Wall clock time and date at job start Wed Apr 1 2020 04:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46946 * 269.99453 * 3 2 1 5 5 H 1.48494 * 109.47335 * 29.99646 * 3 2 1 6 6 H 1.48497 * 109.47133 * 149.99980 * 3 2 1 7 7 C 1.38648 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99992 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.35750 * 116.99962 * 185.05714 * 9 7 2 11 11 C 1.38881 * 120.06886 * 354.46166 * 10 9 7 12 12 C 1.38102 * 119.92921 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06791 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.92929 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47051 * 89.99772 * 14 13 12 16 16 C 1.38522 * 120.00052 * 179.97438 * 15 14 13 17 17 N 1.32580 * 119.55070 * 0.02562 * 16 15 14 18 18 C 1.31624 * 121.79084 * 180.02562 * 17 16 15 19 19 C 1.39563 * 120.66693 * 359.97438 * 18 17 16 20 20 C 1.47543 * 120.47971 * 179.97438 * 19 18 17 21 21 N 1.34778 * 119.99295 * 359.97438 * 20 19 18 22 22 O 1.21583 * 120.00335 * 179.97438 * 20 19 18 23 23 C 1.40349 * 119.04813 * 0.25342 * 19 18 17 24 24 C 1.37955 * 118.36547 * 359.50506 * 23 19 18 25 25 Cl 1.73600 * 120.38485 * 180.21885 * 24 23 19 26 26 C 1.38300 * 120.13892 * 0.25283 * 13 12 11 27 27 C 1.38097 * 120.06972 * 359.45243 * 26 13 12 28 28 H 0.96996 * 120.00089 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.03410 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96229 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.46869 * 329.99923 * 14 13 12 32 32 H 1.08994 * 109.46923 * 209.99983 * 14 13 12 33 33 H 0.97006 * 120.00148 * 0.02562 * 15 14 13 34 34 H 1.07996 * 119.66885 * 179.97438 * 18 17 16 35 35 H 0.97001 * 120.00716 * 0.02562 * 21 20 19 36 36 H 0.97007 * 119.99777 * 179.71812 * 21 20 19 37 37 H 1.07994 * 120.81356 * 179.74444 * 23 19 18 38 38 H 1.08003 * 119.96497 * 179.70162 * 26 13 12 39 39 H 1.08000 * 120.03746 * 180.26799 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2039 13 6 3.5685 -5.8203 0.3245 14 6 4.3848 -7.0817 0.4423 15 7 4.6554 -7.3580 1.8553 16 6 5.3938 -8.4739 2.2138 17 7 5.8515 -9.2856 1.2708 18 6 6.5570 -10.3581 1.5615 19 6 6.8501 -10.6794 2.8877 20 6 7.6408 -11.8829 3.2090 21 7 8.0851 -12.6814 2.2183 22 8 7.8914 -12.1544 4.3673 23 6 6.3769 -9.8444 3.9117 24 6 5.6458 -8.7280 3.5619 25 17 5.0400 -7.6562 4.7857 26 6 2.1872 -5.8890 0.3315 27 6 1.4365 -4.7345 0.2293 28 1 -0.4850 0.8400 -0.0004 29 1 3.9526 -2.4845 -0.0002 30 1 5.2811 -4.5470 0.1938 31 1 5.3273 -6.9555 -0.0903 32 1 3.8311 -7.9145 0.0088 33 1 4.3170 -6.7599 2.5400 34 1 6.9126 -10.9959 0.7659 35 1 7.8854 -12.4647 1.2941 36 1 8.6084 -13.4706 2.4292 37 1 6.5834 -10.0682 4.9478 38 1 1.6952 -6.8463 0.4210 39 1 0.3579 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068906497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:57 Heat of formation + Delta-G solvation = -31.784749 kcal Electronic energy + Delta-G solvation = -25654.376782 eV Core-core repulsion = 21587.361593 eV Total energy + Delta-G solvation = -4067.015189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70945 -40.85218 -40.01741 -38.66886 -37.65761 -36.60781 -34.76907 -34.32919 -33.34746 -32.27160 -31.82233 -30.11114 -27.66563 -26.42198 -25.16746 -24.02297 -23.66000 -22.08703 -21.90772 -19.89795 -19.44758 -18.97723 -18.66777 -18.32546 -17.17344 -16.59733 -16.47050 -16.37190 -16.16557 -16.09956 -15.57179 -15.50856 -15.41629 -15.06805 -14.91401 -14.50998 -14.40096 -14.29554 -14.03005 -13.76410 -13.47091 -13.06389 -13.02128 -12.53608 -12.40563 -12.33841 -12.15516 -12.08552 -11.50091 -11.41036 -11.18266 -10.83506 -10.70594 -10.65009 -10.59474 -9.82514 -9.03638 -8.83206 -8.49633 -6.17932 -0.28212 0.03013 0.51894 0.56830 1.01072 1.34702 1.42872 1.51739 1.83174 2.08070 2.15943 2.58405 2.76782 2.82275 3.13785 3.33523 3.47739 3.70990 3.75321 3.88790 3.98779 4.03317 4.13637 4.16598 4.48517 4.55306 4.59125 4.75050 4.81036 4.88581 5.03685 5.13317 5.18672 5.25657 5.50856 5.68019 5.73887 5.90008 5.93514 6.00168 6.10880 6.16942 6.46435 6.91297 6.95177 7.34586 7.74329 8.73089 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.001905 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.193767 B =14692.936083 C =15100.249711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.246 4.246 12 C -0.045 4.045 13 C -0.188 4.188 14 C 0.195 3.805 15 N -0.698 5.698 16 C 0.436 3.564 17 N -0.539 5.539 18 C 0.212 3.788 19 C -0.263 4.263 20 C 0.579 3.421 21 N -0.828 5.828 22 O -0.594 6.594 23 C 0.032 3.968 24 C -0.181 4.181 25 Cl -0.058 7.058 26 C -0.043 4.043 27 C -0.207 4.207 28 H 0.273 0.727 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.413 0.587 34 H 0.208 0.792 35 H 0.417 0.583 36 H 0.414 0.586 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.310 -23.092 1.576 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.265 4.265 12 C -0.063 4.063 13 C -0.189 4.189 14 C 0.073 3.927 15 N -0.326 5.326 16 C 0.197 3.803 17 N -0.258 5.258 18 C 0.050 3.950 19 C -0.272 4.272 20 C 0.365 3.635 21 N -0.392 5.392 22 O -0.476 6.476 23 C 0.005 3.995 24 C -0.215 4.215 25 Cl -0.029 7.029 26 C -0.061 4.061 27 C -0.226 4.226 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.224 0.776 35 H 0.250 0.750 36 H 0.247 0.753 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.641 -22.543 1.331 27.470 hybrid contribution -0.108 1.146 1.049 1.557 sum 15.532 -21.397 2.380 26.547 Atomic orbital electron populations 1.70176 1.08006 1.28860 1.48560 1.26583 0.96841 1.02763 0.95815 0.84598 0.77821 0.74617 0.79284 1.18747 1.19716 1.17659 1.21821 0.92551 0.81329 1.53220 0.87925 1.83948 1.36096 1.12691 1.80799 1.20009 0.91665 0.87961 0.93213 1.21257 0.93017 1.00152 1.12073 1.20971 0.99834 0.90784 0.94741 1.19593 0.93511 0.94523 1.11256 1.20011 0.98817 0.93448 0.80470 1.45183 1.53962 1.23868 1.09621 1.18383 0.87448 0.87319 0.87169 1.67515 1.17362 1.07179 1.33742 1.23346 0.86917 0.90162 0.94597 1.20485 1.10945 1.00785 0.95006 1.17874 0.78120 0.82574 0.84935 1.43513 1.56910 1.28983 1.09837 1.90816 1.60309 1.74667 1.21775 1.21377 0.88221 0.88701 1.01163 1.21110 1.11934 0.99383 0.89118 1.98380 1.86860 1.63974 1.53719 1.20910 0.93205 0.96952 0.95051 1.20467 1.00094 0.90501 1.11562 0.91801 0.86283 0.84235 0.89967 0.89723 0.74821 0.77572 0.75006 0.75303 0.83357 0.83414 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.67 21.61 0.30 -55.16 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 3 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.41 -23.44 9.49 67.92 0.64 -22.79 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.41 9.76 -22.79 -0.22 -13.63 16 10 C 0.12 5.81 6.65 22.58 0.15 5.96 16 11 C -0.25 -10.01 9.17 22.39 0.21 -9.81 16 12 C -0.04 -1.39 9.69 22.25 0.22 -1.17 16 13 C -0.19 -5.08 5.25 -19.83 -0.10 -5.18 16 14 C 0.19 3.96 5.79 85.63 0.50 4.45 16 15 N -0.70 -14.38 5.64 -348.79 -1.97 -16.34 16 16 C 0.44 8.69 7.47 133.26 1.00 9.68 16 17 N -0.54 -9.13 9.52 -192.26 -1.83 -10.96 16 18 C 0.21 2.40 10.71 85.04 0.91 3.31 16 19 C -0.26 -4.00 5.89 -19.99 -0.12 -4.12 16 20 C 0.58 9.02 8.04 86.70 0.70 9.71 16 21 N -0.83 -4.46 8.83 -175.81 -1.55 -6.01 16 22 O -0.59 -14.90 17.25 -3.98 -0.07 -14.97 16 23 C 0.03 0.60 9.50 22.72 0.22 0.82 16 24 C -0.18 -3.64 6.35 22.50 0.14 -3.49 16 25 Cl -0.06 -1.20 27.59 -2.72 -0.08 -1.28 16 26 C -0.04 -1.28 9.69 22.25 0.22 -1.06 16 27 C -0.21 -8.23 9.99 22.39 0.22 -8.01 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.12 4.99 5.64 -2.91 -0.02 4.98 16 30 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 32 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.41 9.07 7.09 -92.70 -0.66 8.41 16 34 H 0.21 0.29 6.40 -2.91 -0.02 0.27 16 35 H 0.42 -0.68 6.88 -92.71 -0.64 -1.32 16 36 H 0.41 1.42 8.93 -92.70 -0.83 0.59 16 37 H 0.15 2.90 7.73 -2.91 -0.02 2.88 16 38 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -76.62 358.83 1.01 -75.61 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.95 Total: 21.19 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 5.36 Total: -22.47 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -5.05 Total: -88.47 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.29 Total: -28.59 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -76.62 1.01 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068906497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.829 kcal (2) G-P(sol) polarization free energy of solvation -76.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds