Wall clock time and date at job start Wed Apr 1 2020 04:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99881 * 179.97438 * 18 16 15 20 20 C 1.39245 * 120.00045 * 179.97438 * 19 18 16 21 21 C 1.39446 * 120.86497 * 0.02562 * 20 19 18 22 22 C 1.37906 * 119.08046 * 179.97438 * 21 20 19 23 23 N 1.31991 * 120.86566 * 0.02562 * 22 21 20 24 24 C 1.31995 * 121.91546 * 359.97438 * 23 22 21 25 25 C 1.38009 * 120.82307 * 359.73745 * 24 23 22 26 26 Cl 1.73599 * 120.47925 * 180.27061 * 25 24 23 27 27 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 33 33 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 34 34 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 35 35 H 0.97000 * 120.00264 * 0.02562 * 19 18 16 36 36 H 1.07999 * 120.46318 * 359.95590 * 21 20 19 37 37 H 1.07995 * 119.56853 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.58823 * 180.02562 * 24 23 22 39 39 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 7 0.4406 -9.5429 -2.3079 20 6 -0.1833 -10.7806 -2.4412 21 6 -0.5973 -11.4976 -1.3191 22 6 -1.2121 -12.7196 -1.4937 23 7 -1.4096 -13.2116 -2.7025 24 6 -1.0328 -12.5645 -3.7894 25 6 -0.4161 -11.3330 -3.7012 26 17 0.0695 -10.4866 -5.1370 27 6 1.4365 -4.7345 0.2256 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5473 0.1885 31 1 4.1534 -6.7248 0.4030 32 1 2.1300 -7.9003 1.0435 33 1 0.5456 -7.0924 0.9735 34 1 0.3769 -9.4904 -0.2449 35 1 0.7238 -9.0551 -3.0971 36 1 -0.4383 -11.1015 -0.3270 37 1 -1.5354 -13.2817 -0.6302 38 1 -1.2136 -13.0021 -4.7601 39 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089851526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:26 Heat of formation + Delta-G solvation = 33.597501 kcal Electronic energy + Delta-G solvation = -25800.308781 eV Core-core repulsion = 21736.128779 eV Total energy + Delta-G solvation = -4064.180002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87536 -39.96629 -38.89765 -37.08775 -36.86900 -36.29168 -33.24947 -32.40751 -32.02615 -31.48716 -29.70153 -29.11204 -26.98718 -25.27105 -24.17957 -23.34564 -21.87774 -21.55485 -20.62862 -19.04811 -18.16583 -17.64044 -16.98203 -16.71771 -16.61227 -16.14644 -15.80163 -15.11307 -14.87759 -14.76662 -14.52357 -14.43293 -14.37530 -14.12539 -13.56673 -13.52186 -12.89950 -12.61775 -12.47948 -12.44251 -12.33259 -11.92373 -11.64266 -11.60712 -11.30427 -10.88940 -10.83716 -10.67731 -10.47894 -10.22626 -10.20389 -9.96728 -9.46151 -9.37079 -8.84643 -8.14188 -7.98828 -7.25808 -6.45206 -4.04453 0.54925 0.88826 1.34811 1.71864 2.12560 2.35670 2.43036 3.12879 3.13671 3.16576 3.31397 3.67033 3.95940 4.02563 4.16951 4.34526 4.53283 4.67357 4.72702 4.91157 5.02765 5.11196 5.12635 5.26729 5.30673 5.36537 5.54915 5.68705 5.87531 5.98613 6.12581 6.24968 6.29193 6.60397 6.83882 6.86992 7.03943 7.18769 7.19014 7.33028 7.40877 7.54665 7.77668 7.99347 8.01580 9.00280 9.70068 10.72800 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.001930 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.908911 B =14507.738750 C =14966.004953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.038 4.038 15 C -0.079 4.079 16 C 0.514 3.486 17 O -0.510 6.510 18 N -0.534 5.534 19 N -0.520 5.520 20 C 0.267 3.733 21 C -0.249 4.249 22 C 0.151 3.849 23 N -0.515 5.515 24 C 0.163 3.837 25 C -0.168 4.168 26 Cl -0.052 7.052 27 C -0.173 4.173 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.422 0.578 35 H 0.440 0.560 36 H 0.138 0.862 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -24.331 -0.882 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.039 4.039 15 C -0.120 4.120 16 C 0.301 3.699 17 O -0.381 6.381 18 N -0.284 5.284 19 N -0.243 5.243 20 C 0.151 3.849 21 C -0.275 4.275 22 C -0.005 4.005 23 N -0.228 5.228 24 C 0.006 3.994 25 C -0.204 4.204 26 Cl -0.024 7.024 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.264 0.736 35 H 0.286 0.714 36 H 0.155 0.845 37 H 0.181 0.819 38 H 0.183 0.817 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.616 -24.221 -1.650 24.285 hybrid contribution 0.968 1.742 -0.016 1.993 sum 0.353 -22.478 -1.666 22.543 Atomic orbital electron populations 1.70032 1.05950 1.27758 1.46089 1.25287 0.95851 0.98819 0.96565 0.85782 0.78699 0.79773 0.79182 1.19512 1.20279 1.19491 1.21271 0.91763 0.80817 1.52977 0.89135 1.83975 1.34237 1.11377 1.78546 1.19269 0.90257 0.87995 0.92462 1.21206 0.93839 0.99067 1.10538 1.20687 0.98462 0.92286 0.97851 1.20348 0.93192 0.96998 1.10879 1.18549 0.93233 0.91317 1.00827 1.20501 1.03284 0.96103 0.92132 1.21271 0.76885 0.78516 0.93252 1.90811 1.48906 1.58713 1.39641 1.45212 1.63892 1.20928 0.98368 1.43466 1.63510 1.17429 0.99909 1.17719 0.89878 0.84349 0.92997 1.21442 1.09701 0.98850 0.97504 1.22603 0.91103 0.91483 0.95288 1.67923 1.21687 1.34869 0.98333 1.22582 0.90207 0.88182 0.98435 1.21421 1.13502 0.98802 0.86715 1.98390 1.90610 1.77058 1.36343 1.19944 0.99088 0.89995 1.10190 0.91983 0.85537 0.87371 0.87839 0.87630 0.87484 0.73623 0.71373 0.84462 0.81929 0.81686 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 13.67 55.48 0.76 -24.67 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 9 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 10 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.23 -4.99 9.17 -39.39 -0.36 -5.35 16 12 C -0.07 -1.38 10.04 -39.61 -0.40 -1.78 16 13 C -0.20 -3.32 9.70 -39.53 -0.38 -3.70 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.08 -0.89 5.83 -29.03 -0.17 -1.06 16 16 C 0.51 6.62 7.94 -10.99 -0.09 6.53 16 17 O -0.51 -9.19 15.87 5.56 0.09 -9.10 16 18 N -0.53 -5.00 6.23 31.22 0.19 -4.80 16 19 N -0.52 -5.43 6.40 32.55 0.21 -5.22 16 20 C 0.27 2.43 6.77 -83.56 -0.57 1.87 16 21 C -0.25 -1.72 9.54 -39.25 -0.37 -2.09 16 22 C 0.15 1.04 11.17 -17.60 -0.20 0.84 16 23 N -0.52 -4.54 10.36 -13.32 -0.14 -4.68 16 24 C 0.16 1.35 10.98 -17.57 -0.19 1.16 16 25 C -0.17 -1.53 6.36 -39.18 -0.25 -1.78 16 26 Cl -0.05 -0.49 27.76 -51.86 -1.44 -1.93 16 27 C -0.17 -3.62 9.65 -39.40 -0.38 -4.00 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.42 2.34 6.69 -182.59 -1.22 1.12 16 35 H 0.44 5.30 6.81 -182.60 -1.24 4.06 16 36 H 0.14 0.57 6.33 -52.49 -0.33 0.24 16 37 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.11 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -35.31 359.50 -9.27 -44.58 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.46 Total: 6.67 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -3.88 Total: -16.74 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 1.02 Total: -39.36 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.09 Total: -14.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.44 Total: -1.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.31 -9.27 -44.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089851526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.178 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds