Wall clock time and date at job start Wed Apr 1 2020 04:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 C 1.38244 * 119.98852 * 269.72488 * 5 4 3 7 7 C 1.38211 * 120.01024 * 179.76743 * 6 5 4 8 8 C 1.38329 * 119.99213 * 0.50866 * 7 6 5 9 9 Br 1.89097 * 120.01495 * 179.72599 * 8 7 6 10 10 C 1.38331 * 119.97598 * 359.73961 * 8 7 6 11 11 C 1.38219 * 119.98979 * 0.02562 * 10 8 7 12 12 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 13 13 O 1.42095 * 106.40469 * 23.26116 * 12 3 2 14 14 O 1.42098 * 106.40441 * 156.18457 * 12 3 2 15 15 C 1.76207 * 107.21624 * 269.72430 * 12 3 2 16 16 H 1.07993 * 119.99959 * 359.97438 * 15 12 3 17 17 C 1.37872 * 119.99750 * 180.02562 * 15 12 3 18 18 N 1.31513 * 119.99801 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 120.00358 * 359.97438 * 17 15 12 20 20 H 1.48497 * 109.47473 * 90.00302 * 19 17 15 21 21 H 1.48498 * 109.47332 * 210.00262 * 19 17 15 22 22 H 1.48500 * 109.47176 * 330.00096 * 19 17 15 23 23 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 24 24 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 26 26 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 27 27 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 28 28 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 29 29 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 30 30 H 1.07997 * 119.99329 * 0.02562 * 6 5 4 31 31 H 1.08004 * 120.01018 * 180.22921 * 7 6 5 32 32 H 1.08001 * 120.00710 * 179.97438 * 10 8 7 33 33 H 1.08001 * 119.99248 * 179.97438 * 11 10 8 34 34 H 0.97010 * 120.00359 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 6 3.6150 0.7237 2.7554 7 6 4.8416 0.4270 3.3191 8 6 5.9468 1.2024 3.0178 9 35 7.6236 0.8017 3.7947 10 6 5.8249 2.2712 2.1482 11 6 4.5989 2.5642 1.5812 12 16 2.4057 2.1224 -1.4293 13 8 1.6809 1.4412 -2.4440 14 8 2.2940 3.5203 -1.1995 15 6 4.1112 1.8034 -1.7368 16 1 4.6854 1.2153 -1.0363 17 6 4.7128 2.3056 -2.8711 18 7 5.9858 2.0680 -3.1004 19 14 3.7198 3.3235 -4.0824 20 1 3.7997 4.7578 -3.7061 21 1 4.2682 3.1394 -5.4501 22 1 2.3021 2.8826 -4.0541 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0923 3.1802 1.0756 29 1 1.3617 1.8097 1.9453 30 1 2.7513 0.1208 2.9937 31 1 4.9363 -0.4074 3.9982 32 1 6.6874 2.8772 1.9129 33 1 4.5036 3.3990 0.9025 34 1 6.4090 2.4209 -3.8987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963997.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:05 Heat of formation + Delta-G solvation = -73.675292 kcal Electronic energy + Delta-G solvation = -21017.443826 eV Core-core repulsion = 17701.502547 eV Total energy + Delta-G solvation = -3315.941280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 346.998 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40163 -37.76830 -37.54644 -36.47403 -35.15393 -33.72514 -31.99231 -31.65774 -29.94170 -28.51456 -26.47372 -23.98935 -23.33610 -22.18379 -20.62064 -19.21857 -18.66865 -17.59311 -17.29486 -17.05197 -16.23028 -16.21014 -15.70558 -15.41184 -15.02973 -14.75863 -14.54017 -14.38775 -14.18058 -13.72568 -13.54534 -13.40688 -13.02847 -12.97017 -12.71108 -12.55941 -12.46541 -12.30508 -12.03774 -11.84010 -11.78488 -11.55313 -11.32699 -11.24911 -11.12916 -9.94324 -9.87992 -9.55299 -8.93676 -7.46774 -0.04434 0.26992 0.40949 0.64425 1.02489 1.11078 1.18651 1.87490 2.38564 2.45097 2.77964 3.38719 3.78246 3.86710 4.00095 4.02087 4.03763 4.33123 4.44186 4.48747 4.52369 4.69202 4.72899 4.81673 4.87333 5.01767 5.07213 5.24774 5.29029 5.30957 5.43191 5.46341 5.62476 5.87879 5.94294 6.08450 6.57864 8.23456 Molecular weight = 347.00amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.004448 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.610586 B = 6293.909820 C = 7640.578382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.989 5.989 4 C 0.152 3.848 5 C -0.097 4.097 6 C -0.090 4.090 7 C -0.096 4.096 8 C -0.099 4.099 9 Br -0.053 7.053 10 C -0.105 4.105 11 C -0.108 4.108 12 S 2.686 3.314 13 O -1.027 7.027 14 O -1.028 7.028 15 C -1.023 5.023 16 H 0.105 0.895 17 C 0.114 3.886 18 N -0.851 5.851 19 Si 0.815 3.185 20 H -0.240 1.240 21 H -0.223 1.223 22 H -0.231 1.231 23 H 0.033 0.967 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -4.825 16.446 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.826 5.826 4 C 0.027 3.973 5 C -0.099 4.099 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.178 4.178 9 Br 0.032 6.968 10 C -0.125 4.125 11 C -0.128 4.128 12 S 2.787 3.213 13 O -1.017 7.017 14 O -1.018 7.018 15 C -1.156 5.156 16 H 0.123 0.877 17 C -0.103 4.103 18 N -0.482 5.482 19 Si 0.633 3.367 20 H -0.164 1.164 21 H -0.145 1.145 22 H -0.154 1.154 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.151 0.849 30 H 0.187 0.813 31 H 0.175 0.825 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.794 -4.485 16.095 16.940 hybrid contribution 0.753 0.515 -1.142 1.461 sum -2.041 -3.970 14.953 15.605 Atomic orbital electron populations 1.22225 0.94777 1.03584 1.02175 1.21439 0.95348 0.80568 1.03834 1.57216 1.80803 1.24182 1.20445 1.20477 0.94409 0.97368 0.85015 1.20621 0.96198 0.96099 0.97019 1.21375 0.98328 0.95873 0.95371 1.21388 0.91056 0.99089 1.00009 1.21923 0.92751 1.00459 1.02674 1.96648 1.24226 1.94293 1.81586 1.21139 0.98140 0.96988 0.96200 1.21260 0.92935 1.00419 0.98141 1.00917 0.75790 0.72508 0.72102 1.93421 1.75004 1.75710 1.57584 1.93352 1.89150 1.33918 1.85397 1.30949 1.20797 1.46871 1.16953 0.87682 1.25058 0.95324 0.92828 0.97091 1.70026 1.11174 1.39724 1.27259 0.87637 0.82921 0.82597 0.83552 1.16367 1.14511 1.15356 0.94732 0.89211 0.90284 0.92054 0.87393 0.89402 0.84931 0.81321 0.82488 0.85631 0.86834 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.11 3.22 6.06 86.38 0.52 3.74 16 3 N -0.99 -35.11 2.77 -519.85 -1.44 -36.54 16 4 C 0.15 4.35 5.81 85.63 0.50 4.85 16 5 C -0.10 -2.84 5.46 -19.86 -0.11 -2.95 16 6 C -0.09 -2.03 9.37 22.26 0.21 -1.82 16 7 C -0.10 -2.23 9.79 22.28 0.22 -2.01 16 8 C -0.10 -2.77 6.22 22.31 0.14 -2.64 16 9 Br -0.05 -1.31 33.70 -20.37 -0.69 -2.00 16 10 C -0.10 -3.44 9.79 22.29 0.22 -3.22 16 11 C -0.11 -3.78 9.70 22.27 0.22 -3.56 16 12 S 2.69 131.41 4.15 -56.49 -0.23 131.17 16 13 O -1.03 -54.23 14.99 -128.00 -1.92 -56.15 16 14 O -1.03 -53.12 15.38 -128.00 -1.97 -55.09 16 15 C -1.02 -56.66 10.29 67.73 0.70 -55.97 16 16 H 0.11 6.04 8.06 -2.91 -0.02 6.02 16 17 C 0.11 6.50 5.47 84.65 0.46 6.97 16 18 N -0.85 -49.27 13.96 21.45 0.30 -48.97 16 19 Si 0.82 41.19 26.54 68.60 1.82 43.01 16 20 H -0.24 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.22 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.23 -12.03 5.61 99.48 0.56 -11.47 16 23 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.06 2.03 7.61 -2.39 -0.02 2.02 16 27 H 0.11 2.24 7.64 -2.39 -0.02 2.22 16 28 H 0.09 2.78 6.85 -2.39 -0.02 2.76 16 29 H 0.13 2.48 8.05 -2.39 -0.02 2.46 16 30 H 0.17 2.39 7.91 -2.91 -0.02 2.37 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 33 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 34 H 0.29 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -69.50 322.53 0.64 -68.87 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.95 Total: 15.57 kcal Atomic # 6 Polarization: -63.68 SS G_CDS: 3.81 Total: -59.87 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.14 Total: -85.51 kcal Atomic # 8 Polarization: -107.35 SS G_CDS: -3.89 Total: -111.24 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.82 Total: 43.01 kcal Atomic # 16 Polarization: 131.41 SS G_CDS: -0.23 Total: 131.17 kcal Atomic # 35 Polarization: -1.31 SS G_CDS: -0.69 Total: -2.00 kcal Total: -69.50 0.64 -68.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963997.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.810 kcal (2) G-P(sol) polarization free energy of solvation -69.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds