Wall clock time and date at job start Wed Apr 1 2020 05:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34252 * 125.75711 * 2 1 4 4 C 1.38041 * 107.41860 * 179.97438 * 3 2 1 5 5 C 1.47427 * 126.41612 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99999 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00255 * 0.02562 * 5 4 3 8 8 C 1.46492 * 120.00186 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47284 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47594 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47025 * 186.09125 * 10 9 8 12 12 H 1.08999 * 109.87683 * 50.48328 * 11 10 9 13 13 C 1.54330 * 109.87913 * 171.65822 * 11 10 9 14 14 C 1.55149 * 102.94268 * 141.61079 * 13 11 10 15 15 C 1.54912 * 101.58398 * 324.49583 * 14 13 11 16 16 N 1.47016 * 109.88302 * 289.46194 * 11 10 9 17 17 C 1.36936 * 125.64808 * 61.61430 * 16 11 10 18 18 H 1.07996 * 119.99869 * 307.12536 * 17 16 11 19 19 C 1.38815 * 120.00370 * 127.12977 * 17 16 11 20 20 N 1.31617 * 120.00210 * 172.04532 * 19 17 16 21 21 Si 1.86796 * 119.99822 * 352.04290 * 19 17 16 22 22 H 1.48504 * 109.47076 * 93.98887 * 21 19 17 23 23 H 1.48501 * 109.47198 * 213.99288 * 21 19 17 24 24 H 1.48507 * 109.47347 * 333.99521 * 21 19 17 25 25 C 1.41290 * 107.17115 * 0.24366 * 4 3 2 26 26 C 1.50701 * 125.99123 * 179.73741 * 25 4 3 27 27 C 1.53003 * 117.49823 * 188.61811 * 26 25 4 28 28 C 1.52996 * 59.99947 * 252.51175 * 27 26 25 29 29 N 1.30453 * 108.02205 * 359.58904 * 25 4 3 30 30 H 1.08999 * 109.46703 * 89.99565 * 1 2 3 31 31 H 1.09001 * 109.47139 * 210.00278 * 1 2 3 32 32 H 1.08997 * 109.46665 * 330.00356 * 1 2 3 33 33 H 1.08005 * 126.29082 * 359.97438 * 3 2 1 34 34 H 0.97000 * 119.99584 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47661 * 60.00277 * 8 7 5 36 36 H 1.08999 * 109.47178 * 299.99883 * 8 7 5 37 37 H 1.09009 * 109.46937 * 300.00317 * 9 8 7 38 38 H 1.09002 * 109.47224 * 59.99767 * 9 8 7 39 39 H 1.09004 * 109.47022 * 306.09141 * 10 9 8 40 40 H 1.09005 * 109.46996 * 66.09008 * 10 9 8 41 41 H 1.09001 * 110.71626 * 259.97236 * 13 11 10 42 42 H 1.08999 * 110.72244 * 23.24556 * 13 11 10 43 43 H 1.09000 * 111.00700 * 206.42201 * 14 13 11 44 44 H 1.09003 * 111.03982 * 82.58388 * 14 13 11 45 45 H 1.08999 * 110.36447 * 278.17340 * 15 14 13 46 46 H 1.08996 * 110.36977 * 155.84947 * 15 14 13 47 47 H 0.96996 * 119.99936 * 179.97438 * 20 19 17 48 48 H 1.09005 * 115.54653 * 334.32560 * 26 25 4 49 49 H 1.08989 * 117.49918 * 0.02562 * 27 26 25 50 50 H 1.08998 * 117.49485 * 145.01661 * 27 26 25 51 51 H 1.09009 * 117.49900 * 252.51588 * 28 27 26 52 52 H 1.09000 * 117.52385 * 107.48513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5599 0.6551 0.0006 5 6 4.7639 1.5059 0.0003 6 8 5.8682 0.9967 0.0004 7 7 4.6407 2.8481 -0.0002 8 6 5.8371 3.6934 0.0001 9 6 5.4212 5.1658 0.0002 10 6 6.6707 6.0488 -0.0002 11 6 6.2595 7.5145 0.1529 12 1 5.5815 7.6227 0.9995 13 6 7.5117 8.3916 0.3636 14 6 7.1809 9.6706 -0.4500 15 6 6.3969 9.0822 -1.6495 16 7 5.6021 7.9804 -1.0768 17 6 4.4438 7.4745 -1.6034 18 1 4.3506 6.4137 -1.7834 19 6 3.3892 8.3250 -1.9061 20 7 2.3394 7.8668 -2.5543 21 14 3.4602 10.1198 -1.3932 22 1 4.0006 10.9332 -2.5120 23 1 2.0940 10.5917 -1.0528 24 1 4.3427 10.2613 -0.2072 25 6 3.5311 -0.7575 -0.0048 26 6 4.7321 -1.6677 -0.0118 27 6 4.4840 -3.1630 -0.2202 28 6 4.8886 -2.6397 1.1594 29 7 2.2826 -1.1357 0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3632 0.8900 0.5138 33 1 1.9167 2.1169 -0.0004 34 1 3.7598 3.2542 -0.0006 35 1 6.4308 3.4833 -0.8896 36 1 6.4300 3.4837 0.8904 37 1 4.8280 5.3759 -0.8899 38 1 4.8278 5.3758 0.8901 39 1 7.3171 5.7641 0.8301 40 1 7.2076 5.9183 -0.9399 41 1 7.6428 8.6293 1.4193 42 1 8.3988 7.8996 -0.0351 43 1 8.0917 10.1674 -0.7845 44 1 6.5568 10.3518 0.1284 45 1 7.0862 8.7009 -2.4029 46 1 5.7413 9.8381 -2.0818 47 1 1.6024 8.4610 -2.7654 48 1 5.6409 -1.2436 -0.4389 49 1 3.4523 -3.4883 -0.3527 50 1 5.2297 -3.7229 -0.7847 51 1 5.9006 -2.8553 1.5026 52 1 4.1232 -2.6205 1.9352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492154660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:42 Heat of formation + Delta-G solvation = 81.099923 kcal Electronic energy + Delta-G solvation = -30202.534284 eV Core-core repulsion = 26204.922923 eV Total energy + Delta-G solvation = -3997.611361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.55645 -38.97486 -38.04306 -37.21163 -35.14917 -33.20372 -32.63553 -32.52386 -30.51317 -29.92238 -28.31049 -27.41076 -24.97946 -24.19662 -23.17819 -22.52673 -22.24330 -21.32386 -20.32965 -20.01495 -19.32133 -19.23831 -17.71745 -16.92434 -16.19413 -16.12101 -15.87760 -15.46303 -15.33113 -15.09818 -14.72816 -14.48703 -14.09402 -13.81612 -13.39585 -13.19337 -13.03547 -12.96044 -12.73201 -12.56380 -12.37382 -12.01680 -11.99567 -11.89701 -11.62073 -11.32664 -11.19414 -11.15579 -10.90974 -10.89364 -10.79073 -10.58266 -10.45458 -10.28474 -9.98697 -9.94689 -9.86943 -9.52270 -9.35979 -9.32790 -8.88329 -8.57543 -8.55049 -6.49253 -6.00669 -3.69576 1.41948 2.02772 2.16738 3.29360 3.40860 3.49285 3.50248 3.55190 3.93002 4.15193 4.38288 4.47704 4.62641 4.83087 4.84612 4.95576 5.03516 5.05171 5.10887 5.15816 5.24285 5.34118 5.37975 5.48135 5.55670 5.56889 5.59111 5.63168 5.69983 5.75238 5.89207 6.04925 6.05020 6.12018 6.17058 6.17922 6.23303 6.34107 6.35516 6.39523 6.51151 6.53518 6.62715 6.67587 6.76301 6.83118 6.91497 7.04886 7.12470 7.44946 7.81973 8.06311 8.45012 8.51458 8.84543 9.60074 10.31964 11.07951 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.002378 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.752125 B =11770.577190 C =13409.425176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.362 5.362 3 C 0.102 3.898 4 C -0.281 4.281 5 C 0.592 3.408 6 O -0.548 6.548 7 N -0.723 5.723 8 C 0.123 3.877 9 C -0.141 4.141 10 C -0.112 4.112 11 C 0.155 3.845 12 H 0.040 0.960 13 C -0.126 4.126 14 C -0.139 4.139 15 C 0.119 3.881 16 N -0.602 5.602 17 C -0.254 4.254 18 H 0.086 0.914 19 C 0.043 3.957 20 N -0.906 5.906 21 Si 0.890 3.110 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.262 1.262 25 C 0.162 3.838 26 C -0.079 4.079 27 C -0.170 4.170 28 C -0.160 4.160 29 N -0.303 5.303 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.187 0.813 34 H 0.399 0.601 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.027 0.973 46 H 0.038 0.962 47 H 0.264 0.736 48 H 0.140 0.860 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.100 0.900 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 -13.594 7.514 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.139 5.139 3 C -0.049 4.049 4 C -0.296 4.296 5 C 0.379 3.621 6 O -0.427 6.427 7 N -0.374 5.374 8 C 0.000 4.000 9 C -0.179 4.179 10 C -0.152 4.152 11 C 0.049 3.951 12 H 0.057 0.943 13 C -0.164 4.164 14 C -0.177 4.177 15 C -0.005 4.005 16 N -0.329 5.329 17 C -0.382 4.382 18 H 0.103 0.897 19 C -0.159 4.159 20 N -0.546 5.546 21 Si 0.721 3.279 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.187 1.187 25 C -0.005 4.005 26 C -0.099 4.099 27 C -0.207 4.207 28 C -0.198 4.198 29 N -0.124 5.124 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.204 0.796 34 H 0.233 0.767 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.157 0.843 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.119 0.881 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.217 -14.921 7.405 16.659 hybrid contribution -0.274 2.195 0.112 2.215 sum -0.490 -12.727 7.517 14.789 Atomic orbital electron populations 1.22006 0.73412 1.04926 1.04039 1.48248 1.07067 1.03737 1.54883 1.23202 0.90402 0.93987 0.97319 1.20234 0.92731 0.93737 1.22853 1.17207 0.87521 0.81555 0.75800 1.90707 1.26856 1.73860 1.51285 1.45912 1.10545 1.05568 1.75356 1.21471 0.86660 0.90490 1.01381 1.22184 0.99667 0.90870 1.05135 1.21845 0.96363 0.96453 1.00554 1.21113 0.91945 0.91365 0.90651 0.94257 1.22579 0.98280 0.96413 0.99141 1.22793 0.99430 0.97150 0.98345 1.21855 0.93406 0.91367 0.93911 1.44570 1.25344 1.40038 1.22982 1.18610 0.87779 0.93999 1.37791 0.89672 1.25874 0.94650 0.98630 0.96702 1.69766 1.08025 1.36034 1.40769 0.86602 0.75973 0.85701 0.79661 1.21433 1.23081 1.18696 1.21404 0.91921 0.91805 0.95398 1.20516 0.95438 0.88945 1.04979 1.23001 1.03037 0.95141 0.99559 1.22943 1.02869 1.02340 0.91660 1.77090 1.01182 1.07266 1.26864 0.90104 0.89010 0.88857 0.79628 0.76701 0.91945 0.92409 0.87474 0.92263 0.93444 0.92215 0.92106 0.91713 0.92020 0.91870 0.95518 0.94391 0.92654 0.84272 0.88248 0.88339 0.88115 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.44 59.85 0.68 1.29 16 2 N -0.36 -3.94 3.98 -67.60 -0.27 -4.20 16 3 C 0.10 1.14 10.99 -16.57 -0.18 0.96 16 4 C -0.28 -3.95 6.13 -105.07 -0.64 -4.60 16 5 C 0.59 9.37 7.81 -12.52 -0.10 9.27 16 6 O -0.55 -10.13 15.00 5.27 0.08 -10.05 16 7 N -0.72 -10.47 5.54 -61.39 -0.34 -10.81 16 8 C 0.12 1.89 5.67 -4.05 -0.02 1.87 16 9 C -0.14 -2.34 4.86 -26.73 -0.13 -2.47 16 10 C -0.11 -1.87 4.69 -26.73 -0.13 -1.99 16 11 C 0.16 2.91 3.21 -66.95 -0.22 2.70 16 12 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 13 C -0.13 -2.00 6.47 -24.90 -0.16 -2.16 16 14 C -0.14 -2.37 7.08 -24.59 -0.17 -2.54 16 15 C 0.12 2.47 6.19 -2.53 -0.02 2.46 16 16 N -0.60 -13.55 2.38 -162.57 -0.39 -13.94 16 17 C -0.25 -6.56 9.35 -15.06 -0.14 -6.70 16 18 H 0.09 2.31 5.18 -52.49 -0.27 2.04 16 19 C 0.04 1.18 5.50 -17.43 -0.10 1.09 16 20 N -0.91 -26.07 13.97 55.49 0.78 -25.30 16 21 Si 0.89 21.74 25.12 -169.99 -4.27 17.47 16 22 H -0.29 -6.99 7.00 56.52 0.40 -6.60 16 23 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.26 -6.22 6.44 56.52 0.36 -5.86 16 25 C 0.16 2.29 6.79 -82.02 -0.56 1.73 16 26 C -0.08 -1.02 5.65 -91.77 -0.52 -1.53 16 27 C -0.17 -1.76 10.14 -26.73 -0.27 -2.03 16 28 C -0.16 -1.70 10.23 -26.73 -0.27 -1.97 16 29 N -0.30 -4.04 12.08 33.90 0.41 -3.63 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.19 1.47 7.46 -52.48 -0.39 1.08 16 34 H 0.40 5.04 7.40 -40.82 -0.30 4.74 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.11 2.13 4.50 -51.92 -0.23 1.89 16 38 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.94 7.85 -51.93 -0.41 0.54 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.12 7.54 -51.93 -0.39 0.73 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.85 4.62 -51.93 -0.24 0.61 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.14 1.97 6.73 -51.93 -0.35 1.62 16 49 H 0.10 1.06 7.90 -51.93 -0.41 0.65 16 50 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 52 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 410.41 15.07 6.18 6.18 Total: -1.00 -33.00 410.41 -9.27 -42.27 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.51 Total: 6.65 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.94 Total: -4.65 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.19 Total: -57.88 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.27 Total: 17.47 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.00 -9.27 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492154660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.373 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds