Wall clock time and date at job start Wed Apr 1 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47387 * 17.31120 * 3 2 1 5 5 C 1.37105 * 119.99983 * 271.05174 * 4 3 2 6 6 H 1.07998 * 120.00142 * 188.43337 * 5 4 3 7 7 C 1.38953 * 120.00015 * 8.43254 * 5 4 3 8 8 N 1.31407 * 120.00058 * 24.40505 * 7 5 4 9 9 Si 1.86802 * 120.00016 * 204.40821 * 7 5 4 10 10 H 1.48497 * 109.46932 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47026 * 119.99705 * 9 7 5 12 12 H 1.48503 * 109.46831 * 239.99931 * 9 7 5 13 13 C 1.34777 * 120.00435 * 91.04914 * 4 3 2 14 14 O 1.21284 * 120.00281 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99595 * 0.02562 * 13 4 3 16 16 H 1.08998 * 110.88487 * 62.35242 * 15 13 4 17 17 C 1.54631 * 110.96801 * 298.54140 * 15 13 4 18 18 C 1.51277 * 104.31345 * 217.01608 * 17 15 13 19 19 O 1.21290 * 124.94190 * 196.27658 * 18 17 15 20 20 N 1.34745 * 109.93345 * 16.31599 * 18 17 15 21 21 C 1.39973 * 124.29596 * 180.38163 * 20 18 17 22 22 C 1.38868 * 120.05526 * 179.68733 * 21 20 18 23 23 C 1.38115 * 119.93995 * 179.72794 * 22 21 20 24 24 C 1.38374 * 120.05567 * 0.54858 * 23 22 21 25 25 Cl 1.73607 * 119.94094 * 179.75013 * 24 23 22 26 26 C 1.38376 * 120.11908 * 359.72743 * 24 23 22 27 27 C 1.38112 * 120.05743 * 359.97438 * 26 24 23 28 28 C 1.46765 * 111.35158 * 0.35289 * 20 18 17 29 29 H 1.09005 * 109.46885 * 257.31031 * 3 2 1 30 30 H 1.09000 * 109.46873 * 137.31211 * 3 2 1 31 31 H 0.96992 * 120.00420 * 180.02562 * 8 7 5 32 32 H 1.08998 * 110.48439 * 335.76576 * 17 15 13 33 33 H 1.09002 * 110.48350 * 98.27094 * 17 15 13 34 34 H 1.08000 * 120.02730 * 0.02562 * 22 21 20 35 35 H 1.08006 * 119.96619 * 180.29480 * 23 22 21 36 36 H 1.08003 * 119.97765 * 179.97438 * 26 24 23 37 37 H 1.08000 * 120.03003 * 179.97438 * 27 26 24 38 38 H 1.09000 * 110.23945 * 224.02066 * 28 20 18 39 39 H 1.08999 * 110.24860 * 102.01655 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3177 -0.4110 5 6 3.3054 -2.2948 0.5279 6 1 3.7921 -3.2174 0.2483 7 6 2.8904 -2.0981 1.8394 8 7 1.9157 -1.2564 2.1008 9 14 3.7181 -3.0299 3.2308 10 1 4.7781 -3.9095 2.6757 11 1 4.3239 -2.0638 4.1820 12 1 2.7100 -3.8577 3.9405 13 6 3.3419 -1.5702 -1.7120 14 8 3.7472 -2.6615 -2.0522 15 6 3.1133 -0.4960 -2.7440 16 1 3.7642 0.3598 -2.5648 17 6 1.6285 -0.0652 -2.7748 18 6 1.3431 0.1889 -4.2384 19 8 0.3887 0.8052 -4.6633 20 7 2.3048 -0.3712 -4.9980 21 6 2.3404 -0.3116 -6.3960 22 6 3.3792 -0.9161 -7.0917 23 6 3.4090 -0.8606 -8.4714 24 6 2.4110 -0.1937 -9.1599 25 17 2.4548 -0.1203 -10.8939 26 6 1.3778 0.4144 -8.4688 27 6 1.3400 0.3566 -7.0894 28 6 3.3100 -1.0507 -4.1722 29 1 2.9712 0.2266 1.0026 30 1 2.9710 0.7562 -0.6968 31 1 1.6262 -1.1188 3.0162 32 1 0.9917 -0.8640 -2.3949 33 1 1.4836 0.8458 -2.1940 34 1 4.1605 -1.4332 -6.5546 35 1 4.2141 -1.3347 -9.0132 36 1 0.6003 0.9347 -9.0085 37 1 0.5337 0.8318 -6.5505 38 1 4.3125 -0.8194 -4.5320 39 1 3.1430 -2.1278 -4.1848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008263074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:17 Heat of formation + Delta-G solvation = 7.316784 kcal Electronic energy + Delta-G solvation = -27484.581556 eV Core-core repulsion = 23419.261937 eV Total energy + Delta-G solvation = -4065.319619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32428 -39.37196 -38.58936 -36.76456 -36.38087 -35.91257 -34.50026 -33.19879 -31.89018 -31.27884 -29.14223 -27.79494 -27.59986 -25.51780 -23.57002 -23.27556 -21.79723 -20.06865 -19.18030 -18.16746 -17.86931 -17.31024 -16.95467 -16.42903 -15.99182 -15.54570 -15.13039 -14.75009 -14.48395 -14.35731 -14.09236 -13.89642 -13.75921 -13.62049 -13.44486 -13.16666 -12.86020 -12.76339 -12.41049 -12.14372 -11.83077 -11.78547 -11.73524 -11.51977 -11.35117 -11.29228 -11.16964 -11.03870 -10.69375 -10.48748 -10.44887 -10.08435 -9.77878 -9.43565 -9.26316 -8.85975 -8.31836 -8.00557 -6.70868 -4.14192 0.89626 1.10226 1.99220 2.44138 2.62880 2.93754 3.13168 3.18818 3.30251 3.53011 3.57905 3.84894 3.93528 4.15656 4.32754 4.54223 4.65995 4.68254 4.73267 4.86400 4.97951 5.04000 5.13003 5.17382 5.31679 5.40690 5.44918 5.57506 5.70929 5.81407 5.82970 5.91734 5.97750 6.01847 6.10297 6.25861 6.38663 6.77495 6.89077 7.29918 7.63361 7.91804 8.06375 8.63453 8.78744 8.98827 9.47494 10.33992 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.002460 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.466009 B =11377.770908 C =12291.601226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.244 3.756 3 C 0.216 3.784 4 N -0.432 5.432 5 C -0.317 4.317 6 H 0.115 0.885 7 C 0.035 3.965 8 N -0.871 5.871 9 Si 0.927 3.073 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.457 3.543 14 O -0.569 6.569 15 C -0.115 4.115 16 H 0.113 0.887 17 C -0.147 4.147 18 C 0.525 3.475 19 O -0.507 6.507 20 N -0.561 5.561 21 C 0.182 3.818 22 C -0.148 4.148 23 C -0.080 4.080 24 C -0.067 4.067 25 Cl -0.080 7.080 26 C -0.080 4.080 27 C -0.151 4.151 28 C 0.114 3.886 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.276 0.724 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.092 0.908 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 5.556 -14.271 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.074 4.074 3 C 0.088 3.912 4 N -0.151 5.151 5 C -0.444 4.444 6 H 0.132 0.868 7 C -0.170 4.170 8 N -0.509 5.509 9 Si 0.753 3.247 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.244 3.756 14 O -0.453 6.453 15 C -0.137 4.137 16 H 0.131 0.869 17 C -0.187 4.187 18 C 0.316 3.684 19 O -0.382 6.382 20 N -0.284 5.284 21 C 0.087 3.913 22 C -0.169 4.169 23 C -0.099 4.099 24 C -0.095 4.095 25 Cl -0.051 7.051 26 C -0.099 4.099 27 C -0.172 4.172 28 C -0.008 4.008 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.182 0.818 38 H 0.110 0.890 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.612 5.397 -14.564 15.946 hybrid contribution 0.661 -0.420 0.853 1.158 sum 4.273 4.977 -13.711 15.199 Atomic orbital electron populations 1.80969 1.13372 1.08520 1.11663 1.29086 0.95223 0.92523 0.90602 1.18952 0.81995 0.86152 1.04083 1.43668 1.55552 1.10634 1.05225 1.19826 1.37582 0.99676 0.87266 0.86761 1.25272 0.94867 0.97753 0.99069 1.69853 1.22437 1.36935 1.21670 0.85848 0.79478 0.79265 0.80092 1.18954 1.20274 1.20829 1.19331 0.85562 0.88315 0.82372 1.90569 1.50750 1.24707 1.79238 1.22173 0.96629 1.00147 0.94779 0.86909 1.22619 0.97228 1.05426 0.93420 1.21197 0.80940 0.76963 0.89346 1.90599 1.29465 1.40015 1.78140 1.46099 1.26440 1.52007 1.03816 1.17914 0.95274 0.96521 0.81609 1.20802 0.99139 1.03351 0.93622 1.20801 0.97770 0.98064 0.93310 1.20852 0.99196 1.05197 0.84252 1.98354 1.98419 1.97547 1.10769 1.20932 0.97128 0.98327 0.93504 1.21668 1.00318 1.01508 0.93670 1.22200 0.91607 0.98947 0.88000 0.85129 0.89829 0.91309 0.86666 0.86976 0.84355 0.84588 0.84701 0.81850 0.89016 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.23 18.54 42.15 0.78 -9.45 16 2 C 0.24 4.85 9.98 -20.76 -0.21 4.64 16 3 C 0.22 3.73 4.75 -6.83 -0.03 3.70 16 4 N -0.43 -8.78 2.59 -117.93 -0.30 -9.09 16 5 C -0.32 -7.38 9.43 -14.93 -0.14 -7.52 16 6 H 0.11 2.85 7.30 -52.49 -0.38 2.46 16 7 C 0.03 0.79 4.92 -17.47 -0.09 0.70 16 8 N -0.87 -20.09 9.07 55.50 0.50 -19.59 16 9 Si 0.93 18.20 29.62 -169.99 -5.03 13.16 16 10 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 11 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 C 0.46 8.65 6.94 -10.98 -0.08 8.57 16 14 O -0.57 -12.66 15.16 5.55 0.08 -12.58 16 15 C -0.12 -1.59 2.57 -90.14 -0.23 -1.83 16 16 H 0.11 1.20 7.57 -51.93 -0.39 0.81 16 17 C -0.15 -2.19 4.24 -26.74 -0.11 -2.30 16 18 C 0.53 8.11 7.94 -10.72 -0.09 8.03 16 19 O -0.51 -8.96 14.81 5.55 0.08 -8.88 16 20 N -0.56 -7.61 3.15 -112.17 -0.35 -7.96 16 21 C 0.18 2.35 6.61 -83.68 -0.55 1.80 16 22 C -0.15 -1.59 9.41 -39.39 -0.37 -1.96 16 23 C -0.08 -0.80 9.82 -39.58 -0.39 -1.19 16 24 C -0.07 -0.72 6.32 -39.48 -0.25 -0.97 16 25 Cl -0.08 -0.78 28.95 -51.86 -1.50 -2.28 16 26 C -0.08 -0.89 9.82 -39.58 -0.39 -1.28 16 27 C -0.15 -1.97 9.31 -39.40 -0.37 -2.34 16 28 C 0.11 1.45 5.70 -3.12 -0.02 1.44 16 29 H 0.13 2.36 6.36 -51.93 -0.33 2.03 16 30 H 0.08 1.05 5.87 -51.93 -0.30 0.74 16 31 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 32 H 0.12 2.04 7.20 -51.93 -0.37 1.66 16 33 H 0.11 1.56 6.17 -51.93 -0.32 1.24 16 34 H 0.14 1.25 6.85 -52.49 -0.36 0.89 16 35 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 36 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 37 H 0.16 2.38 5.20 -52.49 -0.27 2.11 16 38 H 0.09 0.93 7.44 -51.93 -0.39 0.54 16 39 H 0.10 1.49 7.06 -51.93 -0.37 1.12 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -28.79 342.38 -7.36 -36.15 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.47 Total: 5.86 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -3.31 Total: 9.49 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.63 Total: -46.09 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.17 Total: -21.45 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.79 -7.36 -36.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008263074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.470 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds