Wall clock time and date at job start Wed Apr 1 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47377 * 2 1 4 4 C 1.34255 * 125.75832 * 124.99452 * 3 2 1 5 5 C 1.38050 * 107.42005 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41558 * 179.97438 * 5 4 3 7 7 O 1.21597 * 120.00069 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00013 * 0.02562 * 6 5 4 9 9 C 1.47023 * 125.64675 * 0.02841 * 8 6 5 10 10 C 1.54324 * 107.27096 * 178.89312 * 9 8 6 11 11 C 1.55164 * 102.94265 * 337.80756 * 10 9 8 12 12 H 1.09001 * 111.00208 * 277.38928 * 11 10 9 13 13 C 1.52992 * 111.00379 * 153.57706 * 11 10 9 14 14 H 1.09002 * 109.47103 * 299.99763 * 13 11 10 15 15 C 1.52997 * 109.47482 * 60.00011 * 13 11 10 16 16 N 1.46497 * 109.47081 * 180.02562 * 13 11 10 17 17 C 1.36940 * 120.00565 * 154.99853 * 16 13 11 18 18 H 1.08004 * 119.99402 * 359.97438 * 17 16 13 19 19 C 1.38815 * 120.00150 * 179.97438 * 17 16 13 20 20 N 1.31618 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47120 * 59.99555 * 21 19 17 23 23 H 1.48500 * 109.47078 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46925 * 300.00019 * 21 19 17 25 25 C 1.47420 * 125.64974 * 179.97438 * 8 6 5 26 26 C 1.41291 * 107.16753 * 0.24220 * 5 4 3 27 27 C 1.50693 * 125.98481 * 179.73754 * 26 5 4 28 28 C 1.53005 * 117.49945 * 188.74724 * 27 26 5 29 29 C 1.53005 * 117.50219 * 120.08999 * 27 26 5 30 30 N 1.30448 * 108.02395 * 359.59040 * 26 5 4 31 31 H 1.09002 * 109.46682 * 60.00121 * 1 2 3 32 32 H 1.09001 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47356 * 300.01038 * 1 2 3 34 34 H 1.08999 * 109.47356 * 239.98962 * 2 1 3 35 35 H 1.09002 * 109.46682 * 119.99879 * 2 1 3 36 36 H 1.08008 * 126.28973 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.88492 * 59.47628 * 9 8 6 38 38 H 1.08999 * 109.88421 * 298.30971 * 9 8 6 39 39 H 1.08998 * 110.72440 * 219.44573 * 10 9 8 40 40 H 1.09003 * 110.71841 * 96.16903 * 10 9 8 41 41 H 1.09002 * 109.47153 * 59.99783 * 15 13 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 15 13 11 43 43 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 44 44 H 0.97006 * 119.99921 * 334.99446 * 16 13 11 45 45 H 0.96997 * 119.99796 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.36515 * 85.33447 * 25 8 6 47 47 H 1.09000 * 110.36924 * 323.01845 * 25 8 6 48 48 H 1.09003 * 115.55420 * 334.41528 * 27 26 5 49 49 H 1.09004 * 117.49470 * 359.97438 * 28 27 26 50 50 H 1.08996 * 117.50143 * 145.01829 * 28 27 26 51 51 H 1.08997 * 117.49909 * 214.98117 * 29 27 26 52 52 H 1.09004 * 117.49245 * 359.97003 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0715 3.2308 0.5363 6 6 3.9326 4.2034 1.2335 7 8 4.0256 5.3417 0.8163 8 7 4.6169 3.8307 2.3333 9 6 4.5967 2.4928 2.9425 10 6 5.5475 2.5283 4.1576 11 6 6.4842 3.7215 3.8312 12 1 7.2874 3.4156 3.1609 13 6 7.0483 4.3418 5.1109 14 1 6.2282 4.7012 5.7326 15 6 7.8469 3.2874 5.8798 16 7 7.9254 5.4629 4.7646 17 6 8.1370 6.4709 5.6670 18 1 7.6569 6.4397 6.6339 19 6 8.9687 7.5329 5.3390 20 7 9.5542 7.5707 4.1608 21 14 9.2578 8.9076 6.5703 22 1 9.8621 8.3468 7.8054 23 1 10.1773 9.9141 5.9815 24 1 7.9633 9.5550 6.9025 25 6 5.5104 4.6967 3.1238 26 6 2.2939 3.4751 -0.6178 27 6 2.1968 4.7833 -1.3594 28 6 1.1426 4.8934 -2.4628 29 6 2.6260 4.7966 -2.8280 30 7 1.6774 2.3690 -0.9307 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5140 0.8899 34 1 1.8934 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.3133 1.4023 1.7344 37 1 4.9436 1.7520 2.2220 38 1 3.5859 2.2497 3.2698 39 1 6.1155 1.6008 4.2302 40 1 4.9918 2.7144 5.0767 41 1 8.6669 2.9280 5.2582 42 1 7.1938 2.4536 6.1375 43 1 8.2491 3.7295 6.7914 44 1 8.3565 5.4911 3.8961 45 1 10.1350 8.3130 3.9315 46 1 4.9379 5.2614 3.8596 47 1 6.0599 5.3731 2.4692 48 1 2.4008 5.6756 -0.7675 49 1 0.5196 4.0193 -2.6526 50 1 0.6533 5.8580 -2.5970 51 1 3.1120 5.6976 -3.2022 52 1 2.9791 3.8590 -3.2575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733530744.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:21 Heat of formation + Delta-G solvation = 61.321808 kcal Electronic energy + Delta-G solvation = -30724.742988 eV Core-core repulsion = 26726.273983 eV Total energy + Delta-G solvation = -3998.469005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.58780 -40.76080 -38.89471 -38.10826 -36.74544 -35.12790 -34.29696 -32.31325 -31.48916 -30.71910 -29.99254 -29.21836 -25.94742 -25.64569 -25.40216 -23.34196 -23.17405 -23.03561 -22.37608 -21.05290 -21.00577 -19.80897 -19.13141 -18.06125 -17.53540 -17.24573 -16.82514 -16.49505 -16.38850 -16.10242 -15.66340 -15.58702 -15.39153 -14.99273 -14.84013 -14.43757 -14.32055 -14.12467 -13.82771 -13.53031 -13.45362 -13.28777 -13.12642 -13.09331 -12.85135 -12.75894 -12.57199 -12.45862 -12.40008 -12.34348 -12.23666 -11.95866 -11.86462 -11.75732 -11.65502 -11.51043 -11.40079 -11.31451 -10.91526 -10.79688 -10.22130 -9.81580 -9.47606 -8.96066 -7.90403 -5.17612 0.50734 0.98682 1.37299 1.46513 1.49782 1.55345 2.05722 2.36233 2.58301 2.99373 3.23660 3.42621 3.49636 3.54613 3.67522 3.85245 3.91040 3.93942 4.05973 4.09187 4.09965 4.17433 4.26307 4.31351 4.37146 4.43920 4.44436 4.60674 4.61403 4.69110 4.69714 4.70315 4.81579 4.86865 4.91069 4.92043 4.93417 5.01567 5.14612 5.15685 5.19549 5.21915 5.24023 5.28240 5.39131 5.44035 5.46335 5.55987 5.69881 5.91846 6.31961 6.49495 6.64660 7.24186 7.37489 8.16600 8.36804 9.33200 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.002490 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.543192 B =11242.456259 C =12868.695636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.351 5.351 4 C 0.113 3.887 5 C -0.310 4.310 6 C 0.595 3.405 7 O -0.593 6.593 8 N -0.616 5.616 9 C 0.086 3.914 10 C -0.111 4.111 11 C -0.093 4.093 12 H 0.074 0.926 13 C 0.178 3.822 14 H 0.045 0.955 15 C -0.152 4.152 16 N -0.739 5.739 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.300 1.300 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.145 3.855 27 C -0.108 4.108 28 C -0.148 4.148 29 C -0.155 4.155 30 N -0.313 5.313 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.234 0.766 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.031 0.969 44 H 0.369 0.631 45 H 0.248 0.752 46 H 0.052 0.948 47 H 0.034 0.966 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.113 0.887 51 H 0.107 0.893 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.827 -24.106 -7.202 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.129 5.129 4 C -0.039 4.039 5 C -0.325 4.325 6 C 0.387 3.613 7 O -0.475 6.475 8 N -0.348 5.348 9 C -0.035 4.035 10 C -0.149 4.149 11 C -0.113 4.113 12 H 0.092 0.908 13 C 0.070 3.930 14 H 0.063 0.937 15 C -0.212 4.212 16 N -0.378 5.378 17 C -0.362 4.362 18 H 0.094 0.906 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.797 3.203 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.208 1.208 25 C 0.004 3.996 26 C -0.021 4.021 27 C -0.128 4.128 28 C -0.185 4.185 29 C -0.194 4.194 30 N -0.134 5.134 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.159 0.841 36 H 0.250 0.750 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.200 0.800 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.129 0.871 49 H 0.120 0.880 50 H 0.131 0.869 51 H 0.125 0.875 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.737 -24.177 -8.131 32.873 hybrid contribution 1.457 2.156 0.687 2.691 sum -19.280 -22.022 -7.443 30.200 Atomic orbital electron populations 1.22033 0.93410 1.04291 1.02258 1.22340 0.96506 0.74670 1.06800 1.48958 1.33416 1.11259 1.19239 1.24302 0.91616 0.92524 0.95479 1.20050 1.12372 0.95778 1.04311 1.17382 0.78716 0.86446 0.78751 1.90724 1.66917 1.22565 1.67311 1.48397 1.45506 1.14184 1.26752 1.22716 1.01725 0.83320 0.95783 1.22753 0.96068 0.98434 0.97632 1.22482 0.96580 0.95544 0.96660 0.90796 1.20431 0.91821 0.87401 0.93356 0.93710 1.22272 1.00395 0.98983 0.99512 1.42672 1.55478 1.22754 1.16938 1.19563 1.21182 0.99026 0.96475 0.90575 1.25521 1.01290 1.01681 0.98764 1.69817 1.36570 1.33409 1.22543 0.85292 0.77293 0.79179 0.78522 1.20122 1.22640 1.20756 1.21954 0.90952 0.93449 0.93242 1.21499 0.93374 0.93757 0.93482 1.20437 1.08157 0.93047 0.91140 1.23041 0.91551 1.04254 0.99653 1.22995 0.98320 1.03741 0.94303 1.76988 1.24791 0.96794 1.14847 0.93277 0.87798 0.92734 0.88261 0.84126 0.75013 0.88674 0.88253 0.86504 0.88987 0.93983 0.89681 0.94963 0.79954 0.94345 0.92926 0.94739 0.87125 0.87969 0.86852 0.87471 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.09 71.98 0.73 -0.40 16 2 C 0.12 0.70 7.21 86.38 0.62 1.33 16 3 N -0.35 -5.69 3.65 -346.30 -1.26 -6.95 16 4 C 0.11 1.88 9.92 84.28 0.84 2.71 16 5 C -0.31 -8.47 6.10 -20.15 -0.12 -8.60 16 6 C 0.60 20.54 7.85 86.66 0.68 21.22 16 7 O -0.59 -26.32 15.25 -4.02 -0.06 -26.38 16 8 N -0.62 -17.96 3.33 -815.67 -2.71 -20.68 16 9 C 0.09 1.35 4.98 86.73 0.43 1.79 16 10 C -0.11 -1.84 5.29 31.79 0.17 -1.67 16 11 C -0.09 -2.72 2.65 -9.40 -0.02 -2.74 16 12 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 13 C 0.18 6.45 2.43 44.99 0.11 6.55 16 14 H 0.04 1.66 8.01 -2.39 -0.02 1.64 16 15 C -0.15 -4.67 9.27 71.98 0.67 -4.00 16 16 N -0.74 -36.84 4.97 -322.95 -1.61 -38.44 16 17 C -0.23 -12.82 9.93 84.03 0.83 -11.99 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 20 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 21 Si 0.97 47.45 29.55 68.60 2.03 49.47 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 C 0.13 4.55 6.23 86.86 0.54 5.09 16 26 C 0.15 4.12 6.79 43.51 0.30 4.41 16 27 C -0.11 -3.06 5.65 -11.54 -0.07 -3.12 16 28 C -0.15 -3.18 10.14 30.62 0.31 -2.87 16 29 C -0.16 -3.66 10.24 30.62 0.31 -3.34 16 30 N -0.31 -7.51 11.92 -46.68 -0.56 -8.06 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.14 -0.24 8.06 -2.39 -0.02 -0.26 16 36 H 0.23 1.62 4.43 -2.91 -0.01 1.61 16 37 H 0.10 1.01 6.85 -2.39 -0.02 1.00 16 38 H 0.10 0.99 7.01 -2.39 -0.02 0.97 16 39 H 0.12 1.24 8.11 -2.39 -0.02 1.22 16 40 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.82 7.28 -2.39 -0.02 1.80 16 43 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.37 20.33 7.80 -92.70 -0.72 19.60 16 45 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.05 2.02 7.98 -2.39 -0.02 2.00 16 47 H 0.03 1.55 8.04 -2.39 -0.02 1.53 16 48 H 0.11 3.75 6.73 -2.39 -0.02 3.73 16 49 H 0.10 2.12 7.90 -2.39 -0.02 2.11 16 50 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 52 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -84.68 417.11 3.10 -81.58 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.20 Total: 30.64 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 6.79 Total: 0.11 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -5.86 Total: -135.41 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -84.68 3.10 -81.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733530744.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.900 kcal (2) G-P(sol) polarization free energy of solvation -84.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds