Wall clock time and date at job start Wed Apr 1 2020 04:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99881 * 179.97438 * 18 16 15 20 20 C 1.39776 * 119.99885 * 179.97438 * 19 18 16 21 21 C 1.39217 * 120.49663 * 359.73198 * 20 19 18 22 22 C 1.38565 * 118.37463 * 179.73230 * 21 20 19 23 23 C 1.38220 * 119.26493 * 0.51959 * 22 21 20 24 24 N 1.31901 * 120.93934 * 359.74123 * 23 22 21 25 25 C 1.31888 * 121.77801 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 119.68204 * 180.02562 * 25 24 23 27 27 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 33 33 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 34 34 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 35 35 H 0.97000 * 120.00264 * 0.02562 * 19 18 16 36 36 H 1.08004 * 120.81874 * 359.97006 * 21 20 19 37 37 H 1.07995 * 120.37043 * 180.25822 * 22 21 20 38 38 H 1.08003 * 119.53142 * 179.76961 * 23 22 21 39 39 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 7 0.4406 -9.5429 -2.3079 20 6 -0.1857 -10.7853 -2.4416 21 6 -0.5904 -11.4973 -1.3159 22 6 -1.2122 -12.7219 -1.4996 23 6 -1.3997 -13.1987 -2.7833 24 7 -1.0002 -12.5029 -3.8302 25 6 -0.4085 -11.3313 -3.7008 26 17 0.0947 -10.4614 -5.1164 27 6 1.4365 -4.7345 0.2256 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5473 0.1885 31 1 4.1534 -6.7248 0.4030 32 1 2.1300 -7.9003 1.0435 33 1 0.5456 -7.0924 0.9735 34 1 0.3769 -9.4904 -0.2449 35 1 0.7238 -9.0551 -3.0971 36 1 -0.4272 -11.1032 -0.3236 37 1 -1.5429 -13.2994 -0.6490 38 1 -1.8805 -14.1544 -2.9313 39 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089850375.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:21 Heat of formation + Delta-G solvation = 36.111877 kcal Electronic energy + Delta-G solvation = -25811.693175 eV Core-core repulsion = 21747.622204 eV Total energy + Delta-G solvation = -4064.070970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88122 -39.94963 -38.87837 -36.98163 -36.86320 -36.24543 -33.11726 -32.50092 -32.27857 -31.85048 -29.39791 -28.88221 -26.92068 -25.26207 -24.30179 -23.32583 -21.83983 -21.52539 -20.60898 -18.84200 -18.12967 -17.66929 -17.42437 -16.92324 -16.55163 -15.96740 -15.78153 -15.15400 -14.95621 -14.87618 -14.48581 -14.37769 -14.25154 -13.62122 -13.53536 -13.44915 -12.86073 -12.83495 -12.57194 -12.44431 -12.06488 -11.90153 -11.61441 -11.59447 -11.29283 -10.87766 -10.82595 -10.66495 -10.47095 -10.34288 -10.25774 -10.02522 -9.67661 -9.35967 -8.83695 -8.12743 -7.76880 -7.24574 -6.44277 -4.03476 0.55594 0.80711 1.42037 1.52545 2.14114 2.37020 2.46364 3.13571 3.14401 3.17252 3.25947 3.70970 3.96788 4.05483 4.24936 4.37244 4.52227 4.66150 4.72517 4.90963 4.97501 5.04482 5.12648 5.23880 5.37764 5.55897 5.57883 5.69940 5.88751 5.92631 6.13855 6.28319 6.30698 6.61804 6.87150 6.89107 7.05095 7.20394 7.24086 7.34218 7.37727 7.42044 7.78974 8.00337 8.06338 9.01232 9.71158 10.73743 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.001934 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.444946 B =14472.398094 C =14928.195404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.038 4.038 15 C -0.079 4.079 16 C 0.513 3.487 17 O -0.510 6.510 18 N -0.533 5.533 19 N -0.527 5.527 20 C 0.193 3.807 21 C -0.153 4.153 22 C -0.108 4.108 23 C 0.051 3.949 24 N -0.430 5.430 25 C 0.102 3.898 26 Cl -0.028 7.028 27 C -0.173 4.173 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.420 0.580 35 H 0.440 0.560 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -25.371 0.939 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.039 4.039 15 C -0.120 4.120 16 C 0.300 3.700 17 O -0.381 6.381 18 N -0.283 5.283 19 N -0.251 5.251 20 C 0.083 3.917 21 C -0.185 4.185 22 C -0.129 4.129 23 C -0.109 4.109 24 N -0.139 5.139 25 C -0.070 4.070 26 Cl 0.000 7.000 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.262 0.738 35 H 0.286 0.714 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.181 0.819 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.935 -24.786 -0.600 24.811 hybrid contribution 0.625 1.132 0.694 1.468 sum -0.310 -23.653 0.094 23.656 Atomic orbital electron populations 1.70032 1.05946 1.27743 1.46119 1.25286 0.95851 0.98814 0.96580 0.85783 0.78696 0.79784 0.79178 1.19511 1.20288 1.19501 1.21270 0.91761 0.80822 1.52956 0.89140 1.83975 1.34233 1.11375 1.78566 1.19271 0.90257 0.87996 0.92460 1.21204 0.93840 0.99063 1.10555 1.20686 0.98455 0.92291 0.97862 1.20348 0.93199 0.96990 1.10872 1.18551 0.93230 0.91333 1.00777 1.20499 1.03228 0.96091 0.92224 1.21235 0.76992 0.78574 0.93197 1.90809 1.48937 1.58717 1.39634 1.45162 1.63808 1.20868 0.98478 1.43529 1.64515 1.17459 0.99641 1.18278 0.94063 0.85797 0.93560 1.20893 1.04066 0.96493 0.97049 1.22009 0.96611 0.95135 0.99135 1.22423 1.01291 1.00118 0.87053 1.66893 1.07555 1.04185 1.35302 1.20853 1.06164 0.94113 0.85863 1.98417 1.88943 1.73041 1.39622 1.19944 0.99089 0.89992 1.10190 0.91994 0.85548 0.87382 0.87840 0.87688 0.87541 0.73848 0.71403 0.84259 0.83729 0.81851 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -11.04 9.49 30.89 0.29 -10.74 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 9 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16 10 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.23 -5.01 9.17 -39.39 -0.36 -5.37 16 12 C -0.07 -1.39 10.04 -39.61 -0.40 -1.78 16 13 C -0.20 -3.33 9.70 -39.53 -0.38 -3.71 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.08 -0.90 5.83 -29.03 -0.17 -1.07 16 16 C 0.51 6.65 7.94 -10.99 -0.09 6.57 16 17 O -0.51 -9.25 15.87 5.56 0.09 -9.16 16 18 N -0.53 -5.03 6.22 31.22 0.19 -4.83 16 19 N -0.53 -5.64 6.41 32.52 0.21 -5.43 16 20 C 0.19 1.83 6.74 -83.57 -0.56 1.27 16 21 C -0.15 -1.02 9.58 -39.10 -0.37 -1.39 16 22 C -0.11 -0.59 10.10 -39.47 -0.40 -0.98 16 23 C 0.05 0.36 11.17 -17.53 -0.20 0.16 16 24 N -0.43 -4.44 10.33 -10.20 -0.11 -4.55 16 25 C 0.10 1.09 7.29 -17.23 -0.13 0.97 16 26 Cl -0.03 -0.32 27.76 -51.86 -1.44 -1.76 16 27 C -0.17 -3.63 9.65 -39.40 -0.38 -4.01 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.42 2.29 6.68 -182.59 -1.22 1.07 16 35 H 0.44 5.43 6.70 -182.60 -1.22 4.21 16 36 H 0.14 0.53 6.32 -52.48 -0.33 0.20 16 37 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 38 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -35.88 359.43 -9.29 -45.17 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.43 Total: 6.07 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -3.96 Total: -16.72 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 1.06 Total: -39.52 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.44 Total: -1.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.88 -9.29 -45.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089850375.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.279 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds