Wall clock time and date at job start Wed Apr 1 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21286 * 119.99889 * 2 1 4 4 N 1.34774 * 120.00332 * 179.72875 * 2 1 3 5 5 C 1.38890 * 120.00357 * 180.27359 * 4 2 1 6 6 N 1.29520 * 125.26879 * 179.71284 * 5 4 2 7 7 C 1.33643 * 115.66776 * 179.85574 * 6 5 4 8 8 C 1.47171 * 122.50260 * 180.23245 * 7 6 5 9 9 O 1.21653 * 119.99864 * 180.22548 * 8 7 6 10 10 N 1.34775 * 119.99991 * 0.21952 * 8 7 6 11 11 C 1.39853 * 120.00152 * 174.78599 * 10 8 7 12 12 C 1.38986 * 120.03623 * 326.14218 * 11 10 8 13 13 C 1.38156 * 120.06325 * 179.74353 * 12 11 10 14 14 C 1.38171 * 120.13990 * 0.54872 * 13 12 11 15 15 C 1.38918 * 120.07649 * 359.69961 * 14 13 12 16 16 O 1.35743 * 120.03349 * 180.02562 * 15 14 13 17 17 C 1.34833 * 116.99804 * 185.92510 * 16 15 14 18 18 H 1.07996 * 120.00466 * 5.40769 * 17 16 15 19 19 C 1.38653 * 119.99874 * 185.40302 * 17 16 15 20 20 N 1.31557 * 120.00154 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00032 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47405 * 89.99771 * 21 19 17 23 23 H 1.48497 * 109.47269 * 210.00327 * 21 19 17 24 24 H 1.48504 * 109.46888 * 330.00145 * 21 19 17 25 25 C 1.38728 * 120.03608 * 146.40758 * 11 10 8 26 26 C 1.34909 * 114.99017 * 0.43901 * 7 6 5 27 27 S 1.70983 * 109.20018 * 359.76964 * 26 7 6 28 28 H 1.09000 * 109.46761 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46730 * 119.99803 * 1 2 3 30 30 H 1.08998 * 109.46997 * 239.99539 * 1 2 3 31 31 H 0.97010 * 119.99689 * 0.27210 * 4 2 1 32 32 H 0.97002 * 120.00307 * 354.79725 * 10 8 7 33 33 H 1.08002 * 119.96673 * 0.02562 * 12 11 10 34 34 H 1.07993 * 119.92681 * 180.25321 * 13 12 11 35 35 H 1.07997 * 119.96689 * 179.72919 * 14 13 12 36 36 H 0.96999 * 120.00083 * 180.02562 * 20 19 17 37 37 H 1.08000 * 120.07181 * 359.96578 * 25 11 10 38 38 H 1.07997 * 125.39989 * 179.79079 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0055 5 6 3.5698 -1.1671 0.0113 6 7 4.3177 -2.2245 0.0221 7 6 5.6354 -2.0017 0.0229 8 6 6.6221 -3.0936 0.0296 9 8 7.8116 -2.8385 0.0341 10 7 6.2080 -4.3761 0.0307 11 6 7.1413 -5.4124 -0.0731 12 6 8.2900 -5.2403 -0.8364 13 6 9.2149 -6.2618 -0.9350 14 6 8.9959 -7.4612 -0.2849 15 6 7.8473 -7.6414 0.4754 16 8 7.6332 -8.8199 1.1141 17 6 6.4450 -8.9739 1.7325 18 1 5.6818 -8.2165 1.6322 19 6 6.2030 -10.1049 2.4973 20 7 7.1329 -11.0275 2.6198 21 14 4.5566 -10.3187 3.3535 22 1 3.6178 -11.0318 2.4505 23 1 4.7441 -11.1089 4.5967 24 1 3.9989 -8.9852 3.6940 25 6 6.9189 -6.6153 0.5812 26 6 5.9934 -0.7010 0.0216 27 16 4.5859 0.2697 0.0127 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5139 0.8899 31 1 1.6959 -2.0073 0.0055 32 1 5.2625 -4.5804 0.1033 33 1 8.4619 -4.3055 -1.3492 34 1 10.1087 -6.1242 -1.5253 35 1 9.7187 -8.2594 -0.3674 36 1 6.9634 -11.8188 3.1545 37 1 6.0252 -6.7529 1.1719 38 1 7.0082 -0.3314 0.0251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049297666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:07 Heat of formation + Delta-G solvation = -40.801254 kcal Electronic energy + Delta-G solvation = -26085.401244 eV Core-core repulsion = 22020.038776 eV Total energy + Delta-G solvation = -4065.362468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.00495 -41.37209 -40.65859 -39.72945 -38.11278 -36.08774 -35.74140 -34.23807 -31.94317 -31.09484 -30.41035 -30.11338 -27.43593 -26.69193 -24.32430 -23.53036 -22.77649 -22.48757 -21.09562 -19.98957 -19.54680 -19.29151 -18.34677 -17.89749 -17.70323 -17.15625 -16.94442 -16.79902 -16.50595 -16.10130 -15.90526 -15.56671 -15.49471 -15.19453 -15.07571 -14.60494 -14.39394 -14.20020 -13.59507 -13.44502 -13.30663 -13.15649 -13.09848 -12.81856 -12.64122 -12.50792 -12.24696 -12.12456 -11.59184 -11.39939 -11.31171 -11.17984 -11.07054 -10.74354 -10.55446 -9.54525 -9.36139 -8.90519 -8.46779 -6.15608 -0.62319 -0.13836 0.24456 0.54564 0.63561 0.76297 1.35516 1.43614 1.45045 1.46515 1.53268 2.00720 2.16544 2.18265 2.82478 3.10276 3.16269 3.47367 3.67706 3.95604 4.08837 4.12995 4.30013 4.41807 4.45682 4.51762 4.61047 4.65729 4.67570 4.87803 5.00131 5.10199 5.13162 5.33993 5.40002 5.62320 5.64631 5.72006 6.00865 6.11169 6.25753 6.47365 6.68697 6.92037 6.97455 7.76041 8.76161 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.002585 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.181114 B =10829.195445 C =13005.149253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.511 3.489 3 O -0.547 6.547 4 N -0.612 5.612 5 C 0.245 3.755 6 N -0.492 5.492 7 C 0.009 3.991 8 C 0.592 3.408 9 O -0.542 6.542 10 N -0.647 5.647 11 C 0.183 3.817 12 C -0.199 4.199 13 C -0.049 4.049 14 C -0.210 4.210 15 C 0.135 3.865 16 O -0.224 6.224 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.253 1.253 25 C -0.258 4.258 26 C -0.257 4.257 27 S 0.315 5.685 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.441 0.559 32 H 0.424 0.576 33 H 0.131 0.869 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.273 0.727 37 H 0.127 0.873 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.828 24.600 -6.492 30.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.301 3.699 3 O -0.424 6.424 4 N -0.265 5.265 5 C -0.125 4.125 6 N -0.216 5.216 7 C -0.126 4.126 8 C 0.378 3.622 9 O -0.419 6.419 10 N -0.291 5.291 11 C 0.089 3.911 12 C -0.220 4.220 13 C -0.067 4.067 14 C -0.229 4.229 15 C 0.084 3.916 16 O -0.130 6.130 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.219 4.219 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.279 4.279 26 C -0.401 4.401 27 S 0.567 5.433 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.283 0.717 32 H 0.262 0.738 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.985 25.744 -6.372 30.965 hybrid contribution -0.202 -1.905 0.590 2.005 sum -16.187 23.838 -5.782 29.389 Atomic orbital electron populations 1.21992 0.84436 1.07660 1.07546 1.22344 0.93369 0.81029 0.73158 1.90671 1.70560 1.31914 1.49237 1.43099 0.99960 1.12875 1.70571 1.24594 0.91388 0.93567 1.02970 1.66962 1.02706 1.30467 1.21415 1.19412 0.88824 0.93009 1.11314 1.17517 0.87232 0.81894 0.75512 1.90812 1.17055 1.83893 1.50188 1.43241 1.10833 1.04022 1.70983 1.17476 0.91383 0.86966 0.95268 1.20871 0.96028 1.00856 1.04252 1.20934 0.98745 0.90451 0.96584 1.20512 0.98104 1.00271 1.04047 1.19595 0.94290 0.85763 0.91947 1.83986 1.37266 1.30530 1.61198 1.21792 0.89779 1.07752 1.29678 0.88148 1.26594 1.03932 0.94209 0.97188 1.70183 1.35948 1.09867 1.39669 0.84597 0.74799 0.79430 0.77449 1.18537 1.19719 1.17659 1.20818 1.03977 0.94571 1.08582 1.27170 1.09403 0.97424 1.06060 1.84873 0.89328 1.03986 1.65110 0.87560 0.85945 0.86062 0.71662 0.73783 0.85139 0.82424 0.85876 0.91787 0.85514 0.78467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.09 10.32 71.24 0.74 0.83 16 2 C 0.51 4.78 7.90 87.66 0.69 5.47 16 3 O -0.55 -9.29 14.59 -3.05 -0.04 -9.33 16 4 N -0.61 -6.44 5.40 -309.98 -1.67 -8.11 16 5 C 0.25 4.53 8.36 179.27 1.50 6.03 16 6 N -0.49 -11.44 10.12 -187.17 -1.89 -13.34 16 7 C 0.01 0.23 6.66 40.45 0.27 0.50 16 8 C 0.59 19.59 7.52 86.59 0.65 20.24 16 9 O -0.54 -20.57 14.37 -4.20 -0.06 -20.63 16 10 N -0.65 -21.78 5.33 -306.69 -1.63 -23.41 16 11 C 0.18 7.32 6.26 38.16 0.24 7.56 16 12 C -0.20 -7.64 8.65 22.43 0.19 -7.44 16 13 C -0.05 -1.80 10.03 22.23 0.22 -1.58 16 14 C -0.21 -9.21 9.99 22.42 0.22 -8.99 16 15 C 0.14 6.90 6.64 22.56 0.15 7.05 16 16 O -0.22 -13.48 9.76 -22.69 -0.22 -13.70 16 17 C -0.41 -24.00 9.44 67.92 0.64 -23.36 16 18 H 0.10 5.33 5.30 -2.91 -0.02 5.31 16 19 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 20 N -0.92 -56.19 13.67 21.61 0.30 -55.90 16 21 Si 1.02 42.27 29.55 68.60 2.03 44.30 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 25 C -0.26 -11.75 9.04 22.52 0.20 -11.55 16 26 C -0.26 -5.68 10.55 67.05 0.71 -4.97 16 27 S 0.31 5.62 20.29 -56.49 -1.15 4.47 16 28 H 0.11 -0.01 8.12 -2.39 -0.02 -0.03 16 29 H 0.12 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.44 2.12 8.82 -92.70 -0.82 1.30 16 32 H 0.42 12.52 8.30 -92.71 -0.77 11.75 16 33 H 0.13 4.77 6.44 -2.91 -0.02 4.75 16 34 H 0.16 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.13 5.74 5.72 -2.91 -0.02 5.73 16 38 H 0.20 3.96 7.99 -2.91 -0.02 3.94 16 Total: -1.00 -81.68 352.67 2.13 -79.55 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.42 Total: 27.06 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 6.90 Total: -10.96 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.91 Total: -100.76 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -0.33 Total: -43.67 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.15 Total: 4.47 kcal Total: -81.68 2.13 -79.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049297666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.751 kcal (2) G-P(sol) polarization free energy of solvation -81.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds