Wall clock time and date at job start Wed Apr 1 2020 04:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47504 * 272.57285 * 3 2 1 5 5 C 1.37099 * 119.99782 * 262.92481 * 4 3 2 6 6 H 1.08004 * 119.99112 * 203.17143 * 5 4 3 7 7 C 1.38941 * 120.00342 * 23.17152 * 5 4 3 8 8 N 1.31407 * 120.00152 * 5.46726 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 185.47013 * 7 5 4 10 10 H 1.48503 * 109.47042 * 59.99823 * 9 7 5 11 11 H 1.48498 * 109.47158 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46741 * 299.99892 * 9 7 5 13 13 C 1.34767 * 119.99639 * 82.91662 * 4 3 2 14 14 O 1.21302 * 120.00088 * 184.00845 * 13 4 3 15 15 C 1.50704 * 120.00549 * 4.00868 * 13 4 3 16 16 H 1.08997 * 110.85288 * 322.54869 * 15 13 4 17 17 C 1.54624 * 110.96746 * 86.37930 * 15 13 4 18 18 C 1.51278 * 104.19757 * 93.32392 * 17 15 13 19 19 O 1.21293 * 124.94552 * 196.28701 * 18 17 15 20 20 N 1.34421 * 110.11411 * 16.25153 * 18 17 15 21 21 C 1.39977 * 124.34897 * 180.42955 * 20 18 17 22 22 C 1.38866 * 120.05787 * 5.57062 * 21 20 18 23 23 C 1.38107 * 119.94202 * 179.69903 * 22 21 20 24 24 C 1.38386 * 120.05389 * 0.57751 * 23 22 21 25 25 Cl 1.73600 * 119.94147 * 179.69850 * 24 23 22 26 26 C 1.38380 * 120.11693 * 359.72304 * 24 23 22 27 27 C 1.38111 * 120.06047 * 359.97257 * 26 24 23 28 28 C 1.46757 * 111.30200 * 0.40644 * 20 18 17 29 29 H 1.08997 * 109.47216 * 32.57667 * 3 2 1 30 30 H 1.09008 * 109.46829 * 152.57287 * 3 2 1 31 31 H 0.97006 * 119.99665 * 179.97438 * 8 7 5 32 32 H 1.09001 * 110.48540 * 212.00471 * 17 15 13 33 33 H 1.09002 * 110.49030 * 334.64746 * 17 15 13 34 34 H 1.08004 * 120.02438 * 359.97438 * 22 21 20 35 35 H 1.07996 * 119.97322 * 180.29359 * 23 22 21 36 36 H 1.08007 * 119.97527 * 180.02562 * 26 24 23 37 37 H 1.07997 * 120.03293 * 180.02562 * 27 26 24 38 38 H 1.09002 * 110.24976 * 223.98483 * 28 20 18 39 39 H 1.09000 * 110.32136 * 102.01804 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.0611 1.3798 5 6 3.4623 1.0893 2.0296 6 1 4.1494 1.0442 2.8617 7 6 2.9493 2.3131 1.6176 8 7 2.0327 2.3583 0.6772 9 14 3.5627 3.8943 2.4007 10 1 5.0248 4.0237 2.1749 11 1 2.8625 5.0530 1.7905 12 1 3.2881 3.8629 3.8598 13 6 3.1859 -1.2488 2.0103 14 8 3.5207 -1.2933 3.1754 15 6 2.8700 -2.5218 1.2681 16 1 2.0357 -2.3743 0.5824 17 6 4.1158 -3.0496 0.5197 18 6 4.7469 -4.0234 1.4903 19 8 5.8817 -4.4445 1.4129 20 7 3.8671 -4.3535 2.4515 21 6 4.1434 -5.2291 3.5081 22 6 5.4273 -5.7299 3.6788 23 6 5.6986 -6.5887 4.7258 24 6 4.6896 -6.9596 5.5973 25 17 5.0322 -8.0455 6.9077 26 6 3.4080 -6.4669 5.4257 27 6 3.1327 -5.6028 4.3840 28 6 2.5800 -3.6776 2.2512 29 1 2.9717 -0.8651 -0.5533 30 1 2.9709 0.9131 -0.4734 31 1 1.6743 3.2127 0.3899 32 1 3.8219 -3.5611 -0.3970 33 1 4.8026 -2.2326 0.2983 34 1 6.2139 -5.4445 2.9960 35 1 6.6980 -6.9748 4.8619 36 1 2.6223 -6.7575 6.1074 37 1 2.1324 -5.2182 4.2508 38 1 2.2093 -3.2838 3.1976 39 1 1.8538 -4.3665 1.8196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008263082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:19 Heat of formation + Delta-G solvation = -13.974659 kcal Electronic energy + Delta-G solvation = -27588.238789 eV Core-core repulsion = 23521.995904 eV Total energy + Delta-G solvation = -4066.242886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.40732 -40.58389 -39.63114 -37.88414 -37.49287 -37.12763 -36.12203 -34.33660 -33.43689 -32.14002 -30.11929 -29.15494 -28.81796 -26.99780 -24.71550 -24.20914 -22.98638 -20.98800 -20.58920 -19.69807 -18.85174 -18.77700 -17.89208 -17.80489 -17.09394 -16.79666 -16.26971 -16.09086 -15.84535 -15.55114 -15.23798 -14.83353 -14.73394 -14.70695 -14.61867 -14.49531 -14.14186 -13.82057 -13.66164 -13.37717 -13.21001 -13.06857 -12.90138 -12.80111 -12.60840 -12.57010 -12.54388 -12.32633 -12.15665 -12.08634 -11.85756 -11.09658 -11.03085 -10.78490 -10.42312 -10.11522 -9.90212 -8.92262 -8.36410 -6.02920 0.00687 0.24724 1.15482 1.37848 1.43809 1.47093 1.53654 1.75231 1.81491 2.02950 2.29359 2.35354 2.66203 2.97610 3.04126 3.13860 3.37967 3.61596 3.75569 3.80016 3.87669 3.91157 4.18042 4.28216 4.37057 4.41451 4.53493 4.60881 4.65761 4.76869 4.82086 4.92040 4.97434 5.09571 5.09718 5.22398 5.37621 5.45589 5.85494 5.97211 6.04346 6.39854 6.90478 7.05237 7.12002 7.34025 7.88830 8.63161 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.002715 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.145143 B =10309.002492 C =10816.991272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.260 3.740 3 C 0.218 3.782 4 N -0.451 5.451 5 C -0.329 4.329 6 H 0.078 0.922 7 C 0.009 3.991 8 N -0.896 5.896 9 Si 0.981 3.019 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.287 1.287 13 C 0.455 3.545 14 O -0.609 6.609 15 C -0.112 4.112 16 H 0.144 0.856 17 C -0.130 4.130 18 C 0.512 3.488 19 O -0.546 6.546 20 N -0.552 5.552 21 C 0.163 3.837 22 C -0.167 4.167 23 C -0.082 4.082 24 C -0.072 4.072 25 Cl -0.069 7.069 26 C -0.078 4.078 27 C -0.146 4.146 28 C 0.114 3.886 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.274 0.726 32 H 0.169 0.831 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -15.529 -0.867 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.058 4.058 3 C 0.091 3.909 4 N -0.170 5.170 5 C -0.457 4.457 6 H 0.096 0.904 7 C -0.193 4.193 8 N -0.536 5.536 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.213 1.213 13 C 0.245 3.755 14 O -0.494 6.494 15 C -0.134 4.134 16 H 0.161 0.839 17 C -0.170 4.170 18 C 0.304 3.696 19 O -0.425 6.425 20 N -0.273 5.273 21 C 0.068 3.932 22 C -0.188 4.188 23 C -0.101 4.101 24 C -0.099 4.099 25 Cl -0.040 7.040 26 C -0.097 4.097 27 C -0.167 4.167 28 C -0.008 4.008 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.186 0.814 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.171 0.829 38 H 0.099 0.901 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.084 -15.652 -0.353 15.694 hybrid contribution 0.648 1.370 0.875 1.750 sum 1.732 -14.282 0.522 14.396 Atomic orbital electron populations 1.80943 1.14682 1.13651 1.09598 1.29749 0.95726 0.88977 0.91342 1.19202 0.80083 1.06754 0.84820 1.43674 1.56246 1.05497 1.11617 1.19539 1.25853 0.84241 1.16078 0.90425 1.25800 0.95040 1.01515 0.96943 1.69771 1.26715 1.27599 1.29489 0.85143 0.78857 0.77545 0.77766 1.18850 1.20298 1.21291 1.20717 0.82280 0.85612 0.86939 1.90580 1.52817 1.87276 1.18700 1.22307 1.01163 0.91679 0.98268 0.83874 1.22464 0.96411 0.99043 0.99086 1.21607 0.84453 0.81191 0.82378 1.90582 1.18757 1.57569 1.75574 1.45894 1.15668 1.42081 1.23683 1.18136 0.94577 0.91466 0.88976 1.21555 0.96453 1.00204 1.00557 1.21056 0.99642 0.96598 0.92840 1.20957 0.95644 0.99549 0.93789 1.98352 1.95447 1.62815 1.47401 1.21093 0.95547 0.95595 0.97465 1.20992 0.99455 1.00612 0.95645 1.22323 0.84182 0.93288 1.00997 0.84421 0.85062 0.91571 0.81404 0.86806 0.83744 0.83389 0.82239 0.82895 0.90117 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -20.99 18.54 20.01 0.37 -20.62 16 2 C 0.26 9.67 12.81 89.44 1.15 10.81 16 3 C 0.22 7.08 4.79 84.57 0.40 7.48 16 4 N -0.45 -18.46 2.61 -645.40 -1.68 -20.14 16 5 C -0.33 -15.93 9.28 84.04 0.78 -15.15 16 6 H 0.08 4.11 7.44 -2.91 -0.02 4.09 16 7 C 0.01 0.40 5.20 84.92 0.44 0.84 16 8 N -0.90 -41.25 8.95 21.66 0.19 -41.05 16 9 Si 0.98 39.06 29.56 68.60 2.03 41.09 16 10 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 11 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.46 17.65 6.66 87.66 0.58 18.23 16 14 O -0.61 -29.49 15.60 -3.10 -0.05 -29.54 16 15 C -0.11 -2.81 2.51 -10.48 -0.03 -2.84 16 16 H 0.14 2.78 6.40 -2.39 -0.02 2.76 16 17 C -0.13 -2.75 5.87 30.58 0.18 -2.58 16 18 C 0.51 14.98 7.92 87.90 0.70 15.68 16 19 O -0.55 -19.06 14.82 -3.07 -0.05 -19.10 16 20 N -0.55 -15.33 3.14 -627.66 -1.97 -17.30 16 21 C 0.16 4.60 6.60 38.14 0.25 4.85 16 22 C -0.17 -4.84 9.29 22.39 0.21 -4.64 16 23 C -0.08 -2.01 9.82 22.27 0.22 -1.79 16 24 C -0.07 -1.62 6.32 22.34 0.14 -1.48 16 25 Cl -0.07 -1.37 28.95 -2.72 -0.08 -1.45 16 26 C -0.08 -1.63 9.82 22.27 0.22 -1.41 16 27 C -0.15 -3.38 9.40 22.39 0.21 -3.17 16 28 C 0.11 2.67 5.47 86.83 0.48 3.15 16 29 H 0.14 2.81 6.47 -2.39 -0.02 2.80 16 30 H 0.13 4.64 6.26 -2.38 -0.01 4.62 16 31 H 0.27 12.42 8.31 -92.70 -0.77 11.65 16 32 H 0.17 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.55 7.90 -2.39 -0.02 2.53 16 34 H 0.15 4.71 5.26 -2.91 -0.02 4.69 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.15 2.89 7.02 -2.91 -0.02 2.86 16 38 H 0.08 2.26 6.94 -2.39 -0.02 2.24 16 39 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -69.20 349.62 5.82 -63.38 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.13 Total: 16.73 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 5.93 Total: 28.01 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -3.09 Total: -99.11 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.09 Total: -48.64 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -69.20 5.82 -63.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008263082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.401 kcal (2) G-P(sol) polarization free energy of solvation -69.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds