Wall clock time and date at job start Wed Apr 1 2020 04:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47387 * 17.31120 * 3 2 1 5 5 C 1.37105 * 119.99983 * 271.05174 * 4 3 2 6 6 H 1.07998 * 120.00142 * 188.43337 * 5 4 3 7 7 C 1.38953 * 120.00015 * 8.43254 * 5 4 3 8 8 N 1.31407 * 120.00058 * 24.40505 * 7 5 4 9 9 Si 1.86802 * 120.00016 * 204.40821 * 7 5 4 10 10 H 1.48497 * 109.46932 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47026 * 119.99705 * 9 7 5 12 12 H 1.48503 * 109.46831 * 239.99931 * 9 7 5 13 13 C 1.34777 * 120.00435 * 91.04914 * 4 3 2 14 14 O 1.21284 * 120.00281 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99595 * 0.02562 * 13 4 3 16 16 H 1.08998 * 110.88487 * 62.35242 * 15 13 4 17 17 C 1.54631 * 110.96801 * 298.54140 * 15 13 4 18 18 C 1.51277 * 104.31345 * 217.01608 * 17 15 13 19 19 O 1.21290 * 124.94190 * 196.27658 * 18 17 15 20 20 N 1.34745 * 109.93345 * 16.31599 * 18 17 15 21 21 C 1.39973 * 124.29596 * 180.38163 * 20 18 17 22 22 C 1.38868 * 120.05526 * 179.68733 * 21 20 18 23 23 C 1.38115 * 119.93995 * 179.72794 * 22 21 20 24 24 C 1.38374 * 120.05567 * 0.54858 * 23 22 21 25 25 Cl 1.73607 * 119.94094 * 179.75013 * 24 23 22 26 26 C 1.38376 * 120.11908 * 359.72743 * 24 23 22 27 27 C 1.38112 * 120.05743 * 359.97438 * 26 24 23 28 28 C 1.46765 * 111.35158 * 0.35289 * 20 18 17 29 29 H 1.09005 * 109.46885 * 257.31031 * 3 2 1 30 30 H 1.09000 * 109.46873 * 137.31211 * 3 2 1 31 31 H 0.96992 * 120.00420 * 180.02562 * 8 7 5 32 32 H 1.08998 * 110.48439 * 335.76576 * 17 15 13 33 33 H 1.09002 * 110.48350 * 98.27094 * 17 15 13 34 34 H 1.08000 * 120.02730 * 0.02562 * 22 21 20 35 35 H 1.08006 * 119.96619 * 180.29480 * 23 22 21 36 36 H 1.08003 * 119.97765 * 179.97438 * 26 24 23 37 37 H 1.08000 * 120.03003 * 179.97438 * 27 26 24 38 38 H 1.09000 * 110.23945 * 224.02066 * 28 20 18 39 39 H 1.08999 * 110.24860 * 102.01655 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3177 -0.4110 5 6 3.3054 -2.2948 0.5279 6 1 3.7921 -3.2174 0.2483 7 6 2.8904 -2.0981 1.8394 8 7 1.9157 -1.2564 2.1008 9 14 3.7181 -3.0299 3.2308 10 1 4.7781 -3.9095 2.6757 11 1 4.3239 -2.0638 4.1820 12 1 2.7100 -3.8577 3.9405 13 6 3.3419 -1.5702 -1.7120 14 8 3.7472 -2.6615 -2.0522 15 6 3.1133 -0.4960 -2.7440 16 1 3.7642 0.3598 -2.5648 17 6 1.6285 -0.0652 -2.7748 18 6 1.3431 0.1889 -4.2384 19 8 0.3887 0.8052 -4.6633 20 7 2.3048 -0.3712 -4.9980 21 6 2.3404 -0.3116 -6.3960 22 6 3.3792 -0.9161 -7.0917 23 6 3.4090 -0.8606 -8.4714 24 6 2.4110 -0.1937 -9.1599 25 17 2.4548 -0.1203 -10.8939 26 6 1.3778 0.4144 -8.4688 27 6 1.3400 0.3566 -7.0894 28 6 3.3100 -1.0507 -4.1722 29 1 2.9712 0.2266 1.0026 30 1 2.9710 0.7562 -0.6968 31 1 1.6262 -1.1188 3.0162 32 1 0.9917 -0.8640 -2.3949 33 1 1.4836 0.8458 -2.1940 34 1 4.1605 -1.4332 -6.5546 35 1 4.2141 -1.3347 -9.0132 36 1 0.6003 0.9347 -9.0085 37 1 0.5337 0.8318 -6.5505 38 1 4.3125 -0.8194 -4.5320 39 1 3.1430 -2.1278 -4.1848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008263074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:16 Heat of formation + Delta-G solvation = -8.243083 kcal Electronic energy + Delta-G solvation = -27485.256283 eV Core-core repulsion = 23419.261937 eV Total energy + Delta-G solvation = -4065.994346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.46036 -40.68186 -39.68563 -37.93547 -37.54269 -37.23595 -36.13099 -34.42036 -33.44408 -32.14460 -30.19095 -29.13613 -28.90212 -27.03303 -24.74305 -24.25053 -22.86862 -21.17706 -20.54698 -19.80050 -18.92405 -18.58206 -18.04097 -17.79089 -17.26736 -16.75472 -16.26228 -16.16394 -15.79241 -15.67736 -15.27628 -15.02190 -14.89997 -14.72834 -14.60046 -14.39176 -14.12826 -14.09656 -13.72234 -13.41343 -13.35237 -13.06604 -12.91700 -12.81029 -12.60962 -12.49782 -12.41345 -12.25376 -12.06923 -12.04001 -11.86748 -11.11228 -11.04234 -10.95459 -10.41510 -10.11716 -9.99652 -8.96945 -8.42394 -5.90899 -0.03400 0.24506 1.16028 1.29781 1.37333 1.51298 1.57701 1.63852 1.77820 2.05671 2.31252 2.36948 2.63519 2.83463 2.98168 3.15346 3.32193 3.60710 3.73153 3.81594 3.82291 3.89444 4.10491 4.15592 4.25931 4.38486 4.41790 4.48358 4.56906 4.70887 4.90004 4.91779 4.96858 4.97965 5.06261 5.23108 5.34088 5.51441 5.79970 5.87046 5.98846 6.37185 6.77412 7.07248 7.11652 7.35359 7.87785 8.60284 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.002460 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.466009 B =11377.770908 C =12291.601226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.259 3.741 3 C 0.215 3.785 4 N -0.447 5.447 5 C -0.339 4.339 6 H 0.089 0.911 7 C 0.009 3.991 8 N -0.887 5.887 9 Si 0.981 3.019 10 H -0.270 1.270 11 H -0.264 1.264 12 H -0.293 1.293 13 C 0.461 3.539 14 O -0.605 6.605 15 C -0.102 4.102 16 H 0.161 0.839 17 C -0.140 4.140 18 C 0.523 3.477 19 O -0.537 6.537 20 N -0.554 5.554 21 C 0.159 3.841 22 C -0.140 4.140 23 C -0.076 4.076 24 C -0.069 4.069 25 Cl -0.069 7.069 26 C -0.082 4.082 27 C -0.167 4.167 28 C 0.117 3.883 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.275 0.725 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 6.387 -15.598 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.059 4.059 3 C 0.089 3.911 4 N -0.166 5.166 5 C -0.466 4.466 6 H 0.107 0.893 7 C -0.194 4.194 8 N -0.526 5.526 9 Si 0.806 3.194 10 H -0.194 1.194 11 H -0.189 1.189 12 H -0.220 1.220 13 C 0.250 3.750 14 O -0.490 6.490 15 C -0.124 4.124 16 H 0.179 0.821 17 C -0.181 4.181 18 C 0.313 3.687 19 O -0.414 6.414 20 N -0.276 5.276 21 C 0.065 3.935 22 C -0.161 4.161 23 C -0.095 4.095 24 C -0.097 4.097 25 Cl -0.041 7.041 26 C -0.101 4.101 27 C -0.187 4.187 28 C -0.004 4.004 29 H 0.144 0.856 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.177 0.823 35 H 0.180 0.820 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.759 6.235 -15.911 18.033 hybrid contribution -0.001 -0.749 1.102 1.333 sum 5.758 5.486 -14.809 16.810 Atomic orbital electron populations 1.80973 1.14835 1.09920 1.13236 1.29630 0.95769 0.91207 0.89247 1.19286 0.80224 0.86029 1.05567 1.43783 1.56068 1.11230 1.05474 1.19668 1.38385 0.99983 0.88546 0.89318 1.25779 0.94939 0.98463 1.00209 1.69931 1.22933 1.37911 1.21791 0.85054 0.78138 0.78248 0.77927 1.19445 1.18913 1.22011 1.20121 0.83349 0.88864 0.82676 1.90552 1.51770 1.26703 1.79967 1.22171 0.96661 0.99855 0.93703 0.82132 1.22495 0.97329 1.04846 0.93404 1.21217 0.80950 0.76926 0.89606 1.90594 1.30689 1.41589 1.78565 1.46032 1.25968 1.51333 1.04258 1.18124 0.96337 0.97846 0.81217 1.21035 0.98686 1.02404 0.93968 1.21124 0.97977 0.97220 0.93139 1.20998 0.99060 1.04741 0.84890 1.98362 1.98375 1.97480 1.09842 1.21041 0.97764 0.98405 0.92908 1.21563 1.00305 1.02386 0.94456 1.22240 0.93095 0.97743 0.87302 0.85574 0.84216 0.91438 0.89769 0.85822 0.82260 0.81992 0.83547 0.83852 0.85333 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.58 18.54 20.01 0.37 -22.21 16 2 C 0.26 10.19 9.98 89.44 0.89 11.08 16 3 C 0.22 7.10 4.75 84.58 0.40 7.50 16 4 N -0.45 -17.83 2.59 -645.42 -1.67 -19.50 16 5 C -0.34 -15.89 9.43 84.04 0.79 -15.10 16 6 H 0.09 4.55 7.30 -2.91 -0.02 4.53 16 7 C 0.01 0.40 4.92 84.93 0.42 0.81 16 8 N -0.89 -40.88 9.07 21.66 0.20 -40.68 16 9 Si 0.98 37.40 29.62 68.60 2.03 39.43 16 10 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 12 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.46 16.93 6.94 87.66 0.61 17.54 16 14 O -0.60 -26.79 15.16 -3.04 -0.05 -26.84 16 15 C -0.10 -2.57 2.57 -10.48 -0.03 -2.59 16 16 H 0.16 2.58 7.57 -2.39 -0.02 2.56 16 17 C -0.14 -4.04 4.24 30.59 0.13 -3.91 16 18 C 0.52 15.84 7.94 87.85 0.70 16.54 16 19 O -0.54 -19.25 14.81 -3.06 -0.05 -19.29 16 20 N -0.55 -14.16 3.15 -627.21 -1.97 -16.13 16 21 C 0.16 3.85 6.61 38.14 0.25 4.11 16 22 C -0.14 -2.61 9.41 22.39 0.21 -2.40 16 23 C -0.08 -1.27 9.82 22.27 0.22 -1.05 16 24 C -0.07 -1.33 6.32 22.34 0.14 -1.18 16 25 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 16 26 C -0.08 -1.74 9.82 22.27 0.22 -1.52 16 27 C -0.17 -4.26 9.31 22.39 0.21 -4.06 16 28 C 0.12 2.70 5.70 86.83 0.50 3.19 16 29 H 0.13 4.37 6.36 -2.38 -0.02 4.36 16 30 H 0.14 2.96 5.87 -2.39 -0.01 2.95 16 31 H 0.28 12.34 8.31 -92.71 -0.77 11.57 16 32 H 0.08 3.01 7.20 -2.39 -0.02 3.00 16 33 H 0.12 3.23 6.17 -2.39 -0.01 3.21 16 34 H 0.16 2.24 6.85 -2.91 -0.02 2.23 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.14 4.29 5.20 -2.91 -0.02 4.28 16 38 H 0.13 2.04 7.44 -2.39 -0.02 2.03 16 39 H 0.08 2.32 7.06 -2.39 -0.02 2.30 16 Total: -1.00 -65.05 342.38 5.58 -59.47 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.13 Total: 18.08 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 5.66 Total: 28.96 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -3.07 Total: -98.53 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.09 Total: -46.13 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -65.05 5.58 -59.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008263074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.227 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds