Wall clock time and date at job start Wed Apr 1 2020 04:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99832 * 2 1 4 4 C 1.53003 * 109.46944 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47320 * 65.00056 * 4 3 2 6 6 C 1.46501 * 119.99940 * 277.16567 * 5 4 3 7 7 C 1.50704 * 109.46806 * 274.72268 * 6 5 4 8 8 H 1.08000 * 120.00044 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99915 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00303 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00085 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47098 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47476 * 120.00073 * 11 9 7 14 14 H 1.48498 * 109.47226 * 240.00339 * 11 9 7 15 15 S 1.65591 * 119.99972 * 96.88587 * 5 4 3 16 16 O 1.42104 * 106.40174 * 212.82810 * 15 5 4 17 17 O 1.42102 * 106.40586 * 345.74249 * 15 5 4 18 18 C 1.76201 * 107.21939 * 99.28482 * 15 5 4 19 19 C 1.38234 * 119.99007 * 114.87630 * 18 15 5 20 20 C 1.38337 * 119.98419 * 179.78955 * 19 18 15 21 21 Cl 1.73593 * 120.01580 * 180.25160 * 20 19 18 22 22 C 1.38380 * 119.97173 * 0.48997 * 20 19 18 23 23 C 1.38195 * 119.98451 * 359.74131 * 22 20 19 24 24 C 1.38216 * 119.99308 * 295.15652 * 18 15 5 25 25 C 1.50695 * 119.98774 * 359.97438 * 24 18 15 26 26 H 1.09004 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46911 * 299.99979 * 1 2 3 28 28 H 1.08999 * 109.47157 * 59.99879 * 1 2 3 29 29 H 1.08996 * 109.47143 * 60.00073 * 3 2 1 30 30 H 1.08995 * 109.47215 * 299.99673 * 3 2 1 31 31 H 1.09008 * 109.47048 * 304.99792 * 4 3 2 32 32 H 1.09003 * 109.47120 * 185.00347 * 4 3 2 33 33 H 1.09004 * 109.47330 * 34.71840 * 6 5 4 34 34 H 1.08998 * 109.47511 * 154.72258 * 6 5 4 35 35 H 0.96998 * 120.00239 * 180.02562 * 10 9 7 36 36 H 1.08003 * 120.01074 * 0.02562 * 19 18 15 37 37 H 1.07994 * 120.00913 * 179.72221 * 22 20 19 38 38 H 1.08003 * 119.99408 * 179.97438 * 23 22 20 39 39 H 1.09000 * 109.47286 * 83.85720 * 25 24 18 40 40 H 1.09002 * 109.47649 * 203.85792 * 25 24 18 41 41 H 1.08998 * 109.47504 * 323.85842 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.9555 -0.8935 -1.3947 7 6 5.2307 -1.4703 -0.8359 8 1 5.9813 -0.8163 -0.4173 9 6 5.4395 -2.8329 -0.8600 10 7 4.5262 -3.6293 -1.3711 11 14 7.0205 -3.5479 -0.1680 12 1 7.8784 -2.4491 0.3437 13 1 6.6979 -4.4809 0.9414 14 1 7.7418 -4.2822 -1.2383 15 16 4.4897 1.5117 -2.5100 16 8 4.1150 0.8346 -3.7018 17 8 4.0785 2.8379 -2.2075 18 6 6.2513 1.5165 -2.4732 19 6 6.9656 0.9490 -3.5118 20 6 8.3487 0.9567 -3.4849 21 17 9.2466 0.2501 -4.7918 22 6 9.0162 1.5235 -2.4134 23 6 8.3009 2.0862 -1.3735 24 6 6.9186 2.0824 -1.4032 25 6 6.1392 2.6957 -0.2687 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8410 32 1 3.9786 2.1766 0.0890 33 1 3.1034 -1.2999 -0.8496 34 1 3.8701 -1.1548 -2.4495 35 1 4.6730 -4.5880 -1.3877 36 1 6.4441 0.5031 -4.3458 37 1 10.0959 1.5258 -2.3896 38 1 8.8216 2.5282 -0.5369 39 1 5.8491 1.9164 0.4360 40 1 6.7588 3.4338 0.2407 41 1 5.2457 3.1807 -0.6619 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078405443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:14 Heat of formation + Delta-G solvation = -93.460942 kcal Electronic energy + Delta-G solvation = -27778.696644 eV Core-core repulsion = 23812.158175 eV Total energy + Delta-G solvation = -3966.538469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.31905 -37.80450 -36.90509 -36.39677 -35.46989 -35.33486 -32.67984 -32.40687 -31.21839 -29.55713 -26.99178 -26.63757 -25.64660 -23.37602 -22.78722 -21.90010 -21.55627 -18.56505 -17.58358 -17.09559 -16.41738 -16.13615 -15.93340 -15.70981 -15.46843 -14.96530 -14.60543 -14.58804 -14.37950 -13.90984 -13.61462 -13.50752 -12.88720 -12.71914 -12.63615 -12.35403 -12.17285 -12.03663 -11.80514 -11.70410 -11.51149 -11.34371 -11.27211 -11.14898 -11.04550 -10.98698 -10.87947 -10.60446 -10.37244 -10.29672 -10.04018 -9.73091 -9.29838 -9.24026 -8.48996 -8.42424 -8.04401 -6.04794 -4.10057 0.79824 1.05595 1.28038 2.20772 3.27069 3.33366 3.35811 3.38232 3.65004 4.15125 4.21614 4.41621 4.64141 4.82804 4.94821 4.97592 5.28995 5.30285 5.35288 5.40303 5.49925 5.50912 5.63104 5.64430 5.67377 5.73140 5.74577 5.80673 5.95645 6.03690 6.10439 6.19200 6.27734 6.36977 6.49030 6.78741 7.42515 7.50674 7.54194 7.75874 7.93448 8.21879 8.94247 9.55078 11.03189 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.005789 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.318521 B = 4835.849871 C = 6411.652028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.119 3.881 5 N -0.970 5.970 6 C 0.244 3.756 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.068 3.932 10 N -0.886 5.886 11 Si 0.886 3.114 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 S 2.689 3.311 16 O -0.956 6.956 17 O -0.977 6.977 18 C -0.648 4.648 19 C 0.003 3.997 20 C -0.063 4.063 21 Cl -0.071 7.071 22 C -0.060 4.060 23 C -0.135 4.135 24 C 0.029 3.971 25 C -0.179 4.179 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.262 0.738 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 12.346 2.260 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.035 4.035 4 C -0.008 4.008 5 N -0.810 5.810 6 C 0.123 3.877 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.525 5.525 11 Si 0.714 3.286 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 S 2.778 3.222 16 O -0.947 6.947 17 O -0.967 6.967 18 C -0.733 4.733 19 C -0.017 4.017 20 C -0.090 4.090 21 Cl -0.043 7.043 22 C -0.079 4.079 23 C -0.153 4.153 24 C 0.027 3.973 25 C -0.235 4.235 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.913 12.333 1.502 12.570 hybrid contribution 1.695 -0.777 0.535 1.940 sum 3.608 11.556 2.037 12.276 Atomic orbital electron populations 1.22711 0.82320 1.02529 0.99105 1.88121 1.18482 1.26872 1.95136 1.23089 0.95189 0.85359 0.99871 1.21548 0.91734 0.98758 0.88718 1.57265 1.76758 1.19609 1.27319 1.19388 0.98556 0.70854 0.98946 1.21574 1.03401 0.92079 1.40632 0.92189 1.24874 0.96395 0.97031 0.95247 1.69943 1.33747 1.04023 1.44752 0.86634 0.83837 0.79271 0.78874 1.19801 1.20961 1.20932 1.02042 0.73520 0.72821 0.73807 1.93547 1.81136 1.74743 1.45227 1.93456 1.81192 1.37117 1.84948 1.31026 1.28318 1.11868 1.02077 1.20783 0.92092 0.91807 0.97036 1.20876 0.92359 1.03412 0.92351 1.98356 1.74892 1.82944 1.48064 1.21206 1.00376 0.94466 0.91839 1.21044 0.93405 1.02032 0.98867 1.19512 0.94185 0.90978 0.92591 1.21906 1.02442 1.02104 0.97051 0.89803 0.94781 0.94573 0.92883 0.93481 0.88842 0.88823 0.91706 0.93645 0.92768 0.83131 0.84694 0.84632 0.88558 0.90043 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.48 8.85 -35.23 -0.31 -6.79 16 3 C 0.04 0.66 6.28 37.16 0.23 0.90 16 4 C 0.12 1.91 4.51 -4.04 -0.02 1.90 16 5 N -0.97 -19.26 2.71 -115.65 -0.31 -19.58 16 6 C 0.24 5.97 5.29 -5.19 -0.03 5.94 16 7 C -0.54 -13.97 9.38 -34.44 -0.32 -14.29 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 10 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 11 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 S 2.69 52.46 5.06 -107.50 -0.54 51.92 16 16 O -0.96 -21.60 15.74 -57.17 -0.90 -22.50 16 17 O -0.98 -18.12 14.33 -57.17 -0.82 -18.94 16 18 C -0.65 -11.79 5.91 -39.59 -0.23 -12.03 16 19 C 0.00 0.05 9.33 -39.55 -0.37 -0.32 16 20 C -0.06 -1.02 6.32 -39.49 -0.25 -1.27 16 21 Cl -0.07 -1.05 28.96 -51.86 -1.50 -2.56 16 22 C -0.06 -0.84 9.83 -39.54 -0.39 -1.23 16 23 C -0.13 -1.85 9.67 -39.59 -0.38 -2.23 16 24 C 0.03 0.45 5.87 -104.62 -0.61 -0.16 16 25 C -0.18 -2.31 7.91 36.00 0.28 -2.03 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.51 8.12 -51.92 -0.42 1.09 16 32 H 0.09 1.24 4.25 -51.93 -0.22 1.02 16 33 H 0.07 1.69 6.42 -51.93 -0.33 1.35 16 34 H 0.05 1.23 7.06 -51.93 -0.37 0.87 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.15 2.76 7.33 -52.48 -0.38 2.37 16 37 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.10 1.22 6.60 -51.93 -0.34 0.87 16 40 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.11 1.47 4.03 -51.93 -0.21 1.26 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -32.03 361.39 -9.50 -41.54 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.20 Total: 1.63 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -1.07 Total: -21.56 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.42 Total: -44.28 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.03 Total: -48.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 52.46 SS G_CDS: -0.54 Total: 51.92 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.03 -9.50 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078405443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.925 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds