Wall clock time and date at job start Wed Apr 1 2020 05:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34259 * 125.75777 * 2 1 4 4 C 1.38036 * 107.41981 * 179.97438 * 3 2 1 5 5 C 1.47436 * 126.41452 * 179.97438 * 4 3 2 6 6 O 1.21605 * 119.99737 * 179.75412 * 5 4 3 7 7 N 1.34777 * 119.99981 * 0.02562 * 5 4 3 8 8 C 1.46496 * 119.99875 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.47457 * 325.00418 * 8 7 5 10 10 C 1.52994 * 109.47118 * 205.00093 * 8 7 5 11 11 N 1.46508 * 109.47242 * 55.00356 * 10 8 7 12 12 C 1.36932 * 120.00154 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00112 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99726 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99847 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00132 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47535 * 89.99827 * 16 14 12 18 18 H 1.48499 * 109.46988 * 209.99976 * 16 14 12 19 19 H 1.48497 * 109.47080 * 329.99537 * 16 14 12 20 20 C 1.52998 * 109.46875 * 85.00431 * 8 7 5 21 21 C 1.53001 * 117.50078 * 8.74654 * 20 8 7 22 22 C 1.53000 * 117.50229 * 300.08615 * 20 8 7 23 23 C 1.41293 * 107.17408 * 0.22864 * 4 3 2 24 24 C 1.50691 * 125.99311 * 179.75044 * 23 4 3 25 25 C 1.54267 * 110.03337 * 237.16730 * 24 23 4 26 26 C 1.54891 * 104.19560 * 217.10491 * 25 24 23 27 27 C 1.54889 * 102.74962 * 37.93994 * 26 25 24 28 28 C 1.53875 * 110.03462 * 119.99635 * 24 23 4 29 29 N 1.30451 * 108.01719 * 359.61256 * 23 4 3 30 30 H 1.09003 * 109.46556 * 90.00314 * 1 2 3 31 31 H 1.09004 * 109.46995 * 210.00197 * 1 2 3 32 32 H 1.08995 * 109.46808 * 330.00557 * 1 2 3 33 33 H 1.08001 * 126.28494 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99528 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.47506 * 175.00472 * 10 8 7 36 36 H 1.09001 * 109.47428 * 295.00535 * 10 8 7 37 37 H 0.97004 * 119.99562 * 0.02562 * 11 10 8 38 38 H 0.96995 * 120.00109 * 179.97438 * 15 14 12 39 39 H 1.09004 * 115.55080 * 154.41669 * 20 8 7 40 40 H 1.09001 * 117.49711 * 359.97438 * 21 20 8 41 41 H 1.09002 * 117.49997 * 145.02382 * 21 20 8 42 42 H 1.08997 * 117.50146 * 214.98314 * 22 20 8 43 43 H 1.09002 * 117.49253 * 359.97438 * 22 20 8 44 44 H 1.09003 * 110.01490 * 358.60604 * 24 23 4 45 45 H 1.09002 * 110.48694 * 335.77978 * 25 24 23 46 46 H 1.09000 * 110.48614 * 98.42947 * 25 24 23 47 47 H 1.09006 * 110.75565 * 279.62567 * 26 25 24 48 48 H 1.08992 * 110.76050 * 156.25726 * 26 25 24 49 49 H 1.09008 * 110.48713 * 203.38490 * 27 26 25 50 50 H 1.08997 * 110.59994 * 80.79199 * 27 26 25 51 51 H 1.08996 * 110.03390 * 238.57207 * 28 24 23 52 52 H 1.08999 * 110.02933 * 359.95458 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7639 1.5061 0.0003 6 8 5.8682 0.9969 0.0054 7 7 4.6406 2.8482 -0.0002 8 6 5.8370 3.6936 0.0001 9 1 6.6193 3.2160 0.5899 10 6 5.4988 5.0557 0.6092 11 7 4.9183 4.8647 1.9407 12 6 4.5356 5.9500 2.6829 13 1 4.6613 6.9467 2.2866 14 6 3.9851 5.7689 3.9443 15 7 3.6177 6.8120 4.6579 16 14 3.7670 4.0449 4.6295 17 1 4.9876 3.6516 5.3781 18 1 2.5965 4.0197 5.5429 19 1 3.5434 3.0927 3.5121 20 6 6.3266 3.8849 -1.4368 21 6 5.4238 3.3794 -2.5639 22 6 6.7153 2.6316 -2.2235 23 6 3.5311 -0.7574 -0.0044 24 6 4.7321 -1.6676 -0.0110 25 6 4.6753 -2.6086 -1.2321 26 6 5.2350 -3.9523 -0.7024 27 6 4.6549 -4.0225 0.7320 28 6 4.7192 -2.5665 1.2378 29 7 2.2827 -1.1357 0.0006 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.9166 2.1169 0.0004 34 1 3.7597 3.2543 0.0001 35 1 6.4071 5.6528 0.6911 36 1 4.7815 5.5713 -0.0293 37 1 4.8058 3.9695 2.2968 38 1 3.2326 6.6855 5.5391 39 1 6.9009 4.7929 -1.6208 40 1 4.4813 2.9101 -2.2817 41 1 5.4045 3.9545 -3.4896 42 1 7.5451 2.7151 -2.9253 43 1 6.6227 1.6707 -1.7171 44 1 5.6478 -1.0768 -0.0363 45 1 3.6469 -2.7312 -1.5718 46 1 5.3014 -2.2259 -2.0381 47 1 6.3246 -3.9342 -0.6780 48 1 4.8749 -4.7855 -1.3059 49 1 5.2660 -4.6716 1.3593 50 1 3.6233 -4.3741 0.7117 51 1 5.6289 -2.4126 1.8181 52 1 3.8445 -2.3438 1.8490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323063406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:42 Heat of formation + Delta-G solvation = 51.511697 kcal Electronic energy + Delta-G solvation = -31773.992733 eV Core-core repulsion = 27775.098329 eV Total energy + Delta-G solvation = -3998.894403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56529 -40.86321 -38.92792 -38.19354 -36.66306 -34.81922 -34.36133 -33.39798 -31.63566 -30.15773 -29.85189 -29.60744 -27.24275 -25.78419 -23.91586 -23.35439 -22.86981 -22.56765 -21.57505 -21.41000 -20.85708 -20.05411 -19.69580 -18.57610 -17.30459 -17.28157 -16.85153 -16.66596 -16.47588 -16.39589 -16.11216 -15.72604 -15.23678 -15.08186 -14.80818 -14.55658 -14.43501 -14.28044 -14.24327 -13.79703 -13.62105 -13.53265 -13.38092 -12.97953 -12.79995 -12.64940 -12.39152 -12.33911 -12.24794 -12.10743 -12.01450 -11.95118 -11.83820 -11.75783 -11.68551 -11.47298 -11.19655 -11.04477 -10.79944 -10.60752 -10.34109 -9.98478 -9.62022 -9.30876 -8.03504 -5.35852 0.48908 1.08870 1.32787 1.38119 1.42281 1.42631 2.26526 2.44829 2.45237 2.99369 3.28267 3.29575 3.50220 3.57657 3.77071 3.78804 3.86453 3.93577 4.08891 4.14046 4.18149 4.21928 4.38996 4.40504 4.47219 4.50325 4.51676 4.54278 4.62815 4.64383 4.66279 4.69313 4.81559 4.85518 4.88214 4.92698 4.98626 5.06264 5.10061 5.15535 5.16764 5.28193 5.30677 5.41253 5.42548 5.46102 5.54301 5.63423 5.77172 5.86758 6.20447 6.50591 6.68980 7.06815 7.34520 7.82691 8.01019 9.17968 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.003838 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.391487 B = 7293.996345 C = 8456.644161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.358 5.358 3 C 0.112 3.888 4 C -0.319 4.319 5 C 0.595 3.405 6 O -0.567 6.567 7 N -0.708 5.708 8 C 0.178 3.822 9 H 0.070 0.930 10 C 0.154 3.846 11 N -0.756 5.756 12 C -0.225 4.225 13 H 0.065 0.935 14 C -0.055 4.055 15 N -0.980 5.980 16 Si 0.944 3.056 17 H -0.291 1.291 18 H -0.294 1.294 19 H -0.256 1.256 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.189 4.189 23 C 0.131 3.869 24 C -0.029 4.029 25 C -0.107 4.107 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.113 4.113 29 N -0.316 5.316 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.213 0.787 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.364 0.636 38 H 0.257 0.743 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -19.077 -16.705 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.135 5.135 3 C -0.041 4.041 4 C -0.334 4.334 5 C 0.385 3.615 6 O -0.448 6.448 7 N -0.359 5.359 8 C 0.073 3.927 9 H 0.088 0.912 10 C 0.027 3.973 11 N -0.402 5.402 12 C -0.356 4.356 13 H 0.083 0.917 14 C -0.247 4.247 15 N -0.631 5.631 16 Si 0.773 3.227 17 H -0.218 1.218 18 H -0.221 1.221 19 H -0.180 1.180 20 C -0.184 4.184 21 C -0.200 4.200 22 C -0.226 4.226 23 C -0.036 4.036 24 C -0.049 4.049 25 C -0.145 4.145 26 C -0.154 4.154 27 C -0.153 4.153 28 C -0.151 4.151 29 N -0.137 5.137 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.229 0.771 34 H 0.243 0.757 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.197 0.803 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.239 -20.191 -16.663 26.520 hybrid contribution -0.145 0.596 1.132 1.288 sum -4.384 -19.595 -15.531 25.385 Atomic orbital electron populations 1.22403 0.70927 1.06445 1.05523 1.48692 1.08473 1.03117 1.53195 1.23561 0.89816 0.95171 0.95575 1.20333 0.93235 0.94179 1.25661 1.17404 0.87729 0.81704 0.74708 1.90605 1.27793 1.73975 1.52432 1.45791 1.10169 1.05142 1.74764 1.20522 0.87168 0.90066 0.94954 0.91201 1.21026 0.97268 0.94102 0.84868 1.42704 1.76173 1.04411 1.16888 1.19042 1.31651 0.88028 0.96923 0.91681 1.25314 1.01935 0.99896 0.97519 1.69851 1.50142 1.30287 1.12847 0.85577 0.76958 0.81598 0.78558 1.21778 1.22083 1.18035 1.22596 1.05062 0.99511 0.91218 1.22935 0.94735 1.03510 0.98774 1.23272 0.99110 0.96959 1.03223 1.22474 0.93523 0.92313 0.95260 1.20615 0.93137 0.94429 0.96764 1.22356 1.01126 0.95028 0.95991 1.22480 1.00693 0.96495 0.95780 1.22315 1.01270 0.94989 0.96766 1.22149 1.01201 0.95525 0.96221 1.77062 1.01329 1.08248 1.27057 0.88277 0.88541 0.86665 0.77067 0.75744 0.93857 0.93523 0.80316 0.93373 0.85843 0.89368 0.87579 0.88284 0.88623 0.88339 0.92006 0.91501 0.90745 0.90045 0.90414 0.91723 0.91699 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.44 127.77 1.46 2.38 16 2 N -0.36 -7.45 3.98 -367.78 -1.46 -8.91 16 3 C 0.11 2.44 10.99 84.27 0.93 3.37 16 4 C -0.32 -9.01 6.13 -20.15 -0.12 -9.13 16 5 C 0.60 18.51 6.64 86.67 0.58 19.08 16 6 O -0.57 -20.29 11.62 -4.05 -0.05 -20.34 16 7 N -0.71 -20.13 3.04 -445.82 -1.36 -21.48 16 8 C 0.18 5.39 2.59 44.99 0.12 5.50 16 9 H 0.07 2.46 7.57 -2.39 -0.02 2.44 16 10 C 0.15 5.37 5.80 86.38 0.50 5.87 16 11 N -0.76 -33.59 5.24 -343.44 -1.80 -35.39 16 12 C -0.23 -12.33 10.47 84.03 0.88 -11.45 16 13 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 14 C -0.05 -3.16 5.50 84.86 0.47 -2.69 16 15 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 16 Si 0.94 45.65 27.74 68.60 1.90 47.55 16 17 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 18 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.26 -11.25 6.52 99.48 0.65 -10.60 16 20 C -0.16 -4.11 5.70 -10.79 -0.06 -4.17 16 21 C -0.16 -3.61 9.74 30.62 0.30 -3.31 16 22 C -0.19 -4.75 9.83 30.62 0.30 -4.45 16 23 C 0.13 3.74 5.50 43.51 0.24 3.98 16 24 C -0.03 -0.77 3.28 -10.82 -0.04 -0.81 16 25 C -0.11 -2.33 6.35 31.67 0.20 -2.13 16 26 C -0.12 -2.03 6.91 31.89 0.22 -1.81 16 27 C -0.12 -2.17 6.83 31.67 0.22 -1.95 16 28 C -0.11 -2.74 6.45 31.32 0.20 -2.54 16 29 N -0.32 -8.37 12.25 -46.68 -0.57 -8.94 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.21 3.12 7.46 -2.91 -0.02 3.09 16 34 H 0.41 10.34 7.52 -92.71 -0.70 9.65 16 35 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.36 16.14 5.20 -92.70 -0.48 15.66 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.12 2.77 8.11 -2.39 -0.02 2.75 16 40 H 0.09 2.03 6.67 -2.39 -0.02 2.01 16 41 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.10 2.92 5.02 -2.39 -0.01 2.91 16 44 H 0.10 3.04 5.65 -2.39 -0.01 3.02 16 45 H 0.06 1.42 7.66 -2.39 -0.02 1.40 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.05 1.29 7.66 -2.39 -0.02 1.27 16 Total: -1.00 -73.89 409.47 3.05 -70.84 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: -0.30 Total: 42.16 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 6.39 Total: -4.25 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -4.89 Total: -135.97 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -73.89 3.05 -70.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323063406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.353 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds