -0.17 -1.79 10.14 -26.69 -0.27 -2.06 16 29 C -0.16 -1.79 10.24 -26.69 -0.27 -2.06 16 30 N -0.30 -3.74 11.92 33.89 0.40 -3.34 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.25 8.06 -51.93 -0.42 -0.17 16 36 H 0.19 1.28 4.43 -52.48 -0.23 1.05 16 37 H 0.07 0.55 6.85 -51.93 -0.36 0.19 16 38 H 0.07 0.52 7.01 -51.93 -0.36 0.16 16 39 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.49 7.28 -51.93 -0.38 0.12 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 1.26 7.98 -51.93 -0.41 0.85 16 47 H 0.08 1.73 8.04 -51.93 -0.42 1.32 16 48 H 0.14 2.08 6.73 -51.93 -0.35 1.73 16 49 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 50 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 417.11 15.07 6.29 6.29 Total: -1.00 -34.68 417.11 -9.91 -44.60 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.69 Total: 8.54 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.64 Total: -4.10 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.07 Total: -62.08 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.68 -9.91 -44.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733530744.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.393 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds