Wall clock time and date at job start Wed Apr 1 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34259 * 125.75777 * 2 1 4 4 C 1.38036 * 107.41981 * 179.97438 * 3 2 1 5 5 C 1.47436 * 126.41452 * 179.97438 * 4 3 2 6 6 O 1.21605 * 119.99737 * 179.75412 * 5 4 3 7 7 N 1.34777 * 119.99981 * 0.02562 * 5 4 3 8 8 C 1.46496 * 119.99875 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.47457 * 325.00418 * 8 7 5 10 10 C 1.52994 * 109.47118 * 205.00093 * 8 7 5 11 11 N 1.46508 * 109.47242 * 55.00356 * 10 8 7 12 12 C 1.36932 * 120.00154 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00112 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99726 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99847 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00132 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47535 * 89.99827 * 16 14 12 18 18 H 1.48499 * 109.46988 * 209.99976 * 16 14 12 19 19 H 1.48497 * 109.47080 * 329.99537 * 16 14 12 20 20 C 1.52998 * 109.46875 * 85.00431 * 8 7 5 21 21 C 1.53001 * 117.50078 * 8.74654 * 20 8 7 22 22 C 1.53000 * 117.50229 * 300.08615 * 20 8 7 23 23 C 1.41293 * 107.17408 * 0.22864 * 4 3 2 24 24 C 1.50691 * 125.99311 * 179.75044 * 23 4 3 25 25 C 1.54267 * 110.03337 * 237.16730 * 24 23 4 26 26 C 1.54891 * 104.19560 * 217.10491 * 25 24 23 27 27 C 1.54889 * 102.74962 * 37.93994 * 26 25 24 28 28 C 1.53875 * 110.03462 * 119.99635 * 24 23 4 29 29 N 1.30451 * 108.01719 * 359.61256 * 23 4 3 30 30 H 1.09003 * 109.46556 * 90.00314 * 1 2 3 31 31 H 1.09004 * 109.46995 * 210.00197 * 1 2 3 32 32 H 1.08995 * 109.46808 * 330.00557 * 1 2 3 33 33 H 1.08001 * 126.28494 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99528 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.47506 * 175.00472 * 10 8 7 36 36 H 1.09001 * 109.47428 * 295.00535 * 10 8 7 37 37 H 0.97004 * 119.99562 * 0.02562 * 11 10 8 38 38 H 0.96995 * 120.00109 * 179.97438 * 15 14 12 39 39 H 1.09004 * 115.55080 * 154.41669 * 20 8 7 40 40 H 1.09001 * 117.49711 * 359.97438 * 21 20 8 41 41 H 1.09002 * 117.49997 * 145.02382 * 21 20 8 42 42 H 1.08997 * 117.50146 * 214.98314 * 22 20 8 43 43 H 1.09002 * 117.49253 * 359.97438 * 22 20 8 44 44 H 1.09003 * 110.01490 * 358.60604 * 24 23 4 45 45 H 1.09002 * 110.48694 * 335.77978 * 25 24 23 46 46 H 1.09000 * 110.48614 * 98.42947 * 25 24 23 47 47 H 1.09006 * 110.75565 * 279.62567 * 26 25 24 48 48 H 1.08992 * 110.76050 * 156.25726 * 26 25 24 49 49 H 1.09008 * 110.48713 * 203.38490 * 27 26 25 50 50 H 1.08997 * 110.59994 * 80.79199 * 27 26 25 51 51 H 1.08996 * 110.03390 * 238.57207 * 28 24 23 52 52 H 1.08999 * 110.02933 * 359.95458 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7639 1.5061 0.0003 6 8 5.8682 0.9969 0.0054 7 7 4.6406 2.8482 -0.0002 8 6 5.8370 3.6936 0.0001 9 1 6.6193 3.2160 0.5899 10 6 5.4988 5.0557 0.6092 11 7 4.9183 4.8647 1.9407 12 6 4.5356 5.9500 2.6829 13 1 4.6613 6.9467 2.2866 14 6 3.9851 5.7689 3.9443 15 7 3.6177 6.8120 4.6579 16 14 3.7670 4.0449 4.6295 17 1 4.9876 3.6516 5.3781 18 1 2.5965 4.0197 5.5429 19 1 3.5434 3.0927 3.5121 20 6 6.3266 3.8849 -1.4368 21 6 5.4238 3.3794 -2.5639 22 6 6.7153 2.6316 -2.2235 23 6 3.5311 -0.7574 -0.0044 24 6 4.7321 -1.6676 -0.0110 25 6 4.6753 -2.6086 -1.2321 26 6 5.2350 -3.9523 -0.7024 27 6 4.6549 -4.0225 0.7320 28 6 4.7192 -2.5665 1.2378 29 7 2.2827 -1.1357 0.0006 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.9166 2.1169 0.0004 34 1 3.7597 3.2543 0.0001 35 1 6.4071 5.6528 0.6911 36 1 4.7815 5.5713 -0.0293 37 1 4.8058 3.9695 2.2968 38 1 3.2326 6.6855 5.5391 39 1 6.9009 4.7929 -1.6208 40 1 4.4813 2.9101 -2.2817 41 1 5.4045 3.9545 -3.4896 42 1 7.5451 2.7151 -2.9253 43 1 6.6227 1.6707 -1.7171 44 1 5.6478 -1.0768 -0.0363 45 1 3.6469 -2.7312 -1.5718 46 1 5.3014 -2.2259 -2.0381 47 1 6.3246 -3.9342 -0.6780 48 1 4.8749 -4.7855 -1.3059 49 1 5.2660 -4.6716 1.3593 50 1 3.6233 -4.3741 0.7117 51 1 5.6289 -2.4126 1.8181 52 1 3.8445 -2.3438 1.8490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323063406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:43 Heat of formation + Delta-G solvation = 71.722606 kcal Electronic energy + Delta-G solvation = -31773.116322 eV Core-core repulsion = 27775.098329 eV Total energy + Delta-G solvation = -3998.017992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59495 -39.68673 -38.03887 -36.99383 -35.05249 -33.53032 -33.37501 -31.54780 -30.44199 -29.31012 -28.72782 -28.41692 -26.40043 -24.05882 -22.82095 -22.21333 -21.71332 -21.29183 -20.71364 -20.37394 -19.68940 -18.93994 -18.01558 -17.36261 -16.23900 -16.10916 -15.77598 -15.59453 -15.56373 -15.23719 -14.68243 -14.30064 -13.98854 -13.79843 -13.57619 -13.42477 -13.30337 -13.22595 -12.94065 -12.78744 -12.76917 -12.20711 -11.83909 -11.56217 -11.52837 -11.39857 -11.29231 -11.17532 -11.12783 -11.03635 -10.90066 -10.82953 -10.71157 -10.62331 -10.21940 -10.14683 -9.71185 -9.59787 -9.46186 -9.40518 -8.96652 -8.80842 -8.59501 -7.29372 -5.81826 -3.17697 1.44464 2.14144 2.21220 3.33152 3.38788 3.42149 3.44791 3.58615 4.05428 4.17225 4.45912 4.54780 4.58782 4.63318 4.68093 4.81619 4.84548 4.97416 5.11400 5.12118 5.16895 5.19480 5.33621 5.41141 5.42959 5.46866 5.48096 5.51178 5.59892 5.62207 5.68386 5.76049 5.80634 5.83331 5.86864 5.89394 5.93683 5.99123 6.11588 6.17705 6.25576 6.27083 6.37780 6.42268 6.48281 6.54401 6.62203 6.67262 6.88524 7.50910 7.81972 7.94267 8.36934 8.51510 9.16170 9.88411 10.08110 11.36376 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.003838 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.391487 B = 7293.996345 C = 8456.644161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.363 5.363 3 C 0.101 3.899 4 C -0.286 4.286 5 C 0.596 3.404 6 O -0.542 6.542 7 N -0.712 5.712 8 C 0.166 3.834 9 H 0.093 0.907 10 C 0.152 3.848 11 N -0.755 5.755 12 C -0.245 4.245 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.933 5.933 16 Si 0.882 3.118 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.278 1.278 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.186 4.186 23 C 0.144 3.856 24 C -0.026 4.026 25 C -0.112 4.112 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.113 4.113 29 N -0.299 5.299 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.400 0.600 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -17.664 -15.049 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.140 5.140 3 C -0.051 4.051 4 C -0.301 4.301 5 C 0.384 3.616 6 O -0.421 6.421 7 N -0.362 5.362 8 C 0.062 3.938 9 H 0.111 0.889 10 C 0.025 3.975 11 N -0.401 5.401 12 C -0.374 4.374 13 H 0.109 0.891 14 C -0.189 4.189 15 N -0.581 5.581 16 Si 0.712 3.288 17 H -0.210 1.210 18 H -0.218 1.218 19 H -0.204 1.204 20 C -0.180 4.180 21 C -0.214 4.214 22 C -0.222 4.222 23 C -0.024 4.024 24 C -0.046 4.046 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.159 4.159 28 C -0.151 4.151 29 N -0.119 5.119 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.200 0.800 34 H 0.235 0.765 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.231 -18.746 -14.955 24.197 hybrid contribution -0.438 0.087 0.687 0.819 sum -3.670 -18.659 -14.268 23.774 Atomic orbital electron populations 1.21985 0.73615 1.05058 1.03725 1.48285 1.07025 1.03844 1.54880 1.23157 0.90617 0.93885 0.97406 1.20295 0.92642 0.94115 1.23051 1.17209 0.87560 0.81579 0.75251 1.90612 1.26689 1.73553 1.51285 1.45884 1.10190 1.05393 1.74767 1.20790 0.87407 0.91786 0.93846 0.88948 1.20895 0.97396 0.92368 0.86853 1.42709 1.76184 1.05692 1.15547 1.19044 1.33661 0.87785 0.96945 0.89109 1.24646 1.00991 0.96410 0.96836 1.69698 1.48030 1.27984 1.12352 0.86600 0.77698 0.85573 0.78921 1.21011 1.21836 1.20387 1.22666 1.04043 0.98798 0.92462 1.22874 0.95428 1.04401 0.98716 1.23336 0.97734 0.98133 1.03033 1.22308 0.93021 0.92020 0.95037 1.20643 0.94204 0.94279 0.95501 1.22408 1.01418 0.94441 0.96752 1.22482 1.00383 0.97052 0.96130 1.22339 1.00876 0.96434 0.96245 1.22163 1.02208 0.94036 0.96730 1.77119 1.01337 1.06992 1.26481 0.90307 0.88967 0.88944 0.79996 0.76506 0.93925 0.94834 0.80382 0.93036 0.87197 0.89093 0.89595 0.89808 0.86423 0.86176 0.91375 0.91478 0.91338 0.91735 0.91858 0.91721 0.91321 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.44 59.85 0.68 1.35 16 2 N -0.36 -4.16 3.98 -67.60 -0.27 -4.43 16 3 C 0.10 1.21 10.99 -16.56 -0.18 1.02 16 4 C -0.29 -4.15 6.13 -105.07 -0.64 -4.79 16 5 C 0.60 9.37 6.64 -12.51 -0.08 9.29 16 6 O -0.54 -9.51 11.62 5.27 0.06 -9.45 16 7 N -0.71 -10.55 3.04 -54.89 -0.17 -10.72 16 8 C 0.17 2.60 2.59 -67.94 -0.18 2.43 16 9 H 0.09 1.63 7.57 -51.93 -0.39 1.23 16 10 C 0.15 2.76 5.80 -4.04 -0.02 2.74 16 11 N -0.76 -17.18 5.24 -59.91 -0.31 -17.50 16 12 C -0.24 -6.71 10.47 -15.06 -0.16 -6.87 16 13 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 14 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 15 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 16 Si 0.88 22.11 27.74 -169.99 -4.71 17.39 16 17 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 20 C -0.16 -2.14 5.70 -90.62 -0.52 -2.66 16 21 C -0.18 -2.18 9.74 -26.69 -0.26 -2.44 16 22 C -0.19 -2.46 9.83 -26.69 -0.26 -2.72 16 23 C 0.14 2.06 5.50 -82.02 -0.45 1.61 16 24 C -0.03 -0.34 3.28 -90.66 -0.30 -0.64 16 25 C -0.11 -1.24 6.35 -25.07 -0.16 -1.40 16 26 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 27 C -0.12 -1.20 6.83 -25.07 -0.17 -1.38 16 28 C -0.11 -1.37 6.45 -25.61 -0.17 -1.53 16 29 N -0.30 -4.10 12.25 33.89 0.42 -3.68 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.18 1.64 7.46 -52.49 -0.39 1.25 16 34 H 0.40 5.49 7.52 -40.82 -0.31 5.19 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.36 8.33 5.20 -40.82 -0.21 8.12 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 40 H 0.09 1.14 6.67 -51.93 -0.35 0.80 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.80 5.02 -51.93 -0.26 1.54 16 44 H 0.12 1.77 5.65 -51.93 -0.29 1.48 16 45 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 52 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 LS Contribution 409.47 15.07 6.17 6.17 Total: -1.00 -33.72 409.47 -9.68 -43.40 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -8.51 Total: 14.09 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -3.13 Total: -7.19 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: 0.44 Total: -64.41 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.06 Total: -9.45 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.72 -9.68 -43.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323063406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.122 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds