Wall clock time and date at job start Wed Apr 1 2020 04:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 C 1.38244 * 119.98852 * 269.72488 * 5 4 3 7 7 C 1.38211 * 120.01024 * 179.76743 * 6 5 4 8 8 C 1.38329 * 119.99213 * 0.50866 * 7 6 5 9 9 Br 1.89097 * 120.01495 * 179.72599 * 8 7 6 10 10 C 1.38331 * 119.97598 * 359.73961 * 8 7 6 11 11 C 1.38219 * 119.98979 * 0.02562 * 10 8 7 12 12 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 13 13 O 1.42095 * 106.40469 * 23.26116 * 12 3 2 14 14 O 1.42098 * 106.40441 * 156.18457 * 12 3 2 15 15 C 1.76207 * 107.21624 * 269.72430 * 12 3 2 16 16 H 1.07993 * 119.99959 * 359.97438 * 15 12 3 17 17 C 1.37872 * 119.99750 * 180.02562 * 15 12 3 18 18 N 1.31513 * 119.99801 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 120.00358 * 359.97438 * 17 15 12 20 20 H 1.48497 * 109.47473 * 90.00302 * 19 17 15 21 21 H 1.48498 * 109.47332 * 210.00262 * 19 17 15 22 22 H 1.48500 * 109.47176 * 330.00096 * 19 17 15 23 23 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 24 24 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 26 26 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 27 27 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 28 28 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 29 29 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 30 30 H 1.07997 * 119.99329 * 0.02562 * 6 5 4 31 31 H 1.08004 * 120.01018 * 180.22921 * 7 6 5 32 32 H 1.08001 * 120.00710 * 179.97438 * 10 8 7 33 33 H 1.08001 * 119.99248 * 179.97438 * 11 10 8 34 34 H 0.97010 * 120.00359 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 6 3.6150 0.7237 2.7554 7 6 4.8416 0.4270 3.3191 8 6 5.9468 1.2024 3.0178 9 35 7.6236 0.8017 3.7947 10 6 5.8249 2.2712 2.1482 11 6 4.5989 2.5642 1.5812 12 16 2.4057 2.1224 -1.4293 13 8 1.6809 1.4412 -2.4440 14 8 2.2940 3.5203 -1.1995 15 6 4.1112 1.8034 -1.7368 16 1 4.6854 1.2153 -1.0363 17 6 4.7128 2.3056 -2.8711 18 7 5.9858 2.0680 -3.1004 19 14 3.7198 3.3235 -4.0824 20 1 3.7997 4.7578 -3.7061 21 1 4.2682 3.1394 -5.4501 22 1 2.3021 2.8826 -4.0541 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0923 3.1802 1.0756 29 1 1.3617 1.8097 1.9453 30 1 2.7513 0.1208 2.9937 31 1 4.9363 -0.4074 3.9982 32 1 6.6874 2.8772 1.9129 33 1 4.5036 3.3990 0.9025 34 1 6.4090 2.4209 -3.8987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963997.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:06 Heat of formation + Delta-G solvation = -53.449706 kcal Electronic energy + Delta-G solvation = -21016.566779 eV Core-core repulsion = 17701.502547 eV Total energy + Delta-G solvation = -3315.064232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 346.998 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.24523 -36.25748 -35.77073 -34.47417 -33.04077 -32.56082 -30.86384 -30.50668 -28.73864 -26.40741 -25.24995 -22.80034 -22.13799 -20.93952 -18.71469 -17.42381 -16.84687 -16.38146 -15.74976 -15.33172 -15.02168 -14.92503 -13.97143 -13.56726 -13.49551 -13.29365 -13.23865 -12.96624 -12.82540 -12.41529 -12.13345 -11.89912 -11.40770 -11.24223 -11.16627 -10.94409 -10.89209 -10.67073 -10.63773 -10.56039 -10.38206 -10.17318 -9.82509 -9.22350 -9.17697 -8.77601 -8.47791 -8.33014 -6.80436 -5.33894 1.22900 1.55244 1.75773 1.99941 3.05025 3.14810 3.24489 3.77139 3.93355 4.20973 4.58058 4.89622 5.02760 5.08771 5.27030 5.34145 5.35299 5.53888 5.61468 5.66371 5.77810 5.83790 5.89375 6.00231 6.07662 6.15511 6.23845 6.36328 6.48611 6.52317 6.57518 6.81695 7.04309 7.30963 7.47967 8.24484 8.70529 10.31461 Molecular weight = 347.00amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.004448 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.610586 B = 6293.909820 C = 7640.578382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.995 5.995 4 C 0.158 3.842 5 C -0.087 4.087 6 C -0.103 4.103 7 C -0.100 4.100 8 C -0.089 4.089 9 Br -0.066 7.066 10 C -0.086 4.086 11 C -0.081 4.081 12 S 2.669 3.331 13 O -1.004 7.004 14 O -1.010 7.010 15 C -1.010 5.010 16 H 0.123 0.877 17 C 0.155 3.845 18 N -0.820 5.820 19 Si 0.796 3.204 20 H -0.247 1.247 21 H -0.255 1.255 22 H -0.221 1.221 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 -3.306 14.530 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.001 4.001 3 N -0.829 5.829 4 C 0.032 3.968 5 C -0.089 4.089 6 C -0.122 4.122 7 C -0.120 4.120 8 C -0.168 4.168 9 Br 0.019 6.981 10 C -0.105 4.105 11 C -0.101 4.101 12 S 2.772 3.228 13 O -0.995 6.995 14 O -1.000 7.000 15 C -1.145 5.145 16 H 0.141 0.859 17 C -0.064 4.064 18 N -0.449 5.449 19 Si 0.616 3.384 20 H -0.170 1.170 21 H -0.179 1.179 22 H -0.143 1.143 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.310 -2.970 14.200 14.567 hybrid contribution 0.248 0.110 -0.694 0.745 sum -1.062 -2.861 13.507 13.847 Atomic orbital electron populations 1.22232 0.96749 1.01752 1.02348 1.21087 0.93674 0.82398 1.02989 1.57582 1.81240 1.22839 1.21237 1.20166 0.92704 0.98158 0.85789 1.20554 0.96950 0.95321 0.96086 1.20973 0.96992 0.97017 0.97240 1.20969 0.91680 0.99013 1.00332 1.21721 0.91390 1.00742 1.02987 1.96644 1.24855 1.94530 1.82056 1.21116 0.98505 0.95867 0.95050 1.21319 0.91398 0.99995 0.97343 1.01632 0.77361 0.72825 0.70938 1.93459 1.75388 1.75304 1.55322 1.93385 1.89400 1.32620 1.84643 1.30480 1.18653 1.47729 1.17634 0.85872 1.24391 0.94513 0.91896 0.95613 1.69996 1.10297 1.38432 1.26148 0.87954 0.84209 0.83223 0.83021 1.17038 1.17910 1.14304 0.91846 0.92015 0.92824 0.89770 0.91324 0.88001 0.89968 0.85470 0.85500 0.85054 0.84072 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.12 1.95 6.06 -4.04 -0.02 1.93 16 3 N -1.00 -18.41 2.77 -115.66 -0.32 -18.73 16 4 C 0.16 2.44 5.81 -5.19 -0.03 2.41 16 5 C -0.09 -1.34 5.46 -104.62 -0.57 -1.91 16 6 C -0.10 -1.36 9.37 -39.59 -0.37 -1.73 16 7 C -0.10 -1.33 9.79 -39.56 -0.39 -1.72 16 8 C -0.09 -1.31 6.22 -39.51 -0.25 -1.55 16 9 Br -0.07 -0.86 33.70 -68.01 -2.29 -3.16 16 10 C -0.09 -1.37 9.79 -39.55 -0.39 -1.76 16 11 C -0.08 -1.38 9.70 -39.59 -0.38 -1.77 16 12 S 2.67 64.81 4.15 -107.50 -0.45 64.36 16 13 O -1.00 -26.32 14.99 -57.17 -0.86 -27.18 16 14 O -1.01 -25.72 15.38 -57.17 -0.88 -26.60 16 15 C -1.01 -27.22 10.29 30.60 0.31 -26.90 16 16 H 0.12 3.41 8.06 -52.49 -0.42 2.98 16 17 C 0.16 4.36 5.47 -17.82 -0.10 4.26 16 18 N -0.82 -23.18 13.96 55.43 0.77 -22.41 16 19 Si 0.80 20.23 26.54 -169.99 -4.51 15.72 16 20 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.26 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.22 -5.74 5.61 56.52 0.32 -5.43 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.44 7.61 -51.93 -0.40 1.05 16 27 H 0.07 0.88 7.64 -51.93 -0.40 0.48 16 28 H 0.10 1.64 6.85 -51.93 -0.36 1.28 16 29 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 30 H 0.13 1.33 7.91 -52.49 -0.42 0.91 16 31 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.14 2.56 8.06 -52.49 -0.42 2.14 16 34 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -31.05 322.53 -9.64 -40.68 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.16 Total: 3.13 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: -1.80 Total: -30.69 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.45 Total: -41.14 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -1.74 Total: -53.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.51 Total: 15.72 kcal Atomic # 16 Polarization: 64.81 SS G_CDS: -0.45 Total: 64.36 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.16 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.05 -9.64 -40.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963997.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.766 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds