Wall clock time and date at job start Wed Apr 1 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99881 * 179.97438 * 18 16 15 20 20 C 1.39245 * 120.00045 * 179.97438 * 19 18 16 21 21 C 1.39446 * 120.86497 * 0.02562 * 20 19 18 22 22 C 1.37906 * 119.08046 * 179.97438 * 21 20 19 23 23 N 1.31991 * 120.86566 * 0.02562 * 22 21 20 24 24 C 1.31995 * 121.91546 * 359.97438 * 23 22 21 25 25 C 1.38009 * 120.82307 * 359.73745 * 24 23 22 26 26 Cl 1.73599 * 120.47925 * 180.27061 * 25 24 23 27 27 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 33 33 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 34 34 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 35 35 H 0.97000 * 120.00264 * 0.02562 * 19 18 16 36 36 H 1.07999 * 120.46318 * 359.95590 * 21 20 19 37 37 H 1.07995 * 119.56853 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.58823 * 180.02562 * 24 23 22 39 39 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 7 0.4406 -9.5429 -2.3079 20 6 -0.1833 -10.7806 -2.4412 21 6 -0.5973 -11.4976 -1.3191 22 6 -1.2121 -12.7196 -1.4937 23 7 -1.4096 -13.2116 -2.7025 24 6 -1.0328 -12.5645 -3.7894 25 6 -0.4161 -11.3330 -3.7012 26 17 0.0695 -10.4866 -5.1370 27 6 1.4365 -4.7345 0.2256 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5473 0.1885 31 1 4.1534 -6.7248 0.4030 32 1 2.1300 -7.9003 1.0435 33 1 0.5456 -7.0924 0.9735 34 1 0.3769 -9.4904 -0.2449 35 1 0.7238 -9.0551 -3.0971 36 1 -0.4383 -11.1015 -0.3270 37 1 -1.5354 -13.2817 -0.6302 38 1 -1.2136 -13.0021 -4.7601 39 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089851526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:25 Heat of formation + Delta-G solvation = 8.836623 kcal Electronic energy + Delta-G solvation = -25801.382493 eV Core-core repulsion = 21736.128779 eV Total energy + Delta-G solvation = -4065.253714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62300 -41.01689 -40.41292 -38.35346 -37.70592 -37.39947 -34.37897 -34.11145 -33.28427 -32.06467 -30.97977 -30.32393 -28.22015 -27.22062 -24.83698 -24.05483 -23.29798 -22.89403 -21.88805 -19.94445 -19.35661 -18.99244 -18.70029 -17.51937 -17.28237 -16.91751 -16.81563 -16.65756 -16.16823 -16.09890 -15.58602 -15.49545 -15.40168 -15.24916 -14.97501 -14.79816 -14.35482 -14.01835 -13.68524 -13.50973 -13.04040 -13.01500 -12.96918 -12.81765 -12.48761 -12.42360 -12.33845 -12.22943 -12.14204 -11.31180 -11.21185 -10.99682 -10.80306 -10.57995 -10.05913 -9.66640 -8.98619 -8.74467 -8.47750 -6.16167 -0.03193 0.24254 0.35971 0.72764 0.82694 1.06787 1.33239 1.44406 1.48011 1.49685 2.16989 2.72579 2.74824 2.95244 3.18553 3.42161 3.47401 3.62700 3.67833 3.87622 4.02020 4.10445 4.16726 4.31704 4.41905 4.56407 4.60290 4.63039 4.68188 4.74217 4.77277 5.04844 5.12034 5.28968 5.35737 5.57476 5.64071 5.71757 5.74431 6.01888 6.05418 6.23267 6.41161 6.96287 6.96868 7.16071 7.78440 8.75461 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.001930 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.908911 B =14507.738750 C =14966.004953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.109 3.891 11 C -0.245 4.245 12 C -0.076 4.076 13 C -0.177 4.177 14 C -0.029 4.029 15 C -0.075 4.075 16 C 0.515 3.485 17 O -0.572 6.572 18 N -0.510 5.510 19 N -0.534 5.534 20 C 0.251 3.749 21 C -0.241 4.241 22 C 0.149 3.851 23 N -0.533 5.533 24 C 0.158 3.842 25 C -0.179 4.179 26 Cl -0.063 7.063 27 C -0.190 4.190 28 H 0.272 0.728 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.442 0.558 35 H 0.431 0.569 36 H 0.169 0.831 37 H 0.196 0.804 38 H 0.179 0.821 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 -27.480 0.842 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.059 3.941 11 C -0.264 4.264 12 C -0.094 4.094 13 C -0.195 4.195 14 C -0.030 4.030 15 C -0.116 4.116 16 C 0.303 3.697 17 O -0.448 6.448 18 N -0.261 5.261 19 N -0.257 5.257 20 C 0.136 3.864 21 C -0.266 4.266 22 C -0.006 4.006 23 N -0.245 5.245 24 C 0.001 3.999 25 C -0.214 4.214 26 Cl -0.035 7.035 27 C -0.209 4.209 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.176 0.824 33 H 0.153 0.847 34 H 0.288 0.712 35 H 0.275 0.725 36 H 0.186 0.814 37 H 0.213 0.787 38 H 0.196 0.804 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.918 -27.499 0.119 27.515 hybrid contribution 0.537 2.242 -0.524 2.364 sum 1.455 -25.257 -0.405 25.302 Atomic orbital electron populations 1.70182 1.07997 1.28812 1.49010 1.26601 0.96892 1.02745 0.95930 0.84652 0.77401 0.74271 0.79912 1.18435 1.19535 1.17918 1.21768 0.92462 0.81525 1.53251 0.88279 1.83933 1.35889 1.12556 1.81745 1.19914 0.91665 0.88041 0.94494 1.21318 0.93209 1.00292 1.11627 1.21141 1.00226 0.91593 0.96442 1.21012 0.93563 0.98041 1.06893 1.19114 0.93656 0.92667 0.97523 1.20635 1.05328 0.93580 0.92022 1.21425 0.76420 0.78865 0.92952 1.90809 1.51930 1.60553 1.41513 1.44893 1.62257 1.20040 0.98889 1.43527 1.64459 1.17959 0.99803 1.17985 0.90431 0.84180 0.93760 1.21808 1.08291 0.98412 0.98131 1.23187 0.90190 0.91634 0.95594 1.67976 1.22041 1.35395 0.99135 1.22828 0.89930 0.87942 0.99201 1.21581 1.14080 0.99184 0.86589 1.98384 1.90761 1.77332 1.37021 1.20261 0.99436 0.90431 1.10797 0.91865 0.86637 0.83833 0.83161 0.82428 0.84713 0.71199 0.72544 0.81385 0.78698 0.80365 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.58 13.67 21.61 0.30 -57.29 16 2 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 3 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.41 -24.73 9.49 67.92 0.64 -24.08 16 8 H 0.10 5.45 5.21 -2.91 -0.02 5.43 16 9 O -0.23 -14.49 9.76 -22.74 -0.22 -14.72 16 10 C 0.11 5.57 6.65 22.58 0.15 5.72 16 11 C -0.25 -11.01 9.17 22.39 0.21 -10.81 16 12 C -0.08 -2.65 10.04 22.25 0.22 -2.42 16 13 C -0.18 -5.31 9.70 22.30 0.22 -5.10 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 15 C -0.08 -1.36 5.83 29.10 0.17 -1.19 16 16 C 0.52 11.80 7.94 87.66 0.70 12.50 16 17 O -0.57 -20.11 15.87 -3.04 -0.05 -20.16 16 18 N -0.51 -7.88 6.23 -173.54 -1.08 -8.96 16 19 N -0.53 -10.25 6.40 -50.92 -0.33 -10.57 16 20 C 0.25 4.07 6.77 38.57 0.26 4.33 16 21 C -0.24 -2.48 9.54 22.48 0.21 -2.27 16 22 C 0.15 1.55 11.17 84.59 0.94 2.50 16 23 N -0.53 -8.22 10.36 -196.07 -2.03 -10.25 16 24 C 0.16 2.42 10.98 84.61 0.93 3.35 16 25 C -0.18 -3.07 6.36 22.53 0.14 -2.93 16 26 Cl -0.06 -1.19 27.76 -2.72 -0.08 -1.27 16 27 C -0.19 -8.10 9.65 22.39 0.22 -7.88 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 30 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 32 H 0.16 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 34 H 0.44 2.78 6.69 -213.32 -1.43 1.36 16 35 H 0.43 10.22 6.81 -213.32 -1.45 8.77 16 36 H 0.17 0.55 6.33 -2.91 -0.02 0.53 16 37 H 0.20 0.64 8.06 -2.91 -0.02 0.61 16 38 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -86.16 359.50 2.20 -83.96 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.74 Total: 23.77 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 5.39 Total: -30.23 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -3.14 Total: -87.07 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.27 Total: -34.88 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -86.16 2.20 -83.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089851526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.800 kcal (2) G-P(sol) polarization free energy of solvation -86.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds