Wall clock time and date at job start Wed Apr 1 2020 04:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91347 * 2 1 4 4 C 1.54906 * 111.00528 * 236.09431 * 2 1 3 5 5 N 1.47418 * 104.83283 * 204.91476 * 4 2 1 6 6 C 1.36940 * 125.64924 * 204.09629 * 5 4 2 7 7 H 1.08006 * 119.99824 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99935 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00233 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47000 * 59.99946 * 10 8 6 12 12 H 1.48499 * 109.47031 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47242 * 299.99991 * 10 8 6 14 14 C 1.47018 * 108.70525 * 24.13491 * 5 4 2 15 15 C 1.54326 * 107.27149 * 358.93572 * 14 5 4 16 16 H 1.09002 * 110.71720 * 96.34700 * 15 14 5 17 17 N 1.46500 * 110.72028 * 219.44904 * 15 14 5 18 18 C 1.34777 * 119.99822 * 273.54452 * 17 15 14 19 19 O 1.21286 * 120.00112 * 359.97438 * 18 17 15 20 20 C 1.50698 * 119.99931 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.46812 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.46711 * 184.99830 * 21 20 18 23 23 C 1.53000 * 109.47233 * 300.00001 * 22 21 20 24 24 C 1.52996 * 109.47328 * 300.00469 * 23 22 21 25 25 C 1.53002 * 109.46891 * 299.99597 * 24 23 22 26 26 C 1.52997 * 109.46978 * 60.00410 * 25 24 23 27 27 C 1.52997 * 109.46817 * 180.02562 * 22 21 20 28 28 C 1.53002 * 109.47415 * 59.99902 * 26 25 24 29 29 C 1.52996 * 109.47024 * 65.00325 * 21 20 18 30 30 C 1.52993 * 109.47473 * 60.00001 * 24 23 22 31 31 H 1.09004 * 109.47371 * 296.09654 * 1 2 3 32 32 H 1.09001 * 109.47412 * 56.09783 * 1 2 3 33 33 H 1.09006 * 109.47303 * 176.09989 * 1 2 3 34 34 H 1.09004 * 110.35971 * 86.07830 * 4 2 1 35 35 H 1.09000 * 110.46171 * 323.80612 * 4 2 1 36 36 H 0.97001 * 120.00416 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.88308 * 239.52381 * 14 5 4 38 38 H 1.08998 * 109.88815 * 118.35439 * 14 5 4 39 39 H 0.97001 * 119.99996 * 93.54669 * 17 15 14 40 40 H 1.09000 * 109.47172 * 60.00175 * 20 18 17 41 41 H 1.08998 * 109.47020 * 299.99696 * 20 18 17 42 42 H 1.08996 * 109.47165 * 304.99954 * 21 20 18 43 43 H 1.09002 * 109.47070 * 60.00376 * 22 21 20 44 44 H 1.09004 * 109.46724 * 60.00652 * 23 22 21 45 45 H 1.09001 * 109.47194 * 179.97438 * 23 22 21 46 46 H 1.09004 * 109.47108 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.47142 * 300.00176 * 25 24 23 48 48 H 1.09002 * 109.47097 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.47140 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.47533 * 179.97438 * 27 22 21 51 51 H 1.08996 * 109.47853 * 300.00202 * 27 22 21 52 52 H 1.08996 * 109.47407 * 180.02562 * 28 26 25 53 53 H 1.08992 * 109.47063 * 59.99950 * 28 26 25 54 54 H 1.09001 * 109.46993 * 299.99936 * 29 21 20 55 55 H 1.09002 * 109.47722 * 180.02562 * 30 24 23 56 56 H 1.09004 * 109.46998 * 59.99561 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2430 -0.7732 6 6 4.4640 -1.5666 -1.6071 7 1 4.3333 -1.5117 -2.6778 8 6 5.6831 -1.9653 -1.0763 9 7 5.8425 -2.0318 0.2285 10 14 7.0973 -2.4074 -2.2137 11 1 7.4398 -1.2339 -3.0570 12 1 8.2801 -2.7969 -1.4046 13 1 6.6967 -3.5421 -3.0838 14 6 3.4674 -1.2742 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 1.4478 -1.6633 1.4240 17 7 2.2286 0.0496 2.3815 18 6 2.3022 -0.5004 3.6098 19 8 2.2499 -1.7053 3.7388 20 6 2.4482 0.3817 4.8229 21 6 2.5072 -0.4871 6.0810 22 6 2.5299 0.4105 7.3198 23 6 3.7601 1.3188 7.2691 24 6 5.0265 0.4610 7.2375 25 6 5.0856 -0.4077 8.4957 26 6 3.8555 -1.3160 8.5464 27 6 2.5895 -0.4582 8.5779 28 6 3.8328 -2.2136 7.3075 29 6 3.7737 -1.3449 6.0495 30 6 5.0039 -0.4365 5.9987 31 1 -0.3634 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0836 35 1 1.4524 -1.6704 -1.4042 36 1 6.6945 -2.3100 0.5995 37 1 4.2425 -0.5997 1.0600 38 1 3.6650 -2.2894 1.0401 39 1 2.2701 1.0132 2.2783 40 1 1.5940 1.0557 4.8869 41 1 3.3656 0.9645 4.7400 42 1 1.6308 -1.1342 6.1171 43 1 1.6276 1.0217 7.3423 44 1 3.7179 1.9377 6.3728 45 1 3.7760 1.9586 8.1515 46 1 5.9029 1.1081 7.2009 47 1 5.1017 0.2318 9.3783 48 1 5.9881 -1.0185 8.4734 49 1 3.8977 -1.9352 9.4425 50 1 2.6061 0.1812 9.4605 51 1 1.7134 -1.1056 8.6143 52 1 2.9562 -2.8604 7.3434 53 1 4.7350 -2.8247 7.2851 54 1 3.7576 -1.9843 5.1668 55 1 5.9059 -1.0480 5.9764 56 1 4.9618 0.1824 5.1024 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080979422.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:50 Heat of formation + Delta-G solvation = -66.464709 kcal Electronic energy + Delta-G solvation = -32845.975736 eV Core-core repulsion = 28945.505835 eV Total energy + Delta-G solvation = -3900.469901 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 346.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.57052 -40.73104 -39.07583 -35.61674 -34.74780 -34.22918 -33.46682 -33.40886 -32.18375 -30.37280 -28.92885 -27.36569 -26.70843 -25.87283 -24.95256 -22.65357 -22.32012 -22.25786 -21.65188 -21.49057 -20.63044 -18.90490 -18.17764 -17.82010 -17.30748 -16.93555 -16.45665 -16.00152 -15.68457 -15.49182 -15.24727 -15.14899 -14.90988 -14.69361 -14.49041 -14.17496 -14.13935 -14.05716 -13.85429 -13.73984 -13.35910 -13.33889 -13.20017 -13.09012 -12.92654 -12.86174 -12.61585 -12.57002 -12.26211 -12.00295 -11.87561 -11.86223 -11.73481 -11.67864 -11.65728 -11.60695 -11.51186 -11.44348 -10.85482 -10.75577 -10.45481 -10.41121 -10.25893 -9.90834 -8.94698 -7.86141 -5.24660 1.41591 1.46032 1.52332 1.78936 2.30226 2.48448 3.31581 3.55657 3.59178 3.64651 3.67257 3.75192 3.96661 4.05840 4.10946 4.19189 4.21373 4.25939 4.35811 4.37800 4.44748 4.46211 4.47947 4.51284 4.61003 4.62550 4.67865 4.70562 4.73203 4.81438 4.86792 4.89702 4.94783 4.99496 5.05690 5.06736 5.09019 5.18510 5.22658 5.23603 5.24893 5.27013 5.28467 5.31568 5.33605 5.37623 5.43173 5.49124 5.61073 5.63387 5.68219 5.72381 5.74820 5.82344 6.14643 6.71562 7.04619 7.44539 7.74218 8.38046 9.22384 Molecular weight = 346.24amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.003177 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.451199 B = 8811.989785 C =10393.120887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.131 3.869 5 N -0.629 5.629 6 C -0.245 4.245 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.980 3.020 11 H -0.270 1.270 12 H -0.298 1.298 13 H -0.277 1.277 14 C 0.193 3.807 15 C 0.138 3.862 16 H 0.067 0.933 17 N -0.707 5.707 18 C 0.503 3.497 19 O -0.582 6.582 20 C -0.130 4.130 21 C -0.052 4.052 22 C -0.076 4.076 23 C -0.107 4.107 24 C -0.083 4.083 25 C -0.105 4.105 26 C -0.083 4.083 27 C -0.104 4.104 28 C -0.107 4.107 29 C -0.087 4.087 30 C -0.110 4.110 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.023 0.977 36 H 0.243 0.757 37 H 0.015 0.985 38 H -0.016 1.016 39 H 0.412 0.588 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.058 0.942 52 H 0.051 0.949 53 H 0.045 0.955 54 H 0.041 0.959 55 H 0.039 0.961 56 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 12.112 17.676 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.111 0.889 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.374 4.374 7 H 0.106 0.894 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.808 3.192 11 H -0.196 1.196 12 H -0.224 1.224 13 H -0.203 1.203 14 C 0.066 3.934 15 C 0.031 3.969 16 H 0.085 0.915 17 N -0.358 5.358 18 C 0.292 3.708 19 O -0.462 6.462 20 C -0.169 4.169 21 C -0.070 4.070 22 C -0.094 4.094 23 C -0.144 4.144 24 C -0.102 4.102 25 C -0.142 4.142 26 C -0.102 4.102 27 C -0.141 4.141 28 C -0.144 4.144 29 C -0.105 4.105 30 C -0.147 4.147 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.033 0.967 38 H 0.002 0.998 39 H 0.249 0.751 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.100 0.900 51 H 0.077 0.923 52 H 0.070 0.930 53 H 0.064 0.936 54 H 0.059 0.941 55 H 0.058 0.942 56 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.786 11.196 17.766 23.168 hybrid contribution 1.490 -0.934 -1.073 2.060 sum -8.296 10.262 16.693 21.279 Atomic orbital electron populations 1.21646 0.91638 1.02136 1.03123 1.22523 0.97317 0.98840 0.92549 0.88935 1.21867 0.85251 0.95746 0.96553 1.44745 1.09484 1.79222 1.02075 1.19488 0.90207 1.37865 0.89830 0.89425 1.25734 1.00711 1.02292 0.97412 1.70252 1.24122 1.54524 1.11176 0.85131 0.78148 0.78456 0.77491 1.19585 1.22396 1.20286 1.21065 0.92878 0.96133 0.83328 1.21967 0.96045 0.93536 0.85334 0.91498 1.45842 1.74231 1.10550 1.05214 1.21505 0.74592 0.89183 0.85532 1.90665 1.51090 1.17584 1.86854 1.21910 1.05968 0.98428 0.90635 1.20780 0.97068 0.95848 0.93353 1.21098 0.99212 0.95982 0.93091 1.21600 0.92970 0.96946 1.02883 1.21051 0.98944 0.96329 0.93856 1.21526 0.97088 0.97844 0.97760 1.21049 0.95970 0.96414 0.96746 1.21514 0.96721 0.98081 0.97808 1.21503 1.00496 0.97420 0.95022 1.21066 0.95164 0.96749 0.97548 1.21560 0.96917 0.97886 0.98362 0.91111 0.90339 0.93283 0.92676 0.95937 0.94762 0.96677 0.99807 0.75104 0.85599 0.87624 0.92396 0.89078 0.91239 0.90015 0.90958 0.90165 0.93112 0.90702 0.89961 0.92282 0.93036 0.93597 0.94101 0.94245 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.31 71.98 0.67 -2.32 16 2 C -0.09 -2.95 3.25 -9.40 -0.03 -2.98 16 3 H 0.09 2.70 8.00 -2.38 -0.02 2.68 16 4 C 0.13 5.32 6.70 86.86 0.58 5.90 16 5 N -0.63 -33.69 3.39 -692.01 -2.35 -36.04 16 6 C -0.25 -14.23 10.28 84.03 0.86 -13.37 16 7 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 8 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 9 N -0.95 -61.04 10.31 21.65 0.22 -60.82 16 10 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 C 0.19 10.29 5.12 86.73 0.44 10.74 16 15 C 0.14 5.42 2.70 46.18 0.12 5.55 16 16 H 0.07 2.89 7.60 -2.39 -0.02 2.87 16 17 N -0.71 -22.41 5.13 -436.89 -2.24 -24.65 16 18 C 0.50 16.80 7.54 87.66 0.66 17.46 16 19 O -0.58 -25.44 13.69 -3.05 -0.04 -25.48 16 20 C -0.13 -2.92 4.47 29.85 0.13 -2.78 16 21 C -0.05 -1.22 1.58 -10.79 -0.02 -1.23 16 22 C -0.08 -1.22 2.72 -10.79 -0.03 -1.25 16 23 C -0.11 -1.60 4.92 30.59 0.15 -1.44 16 24 C -0.08 -1.61 3.19 -10.80 -0.03 -1.64 16 25 C -0.10 -1.85 5.19 30.59 0.16 -1.69 16 26 C -0.08 -1.56 3.19 -10.81 -0.03 -1.60 16 27 C -0.10 -1.62 5.19 30.58 0.16 -1.46 16 28 C -0.11 -2.76 5.19 30.60 0.16 -2.60 16 29 C -0.09 -2.55 2.46 -10.79 -0.03 -2.57 16 30 C -0.11 -2.98 4.92 30.59 0.15 -2.83 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.23 8.08 -2.38 -0.02 1.21 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 36 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.02 0.89 7.27 -2.39 -0.02 0.87 16 38 H -0.02 -1.06 7.51 -2.39 -0.02 -1.08 16 39 H 0.41 9.90 8.52 -92.71 -0.79 9.11 16 40 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.11 2.23 4.83 -2.39 -0.01 2.21 16 42 H 0.06 1.57 7.95 -2.39 -0.02 1.55 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 0.98 6.54 -2.39 -0.02 0.97 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.04 1.64 5.95 -2.39 -0.01 1.62 16 55 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 56 H 0.05 1.44 6.32 -2.39 -0.02 1.43 16 Total: -1.00 -78.59 401.65 2.23 -76.36 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.06 Total: 24.87 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 4.55 Total: -3.76 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.37 Total: -121.52 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.04 Total: -25.48 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -78.59 2.23 -76.36 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080979422.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.895 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds