Wall clock time and date at job start Wed Apr 1 2020 05:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34252 * 125.75711 * 2 1 4 4 C 1.38041 * 107.41860 * 179.97438 * 3 2 1 5 5 C 1.47427 * 126.41612 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99999 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00255 * 0.02562 * 5 4 3 8 8 C 1.46492 * 120.00186 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47284 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47594 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47025 * 186.09125 * 10 9 8 12 12 H 1.08999 * 109.87683 * 50.48328 * 11 10 9 13 13 C 1.54330 * 109.87913 * 171.65822 * 11 10 9 14 14 C 1.55149 * 102.94268 * 141.61079 * 13 11 10 15 15 C 1.54912 * 101.58398 * 324.49583 * 14 13 11 16 16 N 1.47016 * 109.88302 * 289.46194 * 11 10 9 17 17 C 1.36936 * 125.64808 * 61.61430 * 16 11 10 18 18 H 1.07996 * 119.99869 * 307.12536 * 17 16 11 19 19 C 1.38815 * 120.00370 * 127.12977 * 17 16 11 20 20 N 1.31617 * 120.00210 * 172.04532 * 19 17 16 21 21 Si 1.86796 * 119.99822 * 352.04290 * 19 17 16 22 22 H 1.48504 * 109.47076 * 93.98887 * 21 19 17 23 23 H 1.48501 * 109.47198 * 213.99288 * 21 19 17 24 24 H 1.48507 * 109.47347 * 333.99521 * 21 19 17 25 25 C 1.41290 * 107.17115 * 0.24366 * 4 3 2 26 26 C 1.50701 * 125.99123 * 179.73741 * 25 4 3 27 27 C 1.53003 * 117.49823 * 188.61811 * 26 25 4 28 28 C 1.52996 * 59.99947 * 252.51175 * 27 26 25 29 29 N 1.30453 * 108.02205 * 359.58904 * 25 4 3 30 30 H 1.08999 * 109.46703 * 89.99565 * 1 2 3 31 31 H 1.09001 * 109.47139 * 210.00278 * 1 2 3 32 32 H 1.08997 * 109.46665 * 330.00356 * 1 2 3 33 33 H 1.08005 * 126.29082 * 359.97438 * 3 2 1 34 34 H 0.97000 * 119.99584 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47661 * 60.00277 * 8 7 5 36 36 H 1.08999 * 109.47178 * 299.99883 * 8 7 5 37 37 H 1.09009 * 109.46937 * 300.00317 * 9 8 7 38 38 H 1.09002 * 109.47224 * 59.99767 * 9 8 7 39 39 H 1.09004 * 109.47022 * 306.09141 * 10 9 8 40 40 H 1.09005 * 109.46996 * 66.09008 * 10 9 8 41 41 H 1.09001 * 110.71626 * 259.97236 * 13 11 10 42 42 H 1.08999 * 110.72244 * 23.24556 * 13 11 10 43 43 H 1.09000 * 111.00700 * 206.42201 * 14 13 11 44 44 H 1.09003 * 111.03982 * 82.58388 * 14 13 11 45 45 H 1.08999 * 110.36447 * 278.17340 * 15 14 13 46 46 H 1.08996 * 110.36977 * 155.84947 * 15 14 13 47 47 H 0.96996 * 119.99936 * 179.97438 * 20 19 17 48 48 H 1.09005 * 115.54653 * 334.32560 * 26 25 4 49 49 H 1.08989 * 117.49918 * 0.02562 * 27 26 25 50 50 H 1.08998 * 117.49485 * 145.01661 * 27 26 25 51 51 H 1.09009 * 117.49900 * 252.51588 * 28 27 26 52 52 H 1.09000 * 117.52385 * 107.48513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5599 0.6551 0.0006 5 6 4.7639 1.5059 0.0003 6 8 5.8682 0.9967 0.0004 7 7 4.6407 2.8481 -0.0002 8 6 5.8371 3.6934 0.0001 9 6 5.4212 5.1658 0.0002 10 6 6.6707 6.0488 -0.0002 11 6 6.2595 7.5145 0.1529 12 1 5.5815 7.6227 0.9995 13 6 7.5117 8.3916 0.3636 14 6 7.1809 9.6706 -0.4500 15 6 6.3969 9.0822 -1.6495 16 7 5.6021 7.9804 -1.0768 17 6 4.4438 7.4745 -1.6034 18 1 4.3506 6.4137 -1.7834 19 6 3.3892 8.3250 -1.9061 20 7 2.3394 7.8668 -2.5543 21 14 3.4602 10.1198 -1.3932 22 1 4.0006 10.9332 -2.5120 23 1 2.0940 10.5917 -1.0528 24 1 4.3427 10.2613 -0.2072 25 6 3.5311 -0.7575 -0.0048 26 6 4.7321 -1.6677 -0.0118 27 6 4.4840 -3.1630 -0.2202 28 6 4.8886 -2.6397 1.1594 29 7 2.2826 -1.1357 0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3632 0.8900 0.5138 33 1 1.9167 2.1169 -0.0004 34 1 3.7598 3.2542 -0.0006 35 1 6.4308 3.4833 -0.8896 36 1 6.4300 3.4837 0.8904 37 1 4.8280 5.3759 -0.8899 38 1 4.8278 5.3758 0.8901 39 1 7.3171 5.7641 0.8301 40 1 7.2076 5.9183 -0.9399 41 1 7.6428 8.6293 1.4193 42 1 8.3988 7.8996 -0.0351 43 1 8.0917 10.1674 -0.7845 44 1 6.5568 10.3518 0.1284 45 1 7.0862 8.7009 -2.4029 46 1 5.7413 9.8381 -2.0818 47 1 1.6024 8.4610 -2.7654 48 1 5.6409 -1.2436 -0.4389 49 1 3.4523 -3.4883 -0.3527 50 1 5.2297 -3.7229 -0.7847 51 1 5.9006 -2.8553 1.5026 52 1 4.1232 -2.6205 1.9352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492154660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:41 Heat of formation + Delta-G solvation = 60.670543 kcal Electronic energy + Delta-G solvation = -30203.420169 eV Core-core repulsion = 26204.922923 eV Total energy + Delta-G solvation = -3998.497246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.49944 -40.21983 -39.55443 -38.09188 -36.46944 -34.57675 -34.07237 -33.78811 -31.69076 -31.55308 -29.62423 -28.19239 -26.47677 -25.77179 -24.23535 -23.40683 -23.17420 -22.79327 -21.70504 -21.20069 -20.75650 -20.29275 -18.92886 -18.56908 -17.80752 -17.19803 -16.83453 -16.60484 -16.38986 -16.27533 -16.06191 -15.59939 -15.51852 -14.95773 -14.92361 -14.61870 -14.10716 -14.04795 -13.94642 -13.70020 -13.58022 -13.46106 -13.33413 -13.01711 -12.94072 -12.88737 -12.43140 -12.42549 -12.39071 -12.09137 -12.08451 -11.86513 -11.76417 -11.58847 -11.44927 -11.34315 -11.26861 -11.07643 -10.75614 -10.59440 -10.25811 -10.08266 -9.58643 -8.37982 -8.02178 -5.73858 0.48154 0.99220 1.33776 1.40467 1.41171 1.54409 2.32832 2.40982 2.46689 3.02337 3.15184 3.29105 3.47529 3.53253 3.87195 3.96129 3.98821 4.06598 4.13380 4.15068 4.22157 4.26224 4.28977 4.35353 4.39840 4.44818 4.53532 4.62711 4.67718 4.70692 4.73993 4.79312 4.85451 4.88481 4.92907 4.97280 5.03649 5.06698 5.18911 5.22332 5.24409 5.28296 5.33762 5.39554 5.46983 5.53607 5.60976 5.70489 5.85363 6.06646 6.46229 6.49045 6.67896 7.00704 7.31602 7.59816 8.38695 9.03939 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.002378 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.752125 B =11770.577190 C =13409.425176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.357 5.357 3 C 0.118 3.882 4 C -0.315 4.315 5 C 0.591 3.409 6 O -0.582 6.582 7 N -0.718 5.718 8 C 0.134 3.866 9 C -0.127 4.127 10 C -0.106 4.106 11 C 0.147 3.853 12 H 0.030 0.970 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.108 3.892 16 N -0.619 5.619 17 C -0.235 4.235 18 H 0.067 0.933 19 C -0.011 4.011 20 N -0.949 5.949 21 Si 0.942 3.058 22 H -0.289 1.289 23 H -0.311 1.311 24 H -0.250 1.250 25 C 0.147 3.853 26 C -0.105 4.105 27 C -0.154 4.154 28 C -0.150 4.150 29 N -0.320 5.320 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.218 0.782 34 H 0.408 0.592 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.030 0.970 46 H 0.018 0.982 47 H 0.261 0.739 48 H 0.120 0.880 49 H 0.097 0.903 50 H 0.116 0.884 51 H 0.114 0.886 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -13.166 9.210 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.134 5.134 3 C -0.035 4.035 4 C -0.330 4.330 5 C 0.380 3.620 6 O -0.464 6.464 7 N -0.369 5.369 8 C 0.010 3.990 9 C -0.165 4.165 10 C -0.146 4.146 11 C 0.042 3.958 12 H 0.048 0.952 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.016 4.016 16 N -0.346 5.346 17 C -0.365 4.365 18 H 0.084 0.916 19 C -0.208 4.208 20 N -0.593 5.593 21 Si 0.772 3.228 22 H -0.216 1.216 23 H -0.240 1.240 24 H -0.174 1.174 25 C -0.019 4.019 26 C -0.126 4.126 27 C -0.191 4.191 28 C -0.188 4.188 29 N -0.142 5.142 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.234 0.766 34 H 0.243 0.757 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.036 0.964 47 H 0.070 0.930 48 H 0.137 0.863 49 H 0.115 0.885 50 H 0.134 0.866 51 H 0.133 0.867 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.572 -14.493 9.121 17.134 hybrid contribution -0.532 1.995 -0.444 2.112 sum 0.039 -12.498 8.677 15.215 Atomic orbital electron populations 1.22432 0.70685 1.06793 1.05385 1.48668 1.08522 1.03012 1.53173 1.23610 0.89480 0.95297 0.95121 1.20223 0.93247 0.93786 1.25767 1.17481 0.87742 0.81779 0.75040 1.90677 1.28234 1.74439 1.53021 1.45840 1.10775 1.05280 1.75005 1.21284 0.86900 0.89754 1.01018 1.21961 0.99425 0.91702 1.03398 1.21773 0.96435 0.95161 1.01229 1.21321 0.93007 0.93063 0.88458 0.95244 1.22586 0.97078 0.94938 1.00785 1.22765 1.00028 0.97585 0.96509 1.21995 0.93336 0.90485 0.95792 1.44753 1.24842 1.40458 1.24590 1.18648 0.88679 0.93371 1.35785 0.91629 1.26444 0.94788 1.01883 0.97688 1.69877 1.09047 1.37081 1.43246 0.85771 0.75443 0.82045 0.79584 1.21630 1.23980 1.17360 1.21630 0.92532 0.92157 0.95576 1.20475 0.94748 0.90134 1.07201 1.23046 1.03399 0.93251 0.99395 1.23000 1.03595 1.00819 0.91425 1.77029 1.01087 1.08535 1.27529 0.88960 0.88151 0.86085 0.76570 0.75670 0.93344 0.91663 0.90944 0.91941 0.90381 0.93247 0.89402 0.89916 0.88747 0.92479 0.95187 0.96416 0.93013 0.86253 0.88499 0.86555 0.86732 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.44 127.77 1.46 2.34 16 2 N -0.36 -7.30 3.98 -367.77 -1.46 -8.76 16 3 C 0.12 2.51 10.99 84.28 0.93 3.44 16 4 C -0.32 -8.97 6.13 -20.15 -0.12 -9.10 16 5 C 0.59 19.11 7.81 86.66 0.68 19.79 16 6 O -0.58 -22.28 15.00 -4.05 -0.06 -22.34 16 7 N -0.72 -20.92 5.54 -466.38 -2.59 -23.51 16 8 C 0.13 4.10 5.67 86.38 0.49 4.59 16 9 C -0.13 -4.18 4.86 30.59 0.15 -4.03 16 10 C -0.11 -3.35 4.69 30.59 0.14 -3.20 16 11 C 0.15 5.19 3.21 45.34 0.15 5.33 16 12 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 13 C -0.12 -3.20 6.47 31.78 0.21 -2.99 16 14 C -0.13 -3.98 7.08 31.98 0.23 -3.76 16 15 C 0.11 4.31 6.19 86.86 0.54 4.85 16 16 N -0.62 -27.32 2.38 -668.26 -1.59 -28.91 16 17 C -0.24 -12.35 9.35 84.03 0.79 -11.56 16 18 H 0.07 3.69 5.18 -2.91 -0.02 3.68 16 19 C -0.01 -0.60 5.50 84.86 0.47 -0.13 16 20 N -0.95 -56.18 13.97 21.65 0.30 -55.88 16 21 Si 0.94 45.23 25.12 68.60 1.72 46.96 16 22 H -0.29 -13.79 7.00 99.48 0.70 -13.10 16 23 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 24 H -0.25 -11.29 6.44 99.48 0.64 -10.65 16 25 C 0.15 4.25 6.79 43.51 0.30 4.54 16 26 C -0.11 -2.80 5.65 -11.54 -0.07 -2.86 16 27 C -0.15 -3.12 10.14 30.59 0.31 -2.81 16 28 C -0.15 -3.15 10.23 30.59 0.31 -2.84 16 29 N -0.32 -8.43 12.08 -46.67 -0.56 -9.00 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.22 3.01 7.46 -2.91 -0.02 2.99 16 34 H 0.41 10.24 7.40 -92.71 -0.69 9.56 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 2.95 4.50 -2.38 -0.01 2.94 16 38 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 39 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.65 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.02 7.85 -2.39 -0.02 2.00 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 1.82 7.54 -2.39 -0.02 1.80 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.02 0.78 4.62 -2.39 -0.01 0.76 16 47 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.12 3.60 6.73 -2.38 -0.02 3.59 16 49 H 0.10 2.02 7.90 -2.39 -0.02 2.00 16 50 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 52 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.99 410.41 2.87 -71.12 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.17 Total: 28.72 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.95 Total: 1.59 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.90 Total: -126.05 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.72 Total: 46.96 kcal Total: -73.99 2.87 -71.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492154660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.793 kcal (2) G-P(sol) polarization free energy of solvation -73.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds