Wall clock time and date at job start Wed Apr 1 2020 04:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35949 * 116.99920 * 2 1 4 4 C 1.38083 * 120.00240 * 0.28067 * 3 2 1 5 5 C 1.39989 * 119.83813 * 180.27118 * 4 3 2 6 6 C 1.46945 * 120.07639 * 179.71610 * 5 4 3 7 7 C 1.35061 * 120.00591 * 316.36923 * 6 5 4 8 8 C 1.46192 * 119.99781 * 348.67549 * 7 6 5 9 9 O 1.21735 * 119.99749 * 353.21463 * 8 7 6 10 10 N 1.34772 * 120.00028 * 173.21628 * 8 7 6 11 11 C 1.38928 * 119.99772 * 179.97438 * 10 8 7 12 12 N 1.30207 * 126.16560 * 0.02562 * 11 10 8 13 13 N 1.26093 * 117.64351 * 179.70602 * 12 11 10 14 14 C 1.29399 * 117.94020 * 0.55352 * 13 12 11 15 15 S 1.76485 * 107.86040 * 359.49505 * 14 13 12 16 16 C 1.40040 * 119.84050 * 359.45059 * 5 4 3 17 17 C 1.37647 * 119.99713 * 0.26758 * 16 5 4 18 18 C 1.39059 * 120.16650 * 0.02562 * 17 16 5 19 19 O 1.35607 * 119.91940 * 180.02562 * 18 17 16 20 20 C 1.34756 * 117.00313 * 354.29970 * 19 18 17 21 21 H 1.07998 * 120.00008 * 5.06248 * 20 19 18 22 22 C 1.38712 * 120.00379 * 185.06472 * 20 19 18 23 23 N 1.31514 * 119.99605 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00158 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47402 * 89.99684 * 24 22 20 26 26 H 1.48503 * 109.46950 * 209.99859 * 24 22 20 27 27 H 1.48504 * 109.47115 * 329.99560 * 24 22 20 28 28 H 1.09000 * 109.47135 * 300.00233 * 1 2 3 29 29 H 1.09005 * 109.46732 * 60.00270 * 1 2 3 30 30 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.07905 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.99878 * 136.37042 * 6 5 4 33 33 H 1.08002 * 120.00474 * 168.67682 * 7 6 5 34 34 H 0.96995 * 120.00365 * 359.97438 * 10 8 7 35 35 H 1.08003 * 126.07046 * 179.75146 * 14 13 12 36 36 H 1.07999 * 119.99752 * 180.25435 * 16 5 4 37 37 H 1.08005 * 119.91083 * 180.02562 * 17 16 5 38 38 H 0.97002 * 120.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 0.0059 5 6 1.9332 3.6149 0.0001 6 6 1.1381 4.8506 0.0000 7 6 0.0575 4.9584 -0.8031 8 6 -0.1815 3.9607 -1.8446 9 8 0.6538 3.1045 -2.0705 10 7 -1.3266 3.9890 -2.5548 11 6 -1.5535 3.0412 -3.5449 12 7 -0.7469 2.0773 -3.8851 13 7 -1.1187 1.3013 -4.8069 14 6 -2.2685 1.5216 -5.3580 15 16 -2.9870 2.9268 -4.5681 16 6 3.3321 3.6803 0.0001 17 6 4.0752 2.5217 0.0001 18 6 3.4405 1.2844 -0.0003 19 8 4.1776 0.1462 0.0003 20 6 5.5130 0.2819 -0.1180 21 1 5.9572 1.2663 -0.1254 22 6 6.3173 -0.8426 -0.2303 23 7 5.7765 -2.0414 -0.2209 24 14 8.1686 -0.6544 -0.3935 25 1 8.7869 -0.6523 0.9566 26 1 8.7132 -1.7863 -1.1856 27 1 8.4773 0.6250 -1.0814 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2156 2.3144 0.0109 32 1 1.4177 5.6728 0.6421 33 1 -0.6300 5.7816 -0.6759 34 1 -1.9924 4.6710 -2.3746 35 1 -2.7119 0.9452 -6.1566 36 1 3.8278 4.6399 -0.0002 37 1 5.1540 2.5738 0.0005 38 1 6.3389 -2.8279 -0.2990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054194360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:58 Heat of formation + Delta-G solvation = 18.846940 kcal Electronic energy + Delta-G solvation = -27577.413955 eV Core-core repulsion = 23514.638027 eV Total energy + Delta-G solvation = -4062.775928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.24173 -41.42197 -40.65450 -39.26529 -37.93755 -36.26418 -34.58113 -33.94532 -31.75470 -31.06700 -30.03203 -28.22997 -27.55563 -27.18429 -25.02255 -23.47551 -23.00645 -21.81092 -20.94446 -20.03916 -19.84790 -19.07564 -18.54370 -18.21486 -17.42722 -17.08576 -16.88219 -16.69453 -16.34381 -15.83030 -15.66328 -15.57663 -15.37454 -15.24664 -14.96383 -14.60667 -14.32597 -14.25139 -13.79282 -13.50973 -13.18377 -12.88792 -12.72390 -12.63265 -12.50204 -12.19575 -12.07986 -11.92328 -11.61135 -11.35416 -11.25124 -10.90867 -10.70791 -10.67301 -10.40881 -9.83697 -9.13892 -8.51169 -8.45262 -6.11010 -0.61537 -0.44834 -0.05177 0.18486 0.68406 1.02524 1.32668 1.44882 1.52326 1.64780 1.83449 2.17712 2.35022 2.56667 2.85077 3.14624 3.33577 3.45824 3.78648 3.90003 4.05833 4.12940 4.17901 4.25846 4.30066 4.49692 4.51127 4.53610 4.62107 4.72155 4.98256 5.01467 5.09670 5.17154 5.22530 5.51707 5.59777 5.73202 5.96607 6.07107 6.17767 6.62823 6.96891 7.06173 7.71837 7.81947 8.77866 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.003131 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.868876 B = 8940.665904 C = 9900.693606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.025 3.975 4 C -0.078 4.078 5 C -0.135 4.135 6 C 0.022 3.978 7 C -0.225 4.225 8 C 0.515 3.485 9 O -0.498 6.498 10 N -0.609 5.609 11 C 0.244 3.756 12 N -0.328 5.328 13 N -0.290 5.290 14 C 0.000 4.000 15 S 0.133 5.867 16 C -0.072 4.072 17 C -0.231 4.231 18 C 0.097 3.903 19 O -0.222 6.222 20 C -0.416 4.416 21 H 0.105 0.895 22 C -0.027 4.027 23 N -0.921 5.921 24 Si 1.024 2.976 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.251 1.251 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.445 0.555 35 H 0.258 0.742 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.499 20.486 -4.631 30.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.263 6.263 3 C -0.019 4.019 4 C -0.097 4.097 5 C -0.136 4.136 6 C 0.003 3.997 7 C -0.246 4.246 8 C 0.304 3.696 9 O -0.369 6.369 10 N -0.264 5.264 11 C -0.127 4.127 12 N -0.171 5.171 13 N -0.123 5.123 14 C -0.303 4.303 15 S 0.369 5.631 16 C -0.090 4.090 17 C -0.250 4.250 18 C 0.046 3.954 19 O -0.129 6.129 20 C -0.492 4.492 21 H 0.122 0.878 22 C -0.224 4.224 23 N -0.558 5.558 24 Si 0.843 3.157 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.175 1.175 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.202 0.798 33 H 0.211 0.789 34 H 0.288 0.712 35 H 0.273 0.727 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.508 19.105 -4.687 29.147 hybrid contribution 0.347 -0.500 -0.329 0.692 sum -21.161 18.605 -5.015 28.619 Atomic orbital electron populations 1.23015 0.77960 1.04181 1.00665 1.86135 1.22224 1.27661 1.90235 1.18411 0.89227 0.85714 1.08561 1.20766 0.98076 0.90379 1.00451 1.18769 0.93252 0.93088 1.08507 1.22719 0.89717 0.93651 0.93635 1.22939 1.02521 1.01667 0.97428 1.19793 0.80531 0.85858 0.83369 1.91207 1.43428 1.36774 1.65495 1.43070 1.22084 1.29240 1.32047 1.27487 0.94197 0.94695 0.96327 1.71656 1.28021 1.04551 1.12900 1.70986 1.14518 1.21419 1.05403 1.31853 0.93556 0.99309 1.05594 1.85369 1.17150 1.30005 1.30554 1.21149 0.92748 0.97476 0.97594 1.20950 1.00653 0.91238 1.12166 1.19527 0.89459 0.88183 0.98239 1.83961 1.20147 1.27972 1.80802 1.21958 0.79051 0.95764 1.52406 0.87807 1.26746 1.06425 0.93456 0.95810 1.70231 1.38458 0.98783 1.48362 0.84526 0.72869 0.79007 0.79335 1.18231 1.19648 1.17499 0.91483 0.94297 0.87532 0.85577 0.79830 0.78904 0.71198 0.72653 0.82607 0.85399 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.81 113.37 1.11 2.51 16 2 O -0.35 -18.57 10.28 -79.01 -0.81 -19.38 16 3 C 0.03 1.32 6.70 22.57 0.15 1.47 16 4 C -0.08 -3.14 5.58 22.66 0.13 -3.02 16 5 C -0.14 -4.55 4.54 -20.14 -0.09 -4.65 16 6 C 0.02 0.42 9.80 23.82 0.23 0.65 16 7 C -0.22 -3.44 9.90 23.61 0.23 -3.20 16 8 C 0.52 12.82 6.73 86.31 0.58 13.40 16 9 O -0.50 -19.35 10.89 -4.46 -0.05 -19.40 16 10 N -0.61 -10.76 5.40 -313.06 -1.69 -12.45 16 11 C 0.24 5.75 8.42 179.06 1.51 7.26 16 12 N -0.33 -11.43 9.79 -55.71 -0.55 -11.98 16 13 N -0.29 -9.09 11.56 -57.36 -0.66 -9.76 16 14 C 0.00 0.00 12.68 130.60 1.66 1.66 16 15 S 0.13 1.72 23.54 -56.49 -1.33 0.40 16 16 C -0.07 -2.64 9.78 22.57 0.22 -2.41 16 17 C -0.23 -11.10 9.14 22.33 0.20 -10.90 16 18 C 0.10 5.59 6.67 22.80 0.15 5.74 16 19 O -0.22 -15.14 9.52 -6.44 -0.06 -15.21 16 20 C -0.42 -26.49 9.48 67.93 0.64 -25.84 16 21 H 0.10 5.99 5.18 -2.91 -0.02 5.98 16 22 C -0.03 -1.67 5.49 84.85 0.47 -1.21 16 23 N -0.92 -61.36 13.67 21.62 0.30 -61.07 16 24 Si 1.02 46.01 29.55 68.60 2.03 48.04 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 28 H 0.07 2.12 7.65 -2.39 -0.02 2.10 16 29 H 0.04 1.51 7.67 -2.38 -0.02 1.49 16 30 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.13 4.51 5.25 -2.91 -0.02 4.50 16 32 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 34 H 0.45 2.77 8.80 -92.71 -0.82 1.95 16 35 H 0.26 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.13 6.09 5.62 -2.91 -0.02 6.08 16 38 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 Total: -1.00 -105.06 349.10 4.71 -100.35 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.34 Total: 18.98 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 7.20 Total: -18.54 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -2.60 Total: -95.25 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.92 Total: -53.99 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.33 Total: 0.40 kcal Total: -105.06 4.71 -100.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054194360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.202 kcal (2) G-P(sol) polarization free energy of solvation -105.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds